Array 1 20087-20718 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCH01000053.1 Alkalihalobacillus clausii strain 7547-G contig00053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 20087 32 100.0 36 ................................ AACGCGCTCCCTGTAGACGTGTAAGTATCGCTCGTC 20155 32 100.0 36 ................................ GCTTTGCAAATGGATAGCAGACAAGTGGGGTATATG 20223 32 100.0 37 ................................ CAACTCGGCATAACAACTTTCAGGTCCTCCATTGTTT 20292 32 100.0 34 ................................ CCTGTTACCTCTTTAGAGAGCTTGTTAAAGCTAT 20358 32 100.0 33 ................................ TTTTTTTCTTTGATTTATATAATCCTCAATCAT 20423 32 100.0 35 ................................ TTGTGGTGTCATACGTGCATAAGCGTCACGATCAA 20490 32 100.0 33 ................................ AAGAAATTTAAATCCTCCACTTGGTTGAATAAA 20555 32 100.0 35 ................................ GTTAAGGCTCATAATAGTAAATCCTCCAATATAAT 20622 32 100.0 33 ................................ AATAAACTGCAAGATCACGTTATTGCAGATTAC 20687 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 10 32 100.0 36 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TCCCAATCATCGCGATTCAAATACTGACGATCATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAGAAATAGGAAAGGGCGATTTGTAGAAGTTAGCTGAGCCTGCCGATATAAGTAGCCGGCAGGCTTTGTATTTTGGAGGAAATCACGTATTTTGAGTGGCGGTGGGGCCAGTGTTTGTGGAATTGGCGATTGCTTGCAAAAAGACATTAGATTTTAATCTATGATAATTAAAATGGAGGACGTGATATAATTTGTATAGTCTCACTCGTAGAGCAATTGGCTGAGTTTAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGTGCTCAAATATGAGGAAATATGTGTAAAAGTGGTGAAATGTTGTTGGTTTCCCATGATATGATAAAGGAGAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAAATTCCAAAAAATAGGGAGATTTGGCT # Right flank : TGTATTTTCAATTCGATACAAAAAAAGCCTCGGCACAAAAATGCCGGGGCTACAGTTTTTAGAATGGTATGTTACTTTTGCCTGTTGATTTAAAGGTACATTAATTTCGCCTGCAGTTGAATCAAAATTTGGTGGGGTAAATTGGCAACGATGGCTGGCAGTTCATTCTACCAAGGTCCATTTCTGAAAGATAGTCTGTGTTAACAACAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCCGCGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGGATTTCCCTTATGTTGACGTTCGGACTTCTGATCGTTGCAATGCTGTCATTTCACAACCACAAAAAATAATCCACCCTTGAGTTAGTGGCTCAGGTGGATTATTCGTCCAATCGGCCGATCCCCTTGCAGGGAACCGAGCTATTGTTTGACTGAAGGTGTTACAGCGCCTTCAGTCTTTTTTACTTTAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 32367-32864 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCH01000053.1 Alkalihalobacillus clausii strain 7547-G contig00053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 32367 32 100.0 36 ................................ GTCAATCCGGCCCCACCCCTCAATATGAGTGATGAT 32435 32 100.0 34 ................................ GGATTATCTACGCGGACGGCTCCTCGTTAGATTT 32501 32 100.0 37 ................................ AACCACAAATTCCCCTCTGCGAGAGAAGCCTTAAAAA 32570 32 100.0 33 ................................ AATTTGAAAAACACCCGAATGATTATTCATGTA 32635 32 100.0 35 ................................ GATTTCCTGGTTATACATGACCAAGGCGCTCCTGC 32702 32 100.0 34 ................................ GATAAGCGATTTCCGCGTTTCGCATCGCCCTTGC 32768 32 100.0 34 ................................ GTCCCTCAGAAAGAATTTGAGTTTATGGGCCGTA 32834 31 96.9 0 .........................-...... | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 99.6 35 ATCGTACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : TGATTAAAAAAGCGAAAGACATTCGTACTGTTGAGGAAAGTTGGAGATTTGTAGATTTTAAAAGATATTCTATCACCTACGACAAAAAGTTAGCACTTCCAGCCATCGAGGGTTGGGCAAGGTATGAGGGGGATTTAACCCCATTCACTGAATTACTAGAAATAGGAAAATTACTACATGTTGGCAAAAATGCTACACATGGATTCGGACATTATGAAGTTTTTGCTGATAACTAAATTTTCGAATCTAGAGCAGGAGACAAAACCGTCCTTTTTGACAAGCAAGATGTTGATTCCATAAAAATACTGCCTGCAAACTGTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTAAAATATGAAATAATGTGTGTAAAAGTGTTGAAATGTTGTTAGTTTCCCATGATATTATAAAGGAAAGCAGCGGATTTTCCCTAATATTTATTGTTTTACTTCAAAAAATAGGGGGATTTCGCT # Right flank : TATATTTTCAATTCGATACAAATGTAACCCCGTTTTATTTAAAAATGCCTGTAACTAAACAGCCATTACGCAACGATCCGACAGTAATTGTATTCCAGTAAAGCCTATAAAAAGTAAGAAAGGCCTCGGCACAGATACCGAGGCTACAGTTTTTAGAATGGTATATCACTTTTGCCTGTTGATTTAAAAAAAGTACATTACTTCGCCCGCAGTTTTAGCAAAATTTGACGAGGATAAAATGGCAACGATGGCTGACAGTTCGTCCTACCATTTGATCAACGGAGGCCTGTTTCTGAAAGATAGTCTATGTTAACAATAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCTCCGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGGATTTCCCTTACGTTGACGTTCGGACTTCTGATCGTTGCAATGCTGTCGTTTCACAACCATAAAAAATAATCCACCCTTG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGTACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 43259-44088 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCH01000053.1 Alkalihalobacillus clausii strain 7547-G contig00053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 43259 32 100.0 33 ................................ TGAATACGCGGAAACCCTTATTTACCTTGATAA 43324 32 100.0 34 ................................ TTGTAGTCTTTGCCAGTCGGCGGCAATATCTGCT 43390 32 100.0 36 ................................ CTGCGTGATTAAAGGCAAAGAAAACGACATGGTTTA 43458 32 100.0 35 ................................ AATATAGAGAAAAACCACCAACCAAGGACATTTTC 43525 32 100.0 36 ................................ CAGTCATTGCACTGTCCCAACTGTCGAGGGGTGTCG 43593 32 100.0 35 ................................ ACTTGGGGGAGTAATCCCCCCTCTGGTTGGCATGA 43660 32 100.0 36 ................................ AAAAATGCACAAGGTCAAATAGATAAGTTGGTTGTA 43728 32 100.0 35 ................................ TCCCTTTTGACTCGAAAGAAAAAGCGGAATGCTTT 43795 32 100.0 35 ................................ TAATTTTTTTACCCATCCTCGTATATACATCCATG 43862 32 100.0 34 ................................ GAAAAATGTCCTGGGATGAGCCTGCTTTAACGAT 43928 32 100.0 34 ................................ TTTTGTTTAATAATTTCACGTAATGTACCGTTAG 43994 32 100.0 34 ................................ TTCCCTGTACGGTGTTTGTATTGCTCATATTTAT 44060 29 87.5 0 ............................T--- | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 99.0 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : CGCCATTTTTGTGGAAGTAGGTGAAAACATGCTCGTCTTGATTACATATGATGTCCAAACGTCAAGCCTAGGAGGGTCCAAAAGGCTGCGCAAAGTGGCCAAAGCATGCCAAAACTACGGACAACGAGTACAAAACTCCGTTTTCGAGTGTATTGTGGATTCAGCTCAATTAACATCATTAAAACTTGAACTCAGTAGTTTAATTGATAAAGAAAAAGATAGTTTGCGCATTTACCGATTGGGAAACAACTATAAATCGAAAGTGGAACACATTGGTGCAAAACCAACCGTAGACATAGAGGATCCTCTGATTTTTTAATGGTGCGTACCCCAAGTGAACATAAAATCCCTAGGGGACCCGCACCAAAAAACAATCGAAATATGTGTAAATGTGTATTAATTTGAAATAAGATGTTGTTGATTTTAAATAATTAGAGTAGAATCAATGAAGATTTCCTACTTTAAGAGCTTTTTTCCCTTTTAATTAGAGGATTTCCGCT # Right flank : | # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7269-7901 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCH01000046.1 Alkalihalobacillus clausii strain 7547-G contig00046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================================================= ================== 7269 32 100.0 34 ................................ CCCGAAGGTAAATAAAATTTACTATCCTAAAACA 7335 32 100.0 34 ................................ ATAACCGCGGTCCAAGTAGTCGTTATGTGCTTGG 7401 32 100.0 35 ................................ AATAGGCGGTTCCAAAGTTATAAAACCGACAAAAA 7468 32 100.0 36 ................................ CATCTTCTGAACAACCGTAATTAACGGAACCTCTAC 7536 32 100.0 33 ................................ CCAGCCTTGTTCGACCTCTACCTTTCCCTTTGT 7601 32 96.9 35 ...........A.................... TACCACTGCTTTTACGAAGTACTCGTTTAGCTCCT 7668 32 96.9 34 ..........A..................... CAGATGTCCATGTTGATTTGACCTGTCTGTAAAG 7734 31 78.1 105 ..........A..C......-.TC......TC TCTTTGACAGATGCTACCGATTCCGCGTCTAAAGGTCACACGTTGTGTAAGTAATAGAGTCAAATAAAAGTTTCTCTGGCCCACACTCTTTTTCATTGCAAAAAC 7870 31 78.1 0 ............T........AC..-...TCA | A [7880] ========== ====== ====== ====== ================================ ========================================================================================================= ================== 9 32 94.4 43 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ACAACTTGAATTAGAAACATCGGCGATTCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAGCTAAAACAATGTTCAACGGGCATTTCGATTGTTTGTAAAAACCGACCAACCGTAACAGGCGCTTTGCATGCATGGAAGAATTCAAACCATGATTAAATAGGACCAACTTTTGTGCCCGGGCCGCTTCTTTATAGGTTAACCGTTTCAAGAGACAATGTTTATGATTGGACCCCAAGGGAAGCGATCACCTCCTTTCAAGGAGAAACGAGGACAACGAACATTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAATGGCCTTAAATATGTGTTAATATGTACAAAAATGTAATAATGTGATCTTGTTCACTGTGCTATGATAGGAAATAGAGGCAAAATCAAACGTTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : ACTTCCACCTCTTGTTTGATTCCTTTCCTAACAGACCTATTTTCTTCTTGTAAAAGGTCTTTCCGATAAATGCTAGTCGGTTTGTTGTTGAAGGGTTTGCAACTTCAATTCGTGTAAGGAGAGTGTAAAATAGCGTAGCCATTAAAACGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCGTGCGGCCGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAAATGATGGTTCCACCAGTCTTTGATCATATTATCAAAGATTGGATCGGTTTTATAGGATATCCTTCCAATAGAAGGTAGATCACCCATAT # Questionable array : NO Score: 8.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:-0.80, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 21591-22157 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCH01000046.1 Alkalihalobacillus clausii strain 7547-G contig00046, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 21591 32 100.0 35 ................................ ATAATTGATCTTTGTTTTGTAACTTCCGACTTTAT 21658 32 100.0 34 ................................ TCATTTCCCCAGCAATGGTTAACTCGTCACCCTT 21724 32 100.0 36 ................................ GAGGATGGCGCGGGCGTAACGCGTATAGACGTAGGT 21792 32 100.0 34 ................................ AAATCCATATGCTTTTAGTTTTTGAATTGCTGAT 21858 32 100.0 35 ................................ AACGATGTCCATTAGGTCGTTTAACGAGCAATTAA 21925 32 96.9 35 ..........A..................... TCGAAAATGGCGGCGACTTGCGCCACTTGCAGAAG 21992 32 96.9 35 ..........A..................... GGTTATTTTGCATAGGTCGCCTCCACTGAGATTTT 22059 32 96.9 35 ...............G................ AACGATATAGCGAACATGCTGCAAATCATCTATGT 22126 32 81.2 0 ..........A...........C.CA.A..C. | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 96.9 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ATAAACAAATATATAGGAACAACATCAGATTCAGTACAAGAAGAAACGATTCTCTTATCTCCTCAGGCGATTGAGCATACGCCGTCATAAAAAATGCCCCCTTCCCATCTATATAATCAATGTTTAGGATGCCCTCATTAAAAAAGCAAGCGTTACCAACATCCTAACACATGGACAAATCGTGTGTCTCTTATTGTAAAAACGGCGGTGGTGTTAGATAGAACCCTTAGTATTACAGAATACAATACGGTGGAACGATCCTTAAAGGCAAACGATTCTCGATTTCTTCAATAAGCATTCGCCGATGCTCACTTTTCTCTAGTGCGAACCCTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAACAGCCTCGAATATGAGTTTCTATGTACAAAAATGTAATAATGTGACCTTGTTGGGTGTGCTATGATAAGAATTAGAAGGGGAACCATTCGTTTTCGGTTGTATATTTCCGGAAAATGGGTGAAATTCGCT # Right flank : AAGACAAGCCCCACCGCTTGCTGCAACAAGTCTTTCCCTGCTCAATTCGAGTGCAAAATACGTTTCTCTTACTAGACCAACAAGTGCATCACACCTATAAATACACGTATTAAAACACAAAACTAGAAAGTAAATTCCAATTAAGGGAGGAGTAAACAATGGAAGAGAAAGAAATGTTAGAGCTCTTGTTACAGAAGGTAACTGACCTGGAATTGGGGTTGAAAGAGCAAAAAGCGCATAATGCTGTAGTTGCAAAAGATTTAAAAGAACAAAAAGCGCATAATGCTGTAGTTGCAAAAGATTTAAAAGAACAAAAAGCGTATAAT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5042-3205 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCH01000097.1 Alkalihalobacillus clausii strain 7547-G contig00097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 5041 32 100.0 34 ................................ ATCACTCTTTAGGATTTCCATTACTTTATGAGTC 4975 32 100.0 35 ................................ CTCACCAAACATGTGCTTCGCTGTCCGGTCAGAGA 4908 32 100.0 35 ................................ ACTTTCTACTACTGCTGTCACTTCTTCAGAAGGGA 4841 32 100.0 35 ................................ GGAGGAGGAAGACAACAAAATACCCCATTTAACTC 4774 32 100.0 39 ................................ GCGCTTGGTAAGTTTTGTGAACTCTTTGGCATGAATAAA 4703 32 100.0 35 ................................ AATTTGTTTTAAATTGTTTTTAATTCGAGCTATCC 4636 32 100.0 34 ................................ GGCGCTATACTAGTCCATTCTTTACCGTCTACAA 4570 32 100.0 34 ................................ TATGTCCTCGATCATACATCCTTTTGATACAAAG 4504 32 100.0 34 ................................ TAGGAAGCACTCTTACAAATTGGAAGGTGCAATC 4438 32 100.0 34 ................................ TCGTCATTCCTCAATCCGTGACCATAGTGGTTCG 4372 32 100.0 38 ................................ GACTCACCCTCTTCAACGTGCTTTAATAATGCTTCCGT 4302 32 100.0 34 ................................ TCCGAACGCGTTTGAGATAACCTTTATCACTAAG 4236 32 100.0 38 ................................ GTATACGTGATCGATTTAGTGCTTACGGTGATGACCAG 4166 32 100.0 35 ................................ AATTCTTTCACATAATTGTTAGCCCCCATAGTGCT 4099 32 100.0 34 ................................ ATTGATTTCATTTGTGTAGATTGCGCCGGAAACG 4033 32 100.0 35 ................................ TTCGATTTTTCATTTCCTATCACGGCACGTCCACT 3966 32 100.0 35 ................................ CTTACAGAACTCTACAATGTAATCATAGGAATGCC 3899 32 100.0 34 ................................ GGCTACAGGGTACTCGAACTCTGAATCGTCTACC 3833 32 100.0 33 ................................ GTTTACAATAATGTCCTAATGGGGGACCCTGAA 3768 32 100.0 34 ................................ GCTACAGAAGAATACGATAGCTCCAACCAATTTG 3702 32 100.0 36 ................................ ACAATCATATCGGTTTCAATTATATTTTCCAGATAG 3634 32 100.0 33 ................................ CAAAATCCACAATCACTCATGCAGTCTTTTAAA 3569 32 100.0 34 ................................ GGGTATTTATGATTTGTTGTACGGACACAACAGC 3503 32 100.0 33 ................................ AACTTTAATTTCTGTAATTTTAACTTGTTTTTT 3438 32 100.0 35 ................................ TTTCATAGTCTAGGTTTCGGACGACTGTAAAAATA 3371 32 100.0 33 ................................ CCCTGTGTCCATTCCTGATGACTGATTGACTGA 3306 32 100.0 35 ................................ ACAATCGTATGTCCGAGACTACCAAAACAAAATTG 3239 32 90.6 0 .......................C..C..T.. | C,AC [3207,3214] ========== ====== ====== ====== ================================ ======================================= ================== 28 32 99.7 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AAATCGGTGAAGCTTTAGGCGGAGTGTCGCAGCAACAGGTGACCGCCTGGAATCGTAGTATTGCCAAAAAGATCTATCAAAAGCTTCAAAAAGAACCGCCATTTAATAGTAGGGGTGGCAAACGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCTTGATGATAAAGGGAATTTTATCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTGATAATAAAACGGCTAAAATTGAGAGTTGAAGATTAAATCCCAAATTGCAGAAATATTTGTGGGGTAGATCCCTTTTATTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGTTTGAATATGAGATAATATGTATTAAAGTGTTAAAATGTTGTACGCGTTCCGTGTTATGATTAAGGAAAGAAGCGACTTTCCCTAATATTTATTGTTTTATTCCCAATAAGTAGGGGAATTTCGCT # Right flank : TTGTAGAAAAAGTCACCCTCGTTGGGTATGCGTAGATTAAAGTCCCAAAAGACATCTCCTTCCATTTCACCTTTGAAGTTGCATTTCGAGAAAGTCGTCATACTTATTGCTTTGAGCGGATGGTTTCAACATCCACTCTTTTGCGTGAATCCTTTTTTAACTCAAGGGACTTCTTTGACAAGCGTCTTCTTAGAAAGTCATAGCGATATGAACCCAGGCAATTACAAATGATTACCAACGAGAAAACGATTATGATGCATGTTCTAGTTTCTGAAGAGGTGCCTTCCTAAAAAGTGATGCAACTACCGATCAGTTCAATCAATCTAAAAAACCCCTTAAAAAAACACCACCAGATCTTAATGCAACAGGAATATCTACAGCTTTGCTTGACGCTATAATGAGTAGACATATGAGAGGAGGAGTTAAATGAAATCTCCATTGAAAGCGCTTACTGTTTCGGTGATTTTATTGTTGGCTGGTCTGGTTTTGGGCGATGATCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 6034-5801 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCH01000097.1 Alkalihalobacillus clausii strain 7547-G contig00097, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 6033 32 100.0 33 ................................ CTTGGTGTTACCAATTCCTGTTGCTTTATAAGG 5968 32 100.0 36 ................................ ATGAACCTCACAATATCTTTCACGCGTTAGCTTCCC 5900 32 100.0 36 ................................ CATGTAGCTTTTATTGACTGGTATTACTTCGATCAC 5832 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 100.0 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : ACTGAAATTTATGACCGGTATCAGCTGAAGCTTGGGAAAAAG # Right flank : TTTAAGCACTCCATCGTAGCAGCAGCTTGTACCTGTCGCACTCTTTATGACTTCGTGGAAAAACAGAAAATATCGGTTATGTACTAAGTAAATACAGAGGACGTGAAATTTTATATGACTTGGCATAACCAAGATCCTTTAAACCTGAGTAAGGAAGAGTGGATAAATCTCTTGCAGGATGAAAAAGTTTTCAACAAGATCGGCTTAGAGATAGTTTTCTTTGTATATAAGCAACCTAATTATCAATCAAATGCAACGGAAATCGGTGAAGCTTTAGGCGGAGTGTCGCAGCAACAGGTGACCGCCTGGAATCGTAGTATTGCCAAAAAGATCTATCAAAAGCTTCAAAAAGAACCGCCATTTAATAGTAGGGGTGGCAAACGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCTTGATGATAAAGGGAATTTTATCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTGA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 38271-37974 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCH01000096.1 Alkalihalobacillus clausii strain 7547-G contig00096, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 38270 32 100.0 34 ................................ CGTAAACAAACTCTTTCTTGATCGGTATGCAAAC 38204 32 100.0 36 ................................ CCGTAGCGAAGTGGGTTATATGTCAGATTTGCCGTA 38136 32 96.9 33 ..........T..................... TGGTGTAAGGGTTAACTCTCCGCCCTCGTTTTG 38071 32 93.8 34 ..........T.A................... TTCAGGGTCTTTAAGGCGTATTTTCACTTTATTC 38005 32 71.9 0 ..........T............CTCGTTCG. | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 92.5 34 GTCGCACTCTAAGTGAGTGCGTGGATTGAAAT # Left flank : GTCAAACGATAAACGGAACGGTTCAGGAAACATATTTGCTTCTCAATCGTAGCAACTAAGAAGACATAAAAGCGCTTTACATAAGCTCGGCAAGAATGGCCCTGGAAGAAGTAGAAACGGTTTTCAGGCACTCGCCTAGACAGCGTCTTAACAGCAAGGATCAGGCCCATTTCATACACATATCAAACAAGAATGGCGAAACAGATACACAACTCATAGGGGAGAAGGGATGTTAGTAGGCAACCGACTCCCCTCAATCGTTTCTTTGTGAGCAAGCGAAAAGTTCTGTATGATTGAAGAAGATCAAAAAACACTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAGCTTAAATATATAATATGTGTAATGATGGTAAAATGCTATACGTATGCCATGATAGAATAAAAGAAAAGAGCGGCTTTTTCCTATAATTGATTGTTTTCCAGCCAATAATTAGGGGGATTTCGCT # Right flank : ATGCAACCTAATAACCAGTAGGTTATCGACGTAAGGCATTTGGGAGGCGGATCTGCCATAAAACGAAAAACAGTAGTTTTAGGTATAAGTGGGTTTCTAGTAATTGGTATGGCTGTAAGTGCAGTCATCTTATTGAATGCGGACAAGGAATATGTGCCAGGGGGAACTCAATTAAAAAAGAATGAAAGAGACTCGATTGATTATTGGACCAAAGACAACATGAAAAAAGCTGTTCCAGGGGCAGGAATGGACGAATAAGCCTGCTCCTCGAACAGCTTTTGCTAACTAGTTGGTGTTTGGTTTCGTTCGTTATTTTTTTCTGAACTGGTGTTTAAAGCGGTTAAACGGGGTGAAGTATGAAACTGCGTAGTCTAAGTTAATGAGCTCGCTGTATTCAAAGACGCGCCCGTCGTTAAGAATGCCGCGATTGACAATTTTCATGGCTGCGATGTCTTTTTTGCAATTTAACAAATTGGCTTGTTCTCTTGTCACGTTGACGG # Questionable array : NO Score: 8.60 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTAAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 45326-44697 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCH01000096.1 Alkalihalobacillus clausii strain 7547-G contig00096, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 45325 32 100.0 35 ................................ ACTTCCAGACGTAACTTGATTAAATGGGTATCATG 45258 32 100.0 35 ................................ CAATATACGCTCGGAAATCCTTTTTAAGCTTAACG 45191 32 100.0 35 ................................ CAGAAAGTCAAAAATTACGAAAACCGAACACCCTA 45124 32 100.0 34 ................................ TAAAGAGCAATAGCAATACATCAGATAACGCTGC 45058 32 100.0 35 ................................ GATCCTTTACGAAGCCGACCACGCGGAGCAAGTCG 44991 32 100.0 33 ................................ GTAAGTCTTGCCTGTCTCACGCGCCAGCTCCAT 44926 32 100.0 34 ................................ GCTCACTCCTCCGTGTCTCCATTTCGGTCGCTAC 44860 31 96.9 35 ..............-................. TGCTGCAAAATCGTTCTATCACCTGATGCCTGATT 44794 32 100.0 34 ................................ CAGTAAGGAGGAGTAGTGTCATGAAACATGATTT 44728 32 75.0 0 ..........TCA...C...A.......C.CC | ========== ====== ====== ====== ================================ =================================== ================== 10 32 97.2 35 GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Left flank : GAAATGGCAAAATCAAAAATCCGCATGGTTGGCAGTGAAAACACGGTAGTGCCAGCATTTGCGTGAAAAGCGTAAGCCCGGAGTCCTTCACCTTCGCTTGTTAGGCTATGTACTAACAAGCGGAGGTGTTTCTTTCATTAATTGGGAAGGGGGAGAAGAACTCAATCGAATAGGTGTATAAGCAAGGAACTTTCCTTACGCCAACAGGAGTTTTCTTATCAAATATAGTAAAATAGACAGTAGTAGAGACAGACACAATTGACGAGGGAGATTAACATTTACAATTATTCATTTTAGTATTTTGAACCTGTGATTCTTTAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTGAATGTGGGTTAATGTGTGAAAAAGTGTTAAAATGTTGTTCGTGTCCCATGGTATTATATAGGAGAAGAGCGGCTTTTTCCTATTATTGATTGTTTGGCTGCCAACAATTAGGGGAATTTCGCT # Right flank : CTCGTCACTGCTTCTAAAGGAAATGCACAGTTGTAGCGGTGTTGGAAAAATAAGTTCTTTGTCGTGATGATAGAACAGCAGCTCATAGCTTTGGCAGTTAGTAAAACATGTCTATCTTCACAGTGATTCCAAATATTCACCATTTGTCTGGATCGGTGAATGCCGAAAATCTATTTAAGTTGTTGGAGGGAGTAGTCAGCATGTTAACAAGGGAAGATATCTTTAAGCACGTCAAAGAAAAATTCCGTACATCGCCTGATTATCCATTTCAAAAATTTCCAACCTATGCTGCTTTGAGACATAAAGCGAATGGAAAATGGTATGGCCTTGTTATGAATGTTCATCCAGAAAAATTAGGGTTGGATGGAAATGACGAAATAGATATTCTGAATTTAAAATGTCAACCTGAAGTAAGTGGCAGTTTGAGAAATGGAAAGAGTATTTTACCTGGATACCATATGGATAAGGAAAATTGGATATCAATTGTTTTGGAACGTGTA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 53447-52612 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCH01000096.1 Alkalihalobacillus clausii strain 7547-G contig00096, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 53446 32 100.0 34 ................................ ATATATTTGTTTGTTTCCATGCCGTTGTATTCCG 53380 32 100.0 33 ................................ CCGTCGCTCCGCTCGCTCTTATAAGCCTGCCCC 53315 32 100.0 36 ................................ GCTCCTCTTTGTTATTTGTTATTTATACTGTAACAT 53247 32 100.0 35 ................................ ATTGGTCCTTGTTAGAGGAGCTAAACAAGAGATTT 53180 32 100.0 37 ................................ CAAAAATAAAACCCCAATCACACAAAAGGAGCCAATC 53111 32 100.0 36 ................................ AAAGGCTTCGTGCGTGGCGTTAGGTATCAGCCCAGC 53043 32 100.0 34 ................................ TCCTTTTTTATGTTTTTTAGTTGGATAAAGAGGA 52977 32 100.0 36 ................................ CTCTACGATATACACCCGACCATTCGGCACAGCGTC 52909 32 100.0 34 ................................ TTCTCCAGCGCTTTTTGGAGCTTGCGGTCAGATT 52843 32 100.0 34 ................................ ATTGTCCCAAACAGCACGTCGTACAAACGCCTTT 52777 32 100.0 35 ................................ GTCCAATTCGCGCAGTAGACGGTTAATGCGCTGCC 52710 32 100.0 35 ................................ GTGGTATCAAGTTCGACGTAGAATCAGCGAATAAG 52643 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 100.0 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : GAAGAGGAAGGGGAGGCCCCGTTGGCGGTATATCTTGCTTCTTTTAAGCGAACGAATTTGGAGAATCTACTAAACGAGCTGGAAAAGGCGGCGAACTTGCCCGCGTATCGAACCAATCTGTTTGAACATTAATGGTGTGGGGACCCATGAAGGAGGCATTCCTGTGATCGAAGCATGGACAAAAAACACTACGAGACGATCCCCTCTAATCGTGGCTTTCGGTCATCTACCAGCTAAAAAAATGGTTCGTTAAAAAAATGTTGAGATAACTCATGGGTTGTTTTTCAGTTTTAACTTCCATCCCAAACACCTACCATTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGTACTCAAATATGGTTGAATGTGTGAAAGAGTGTTAAAATGTTGTTCGTATCCCATGGTATGATATAGGAAAAGAGCGGTTTTTCTCTAGGATTCATCCATTGGTTTCCAAAAATAGGGGGATTTCGCT # Right flank : ACAAGTTTTTATCCGATTTTATTTTGGAATCGATGTCGCACTCCTTACGAGTGGCTTGTCTAAATAGGGTCGAGAGCAGGCCCTACCGCGCTGTTACCCCAGCCTGCTCGCGGAAAATCCCTATTTATGCAATCTTGCAATTTCCATGCCTGGCGAAATGGAGCGACCGTTTTTATTGCTGTGATTCGTCTTAATAGAAAAAAGGACTAGCTACAGGAGGGATTGAAATTGGAAATTCGTACAGTGAAGGGCTCTGACTACTATGTCATTTCCCCACTAATTAATAAGTGGTGGGGTGGAAGAAAGATGTCGGATAAGTTACCGAAATTATTTTTCGACCATTTTTCTAATACAAGTTTTGTTGCTGAAAGGGATGGAACACCTGTTGGCTTTCTAATCGGATTCTTTTCTCAATCTCATCAAAAAGTAGCCTATATACATTTCGTTGGTGTCCACCCTGATTATAGAAAGCAAAGCGTTGGCAACCTATTATACAATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 60125-59890 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPCH01000096.1 Alkalihalobacillus clausii strain 7547-G contig00096, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 60124 32 96.9 35 ..........T..................... GAGGATTTATTCGGCAATGAATCGCCTATGATGTA 60057 32 100.0 37 ................................ CAAGCGATGCGGGAGCTGGACGCCGAGGACAGCCTGA 59988 32 100.0 35 ................................ CTCATCGCTGTTTGCGCAATTTGACGCAAATAGTT 59921 32 90.6 0 ..........TT..............G..... | ========== ====== ====== ====== ================================ ===================================== ================== 4 32 96.9 36 GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Left flank : GAAAAGTGCCTCCCACGAGAAATTGATGTGACGCACTTGCAAGACACGCTGGTGAACCAAGGGGCGATATTGAGCTGATGAGGGGAGGGGTATTTTCGAATAAAAGGATTTAGCATTGGTGTTTGAAGAGGGACTACCTTTAAAAATGAGACGAACAAGAACTCCAAACATTGGGTTTTGGAGTTTCTTTTTTGGTGTTCGTGGTATTAAAATGTGGTGGGATTAGAAGGATAGGTGGGAGCAACGGTTTAATTTGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATCACTAGATCACCCGCACCGAAAAAGAGTCTGAATATGAGTAAATGAGTATGAAAATGTGAAAATGTGGTTTATGTTCCTTGATATAATGAAGGGAAAGTGCGACTTTCCTATTTTATTTGTGGTTTTATTTCCAGCAAATAGGGGACTTTCGCT # Right flank : GTGTTTTAAGATCCTTGTACGGTGTGGCTGCGTTTCGCCCTTCTTGTAAGTGCGCCAATTAACATCCACATGAATCGACGTTCGCTTGCGATAACAACTAATAAAGGTACAGAAAACCAAATAAGCAATATGAGCGCACCTACGCCCATATTGCTTATTTTCGTCTTTGTTGCCTATTTTAACGCTGGCCAAAATGCTTTATTCGCCTCGATTAAGTCGTCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTTGATAATGTGATGGCTTGCCATAGTTTTTGGTAGGAACCTTCTTCAAACGCTTCTACTACTAATTTTTCGACGCCAACTTGTTGCTCCATGAGGCTCTTTTGGAATCTAGGGATTTCTCCGACAACTAGTTTTTCTGGGCCGTTGCTGCCGACGATGCACGGGATTTCTACCATTGCTGTTGGGTCAAAGTTCGTGATGGCGCCATTGTTTTCGACAATCATTAACATCCGTTCTTTTGT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //