Array 1 756-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAYF01000021.1 Streptococcus oralis strain JPIIBV3 Contig21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 755 36 100.0 30 .................................... TAAAACCGTAATGAAGCCTCAAAAAACTGT 689 36 100.0 30 .................................... AGACACCGACAGTTCCTGCTGAGACACCAA 623 36 100.0 30 .................................... GCAAAACCACTTCAGAAGATGAATGTGTTT 557 36 100.0 30 .................................... CGCTGAGTTGAAAAAATCTGGTGTACTTCT 491 36 100.0 30 .................................... GCGACATACTTCATCGCTTCGGCCATGTCG 425 36 100.0 30 .................................... AAGCTCTAGGCGATATATTTAGAACTTCGC 359 36 100.0 30 .................................... CAATCGATGAAGCGAGGCCTACAGGCGGCT 293 36 100.0 30 .................................... TACTGGGAAATTGAACGGCTTTACAAATAC 227 36 100.0 30 .................................... ATCAATTGACCGCGACGACCTTATTGACAT 161 36 100.0 30 .................................... CAAATTACCAAAACCTGACCTTGTAATAGC 95 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAACTCAATGACAAACCAGAAGTCAAATCCATGATTGAAAAGCTAGTTGCTACGATTACAGAATTGCTGGCATTTGAGTGCTTAGAAAATGAACTAGACCTGGAATACGATGAAATTACCATCCTAGAGTTGATTGATGCGTTAGGAGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAAATGTTAGAAATTGTCCAAGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTTTTCATCAATGCGACCGCCTATCTATCAGAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTGAGAGTCTTATTTGTTGAACCTCGAAAAGTCTATGATTTCCCGCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGGAACCTGACGAACTGAAGTCTAGCTGGGACGAATGGCGCGATTACGAAATTTCGTAAGAAAAATTTTTCCACGAG # Right flank : CTAATTAAGACCCTAAAAGGTCCTACCGTACGTTTTAGAGCTGTGTTGTTTCGAATGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 131103-129683 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAYF01000007.1 Streptococcus oralis strain JPIIBV3 Contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 131102 35 97.2 30 -................................... CCGGAACATAACTCCGCAGAAGAAATCCTT 131037 36 100.0 30 .................................... TTCAGTTTTCCTGTATAGCCGCAAGTGAAG 130971 36 100.0 30 .................................... TTTGCAGCAGGGAAAACAATCCCGGACAAA 130905 36 100.0 30 .................................... AATCAGGAAAATAAAAAAATGAAACTTAGA 130839 36 97.2 30 ............A....................... ACGTACGCAAGAACATTCTTCCGGACATTG 130773 36 100.0 30 .................................... TCCCAGAAATCAGCGCACCGCTGACAATGT 130707 36 100.0 30 .................................... TAAAAACTAAGCGATTTTGACGAAAGGAGG 130641 36 100.0 30 .................................... GTATTTTGATTTCTTTAGAAAATTCTACTT 130575 36 100.0 30 .................................... TAACTCCAAACTTTCGTCCAGTCTTCTTTA 130509 36 100.0 30 .................................... AACTCTCTATTAAGCTCATATTGACTTTGT 130443 36 100.0 30 .................................... GATTGAATGTACATGAAATAGGGAGCGTTT 130377 36 100.0 30 .................................... ACCCACTCACAATAACCTTATATTTCCTTT 130311 36 100.0 29 .................................... TCACATTATCAAAGAGAGCTGTCCAGTTG 130246 36 100.0 30 .................................... TCAACCGTCAGAGCTCCAGCTTTAAGCATA 130180 36 100.0 30 .................................... TCCGCTTGCTCTCTGCGTTCTGCTTGCTTG 130114 36 100.0 30 .................................... CGCATCGATAGGGAAGTGGCTGGATTGAAT 130048 36 100.0 30 .................................... TGGGATTGTGAAACGTTTAGACAAGTTGAT 129982 36 100.0 30 .................................... TCCTATTTAACTGGATTGTCAGCTCAATAT 129916 36 100.0 30 .................................... GATTGAATGTACATGAAATAGGGAGCGTTT 129850 36 100.0 30 .................................... ACCCACTCACAATAACCTTATATTTCCTTT 129784 36 100.0 30 .................................... TCCGACAGTAGTTGAAGCAATAACAATGCT 129718 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.6 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : | # Right flank : AAGCTACTCATTTTTTGAGTAGCTTTTTAACTATTCCATCCCTACACATAGCTCATTCCCTTATAGCATAGGAAAATAGCTAGTGCGATAAAAAGTACAGTTGCTCCGATTCGCTGGCTGGTACTATACATCCTTCTCTCCCATTTGACTGGAAAGATAACTGCCAGAAAAGCACCTCCTACTGCACCTCCGATATGGCCTGCTAGGCTAATTCCTGGAATCAGAATACTTCCAATGATATTTATCACCAAAAGTGTCAGATAGGATTGCCCCAACTGCTGGATATAGGGGTTGCGAGTCGCATAGCGCAAAACGATAATCGCAGCAAATAGTCCGTAAAGAGAAGTGGATGCTCCTGCTGCTACAACTTTCGGTGTGAAAGCAAAAACAAAGAGATTGCCCATCATTCCTGATAAGAGATAGAGAAGGAAGAACTGCTTGGAGCCGAAAATCTCCTCAACCTGTCGTCCAAGAAAGTAGAGCGAAATCATATTGACAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //