Array 1 1726-172 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNYZ01000036.1 Escherichia coli strain MOD1-EC6006 MOD1-EC6006_36_length_45704_cov_35.6571, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1725 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 1664 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 1603 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 1542 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 1481 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 1420 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 1359 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 1298 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 1237 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 1176 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 1115 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 1054 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 993 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 932 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 871 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 810 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 749 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 688 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 627 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 566 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 505 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 444 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 383 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 322 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 261 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 200 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15285-15983 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNYZ01000017.1 Escherichia coli strain MOD1-EC6006 MOD1-EC6006_17_length_110380_cov_33.7123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15285 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 15346 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 15407 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 15468 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 15529 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 15590 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 15651 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 15711 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 15772 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 15833 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 15894 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 15955 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGAGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //