Array 1 224251-226353 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQWV01000017.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NCTR350 NCTR_350_contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 224251 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 224312 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 224373 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 224434 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 224496 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 224557 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 224618 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 224679 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 224740 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 224801 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 224862 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 224923 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 224984 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 225045 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 225106 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 225167 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 225228 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 225289 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 225350 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 225411 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 225472 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 225533 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 225594 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 225655 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 225716 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 225777 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 225838 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 225899 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 225960 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 226021 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 226082 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 226143 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 226204 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 226265 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 226326 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 243986-245967 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQWV01000017.1 Salmonella enterica subsp. enterica serovar Typhimurium strain NCTR350 NCTR_350_contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 243986 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 244047 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 244108 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 244169 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 244230 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 244291 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 244352 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 244413 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 244474 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 244535 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 244596 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 244657 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 244718 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 244779 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 244840 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 244901 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 244962 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 245023 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 245084 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 245145 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 245206 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 245267 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 245328 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 245389 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 245450 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 245511 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 245572 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 245633 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 245694 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 245755 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 245816 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 245877 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 245938 29 100.0 0 ............................. | A [245965] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //