Array 1 461441-459950 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCJE010000002.1 Donghicola mangrovi strain B5-SW-15 2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 461440 29 100.0 32 ............................. GGGTGCGAGTACAACCGCAGGCAAGAGCGGAA 461379 29 100.0 32 ............................. ATTAGGCGCATCGCTCGCGATAGCCTGGCGCT 461318 29 100.0 32 ............................. CGGCATCGAGAGTTCGATTGTCTTCGCCGTCA 461257 29 100.0 32 ............................. AATGACCACGTTGTTGATAGGATTTCTGCGGC 461196 29 100.0 32 ............................. AGATGGAGATGTTCTTTGTTCATCTCGAGGTA 461135 29 100.0 32 ............................. CGCACCGTTAATGCATGGGTAAACGCGAACGC 461074 29 100.0 32 ............................. AGACCGTCGCCGTGCTGCTTGAGCGGATTGAG 461013 29 100.0 32 ............................. GTCAGTTATATTTAGCTGGCGGAAGCGATCTC 460952 29 100.0 32 ............................. TTGACCCGCCGGGACGGTCAAATCTTGGCGTT 460891 29 100.0 32 ............................. TGGCAGCAATCCGTTCATGGGAGGAGGGCGCA 460830 29 100.0 32 ............................. GCAATCACAACTGAACAGTGGGGCTTCCTCGC 460769 29 100.0 32 ............................. CAATCCAGCGGATTGGGGCCAGGTGGTGGCCG 460708 29 100.0 32 ............................. ATGCAGGTTGCGGCAGACCCTGACCGCGATGC 460647 29 100.0 32 ............................. AGTGGAAGCGGGCGCGGGTGGCAGAATGATCC 460586 29 100.0 30 ............................. CTCTGGCAGCGCCGGGCGGACGGCGAGGAC 460527 29 100.0 32 ............................. AAAACCGCCACGGAACTGGAGGCCATGCGCAG 460466 29 100.0 32 ............................. CGTGAGCGCATATTGCTGCTGCAAGAGCAGGT 460405 29 100.0 32 ............................. AGGATGCGTTTACCGAGCCCGGCAAGCGCGGA 460344 29 100.0 32 ............................. CCCCTTGCGTATCAAGAATGGCTCGATGGAAA 460283 29 100.0 32 ............................. GCCAGCGGGCGAGGAAAGACAATGGTGGACAA 460222 29 100.0 32 ............................. TCCGTAAAGAACTGGCTGAACATCTCAAAGAC 460161 29 96.6 32 ...........T................. CGATGATGAAGCTGATCCCCCTGATCGTGCAA 460100 29 100.0 32 ............................. TCCGCCGTTTCCACCCACCTATCCAGGTGTTC 460039 29 100.0 32 ............................. TGATAGGTGTGGATTCATCACCTTGGACTTCA 459978 29 82.8 0 ......T..............C..CTT.. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.2 32 CTGTTCCCCGCATGCGCGGGGATGAACCG # Left flank : ATCGAGGAAGTCTTGTCAGCCGGAGAGATGCCGAAACCGGATGTGGCTCCCGAAGCGTTGGGTCCCGCATTCGATGATCCGGCGCAGAGTGGGGACGATGGGCACAGATGATGGTCGTGGTGATTTCCAATGCGCCACCACGGCTCAGGGGGCGGTTGGCGGCGTGGCTGCTTGAGGTCAGAGCAGGTGTCTACGTCGGTGACTATAGTGCTAGAACACGGCAAATGATCTGGGAACAAGTCGAGCTCGGCATCGAGGATGGCGACGGAGTGATGATCTGGAAGGCCCCCACAGATCAGGGCTACGACTTTCTGACAATTGGTCGAAACCGCCGCATGCCAGTCGATTTTGACGGCCTACAACTGGTCAGCTTTCTTCCGAAATAGGAGGCGTTGCCGAGCGCGCCACCGTTGAAATTCGGGATGGAGCAAAGCACTTGATTTTCCGGTACGTTCTTTGACAATTGAAAAACTATTGTGTTTCAGCCATCTACAGGAAGC # Right flank : ATAACACGTCTCACTGATTGGAATGTAAGGCAGGCCAGCGCAATGTTGACGCCCTACACCGCCACCGCTTTTACGGCCAACTCCCGGCCTTGAGTTGGCCGACTCGTGTGTCCCAGCGTTTCCTTGAGTAGATCGTTCTGCATGTTGACGTGCGCGAACGTGCGCTTTAGGCGCCTATTCTCTTCGGCCATCTCCTTCAGCTCTGAAATTAGGCTTGCATCCATACCGCCATAATTCGTTCGCCATTTGTACAGTGTAGCGCTGCTAATCCCATGCTCGCGGCAGGAAGACCGCCCTCAATGGCGCAGGAAGTCCATGTTCCGGGTCTCTGTGAAACGTGTCTTATTCATCGGAATCTCTTCGTTCATCCTGCCAAGAAAATTCTAATTCTGTATCCCCCAAAATCTGGGAGAAATTACCCAAAGATCCCTGACAAATCGCGTTGGGGAAGGTTTCCACATGGGTCAGTTCTCTGTGACATCCAACATCTCGAGAGCTAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCATGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19180-18365 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCJE010000003.1 Donghicola mangrovi strain B5-SW-15 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 19179 37 100.0 35 ..................................... GCGAATAATGCATGAATGACCTCCCAGTCATAAAT 19107 37 100.0 35 ..................................... TCTCATGAAATTAGCGAGTTCTTTTTTTTTTTTTT 19035 37 100.0 32 ..................................... TTAGACCTTTACAGCCGCACCACCACCGTAGA 18966 37 100.0 31 ..................................... GTGAGCATTCCCATGCCCGGCGACCTGATGA 18898 37 100.0 35 ..................................... TGACCGCTAACAATTTTCGCAAGTATTCCACTATT 18826 37 100.0 34 ..................................... GTAACGACGGTAGTGATGATAGCGAAAATGAAGT 18755 37 100.0 38 ..................................... AGAGAACTGTTGTTCTAGGATAGTTCCTCAAAGATTCG 18680 37 100.0 35 ..................................... TGAGGGTTGCAAGATCGTCGACATCAGAGATTTTT 18608 37 100.0 32 ..................................... TTTCTTTTTCTTGGGACGCGGACGAACAACAA 18539 37 100.0 32 ..................................... ATTTCCGAACTTGCTCTCGGGATAAAAGTACG 18470 37 100.0 32 ..................................... CTACTTTCAAGGTTATTTGTTTGTATTTTTAA 18401 37 83.8 0 ..............................CT.TGCG | ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 98.6 34 GTTCATGAACCTTCACCGCGCTAATGCGGATAGAAAC # Left flank : GTCCAAATCATTTCTTAAAATCCGTAATTTGCAACAAGCTTGCAGAAACGTACAAATTTGAGAACCCCAGAAATCAAAAAATAAAATTCCCCGAGAAATATGTTGAAGGAACACAAAAATTCAAAGAATACTTGAGCTTACACGAAGTACGAACTCATGGCTCTACACCGTGAAAAATTTTGGAAACACTCAGGCAGCCAAAATATAAAATAGAACTTACACATTTACACCCCGACGACCCCAAAAAATATCCGTTTCGCTTGGCGCACTATCACCCCCAAAATCAGGGTTGATTTTTGGATCAGGGCGTACAAAGCTTGCATCACAATGAAAACAATGGGAAATCAACCTTGGAAATTATCAAGTTATTGATTTTTCGTGTGAATTTTAAATTTTGACATTCAAGACCGAGGCTTAATCAATCTACAAGCCCCGCTTGAAAATCGACATTGGAAAGGTGGTCGAATTCATAAATAAGATCAATGACCTGCAGCAACCCT # Right flank : GGCGCTGGGTCAGTAGTCCAGCACCTGCCCCTTAAAAGGATTTTTGGTCGGGTCGGAACAATGGCGACCAAAGGCCCGTGCCTCTTCCAGCATGATCGCGCGCCACGTGCGCTGTTGTCTCGAATGAACCGAGCGCAATTTGCGTGACACTGTCCGCTCATAACCTGTGATCAAGGCCCGGATGCCTTCGCGATCAATCCGAACACTGTCATCGCACACGTCGAACATCTGATCCCGCAGGCGCGATTGGTTGAACAAAGTAACCGCCACGCCTTCGGTCAACGGGGCGCGAAACCCCTCCATCAGGTCATAGACACAGGCTTCGTGCCGGTCGCGGGGCGTATGTAAAAGCCCGAATCCAGGATGCAGACCAGCGCGCAAAATGGCAGAATGGATGTCCCGCTCCAACATCGCCGTCAGGTAGTTAATCGCCGCATTCAACGGATCAAGCGCGGGACGCTGCCGCATGAAATTCCCCTGCACGGCCGCGCACAACCTGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGAACCTTCACCGCGCTAATGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 28341-27509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABCJE010000003.1 Donghicola mangrovi strain B5-SW-15 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================= ================== 28340 37 100.0 29 ..................................... AGGGCGCTGCTTGTTTTCACCGATGGTTT 28274 37 97.3 37 .....................C............... TTACCAGTTTTGGACAATAGTCCCTCCCGAAAAATTA 28200 37 100.0 35 ..................................... ACAAATATAATAGGTCCTAAGCAGAAAAATTGAAT 28128 37 100.0 32 ..................................... TATTGCGGACAGGTCTTGCGAGACCACCGAAG 28059 37 100.0 31 ..................................... CTTTCTCTTCAACTCCGAGGGCCGCTGCATT 27991 37 94.6 33 ....G...............................A ATACCTTGCCCACCGTGGTGAACTCTAAAAACC 27921 37 100.0 32 ..................................... CCATCGTTATGCTCCTAGGATTGCGCCGTTAT 27852 37 100.0 34 ..................................... GCAAACACGCCCTTTCCTGTGGAAAACTTGACGC 27781 37 97.3 61 .C................................... ATTGGAAACCCAGGAGTAGAGTAATCCGAGATTACCCCGTCCAGCTGAGGTGATTCATCGG 27683 37 94.6 32 ........G.............T.............. TGAGTGTCTGGAATTAGGAAGCGGATTGTCCG 27614 37 94.6 32 ...T.................C............... TTGGGTCAAACATTAGATAGGATTTCCCCCTG 27545 37 75.7 0 ...................A.C.....AA.A..GCCG | ========== ====== ====== ====== ===================================== ============================================================= ================== 12 37 96.2 35 GTTCATGAACCTTCACCGCGCTAATGCGGATAGAAAC # Left flank : GAACCCCTCGGCGGTTTGCATGGGAATGCTGCTGCCAAAGACGCGAGAGCGTTGAAATCCGTCCGCCCCGACCGCGTACATCCGCAGACTATCGCCCGCATCCAGATGCGTCGCCGCACGTTCTGCAATCGTATCAGCCTTGCGTTGACTTAGGCGCGCCTCAAAGACCGAGTACTGCACCCGAGTTGCGTGTTTCTCTAGTATTCCGGCGACCTTCCGGCGGCGTTTTGCGGACGATACGTCATAAACAAAGACCATCAGCATCTTTGTTCTTGCCATTTCCCGTCCTCATGAAAAAACTTCAACTAAAGCTTGCGCGACACAGCGCCAGAGTCAATAATTCAACCTTGGAAAAAGTGTAAACACCTGTACGACCTCATAAATTTGCGATTTTGCGACACGTAATTCAGTGTTTCACATTGCAAAATAAAAGGAGAAATGCTCGACCTTGGAAAGCAATGGTTTTTTCATCAACAAAATCAGTATCTTCCAGAAACCCT # Right flank : CCTTCGGGACGGCCTTTTACTCATGGGAATTATGCAAATGTTACATTGGCGATGTCGAGAACCCGATAGAGGCATCATAGGCTATTACCTTGCCCTGATCTGGTCCATTCGTCTTGGCGTAATAAAAGATCGCATTCCTGTTCAAAGACTGGATCGCTGTTGCGATCGAAAAGATTTTCAGGCCAGGAGTGACATCGAAGGCGACCCTATCCTCCAGGTCTTCTATCTTTTTCCCCGCATCCTCGGCGATCATCTCGAAAGCACGCGCAATCGCTGCTGTGACGTAATCGAAATTCTCATAGTCCTGCCCCTCTACACTACCATACATGGTCGTAAATCTGGCCGAGGGGTTTCCTTTGGCAGAAACTCTTTTGACATCGATTTCAGGACAAAAACCCGAAATGCAGGTTTGGAAAGCTTCGAATTGGTCGAAGTTTGGCTCTACAACCAGAACTTGCTTCAATTTCCCTTTGCGACACGCCGCACGGATCACGCGCAAG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGAACCTTCACCGCGCTAATGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //