Array 1 300136-300567 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJUG01000002.1 Enterococcus thailandicus strain NBRC 101867 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 300136 36 100.0 30 .................................... AGATTTTTGAGGGTGACTTTGCAGGTGCTT 300202 36 100.0 30 .................................... TGCTTAAGATGTAATGATGAAACCGTCATT 300268 36 100.0 30 .................................... CCATACGATCCAAGAGTAGACTACAACAAC 300334 36 100.0 30 .................................... CCATACGATCCAAGAGTAGACTACAACAAC 300400 36 100.0 30 .................................... TGTCGTGTTTTGGATTATGACTTTGCTGCT 300466 35 91.7 30 .............-TA.................... TAATAGATTTGCTGAACAAGCTACTCAAAT 300531 36 88.9 0 ............................GG.T...T | A [300557] ========== ====== ====== ====== ==================================== ============================== ================== 7 36 97.2 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : GAAGAACGATTTATGGATGAAGATGGACAAGTAATTGATGAGTATCGGATTGAATTTATTCGAGACCACTTAGTTTATCTTTGGAAAGCAATTGATGACGGCTGTAACATCAAAGGATATCATTTATGGACATTTATTGATTGTTGGTCATGGATCAATTCGTACAAAAATCGTTACGGACTAGTTTCCTTAGATCTACCTACTCAAAAAAGAACAATCAAAAAAAGTGGCGAATTTTATAAAAAACTAAGTGACGAAAATGGATTTAATTACGATATTGATTTGTTAGTTCTTTAAACAATTATATCCCTGTAGCTCAGACTCATTCAGCAACCAAAAACTGGTTATGACAGAAAGTCAGTTTATGCTATACTAAAGAAAACTGTTCGTTGACATTCAAATAGCCAACATATTACCAAATAAATAGAAAGAAGCATTCAAACTGAAGCCTTGCTATGGGCGAATAGTGCGATTACGGAGCCTCAAAAAATTTATCCGAG # Right flank : TGTATGATAAAAAAGGACCGCCCATTGAGAGCTGGTCCTTTTTTTGTTAAATTTTTTGATCAATTTCAGTGACAGTTATTTGTAGCACACGGCTTAAGAACGGAAACTTTTCCTTCATTTCATTAAAAATTGGTCCCCCTGTGATAAACTCAGCGGTTCCGTGCAAATGGAATCCTGCACCAGGTCCTACTGTACCAATGACTTCTTTGCTTCCAACGGTTAACATCACTTGATTATTTTTTTTGATATCTTGTTGAACACTGTGCATCCCAGCTGCAGGAATATATAATTTATCGCCACTGATTTGAACATAGCTATTCCAAGTGTTCACAGCATGAAAGCCCGGAGCATTTTCACTCGAAGAAATTATTGTTACTGCTCCCTCATGTCTCATTACCTCTAAAAATGTTTCATTCATCATTTTGCAGACCTCATTTCAATTATCGTAAGTTTATTATAGCACCACTAAGTATTTCGTTCACTTTCTAGTAATAAAAAAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 314799-314169 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJUG01000002.1 Enterococcus thailandicus strain NBRC 101867 sequence02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 314798 36 100.0 30 .................................... TGATTTTGATACCCTCCCACATCAAACCAA 314732 36 100.0 30 .................................... TGAAGCTAACAATATCTGAATGACTTTATT 314666 36 100.0 30 .................................... ATATAAATTAGAAGAGTCTTATTTAACTAC 314600 36 100.0 30 .................................... CAAAAGGCGATACGCACGATTGGGAAGACA 314534 36 100.0 30 .................................... TATGATGTTCGCTTTGAAAAAGATACCTAT 314468 36 100.0 30 .................................... TATATTCAAAACAATCATCCAAACTCGCGC 314402 36 100.0 30 .................................... CAGCCAAAAGGACAATTACGTATCGCAGGT 314336 36 100.0 30 .................................... GCAATCTGCACGAATGAAGGCATACAAATT 314270 36 100.0 30 .................................... TGAACTAATATGTACTGCCCCTCAATATTG 314204 36 83.3 0 .............................A.TTTTG | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 98.3 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : TCTGTTCAACTATTTTTCGATCCAACGACCCATCAAATTTTGGGTGGAGCTGTGTTATCAACTTATGATATTACTGCTCAAGGAAATGTGTTAGCTTTAGCAATCCAACAAAAATTAACACTAGAAGATTTAGCTGAGGCAGACTTTTTCTTCCAACCAGGATTTGACCGTCAATGGAGTCTGTTGAACCTAGCAGCACAACATGCTTTAGCTGAAAAAGAATTTATTGAATAAAGCGAAAATTGAATCAACCTCCAAAAGTAGTCAAATGGACAGGCTTTTGGAGGTTGATTTTTTCATTTACAATCAAATGATAGCCAGTATAGTGAAAAGCTTATTGTTTTCCAACTATTTTCGTTGCAAACAAGGTTTCATGCTATACTAAAGAAAAGTGTTCCTTGAAATAAGAATAACCAATGACGTTAACGAAGAAGCATTCAAACTGGAGTCTTGCTATGGGCGAATAGTGCGATTACGGAACCTCAAAAATTTGAACCGAG # Right flank : ACTGAAACTGTCATTGTTTTAGTATGTGTTTATAAAAAGTAGCAGAAAGAATACGTGATATTGACTCAAGAATAACTGATGATAATTTGCAGTAAAAAAGAACGCAGTTTCATGTAGTTCCTTAAAAGTAGGGAGCTATTCATGAAACTGCGTTTTTTTGATACCTAATTTAATTAACGAATAGTACCTAGAAACATTTCAAAATTTTGCGTATCAGCTATTTTTTGTTGTAGTTTTCGGTCTTCTACAAGATCAGATAAATACTCAAAAAAAGCTTGGAGTTTGTCTTTGTCATCTTCAGCAACGGCAAGTAAAAAGATGATTTTTACGGTTGCATTCGGACGCCAAAAAATCGGTTCTTTTGAGATGTAAACAAAAATTTTTGTTTTCTGGATGGAGGCATCAATAGCATGAGGGATTGCGATCAACTCAGTGATATTTGTTGGTGCAATTTCTTCTCGATCAATCACTTTTTCAATAAAATCTTCAGCGACAATGTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 491-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJUG01000020.1 Enterococcus thailandicus strain NBRC 101867 sequence20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 490 36 100.0 30 .................................... TACGGAAGACTGGATTCGAACCAGAGATAT 424 36 100.0 30 .................................... GCTTTTTAGTCGTCTAAATGAAAAGCTTAC 358 36 100.0 30 .................................... TATTTGTCATTGAACTTCTCTTACGTTCCT 292 36 100.0 30 .................................... GGGAGGTTTTATCAAAACAAACTTCCTATT 226 36 100.0 30 .................................... ATATATGTTTTTCCTACTGTGAATACATTT 160 36 100.0 30 .................................... TATCTTGTTTACATCTATTATAATAGCATG 94 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : TATATTTTTTCTTGTTGTGCGTATGACTAAAGCCAATAACACTGACAAAAAAGAAAATTGTTGCGACAGGTCTACCAAACCAGTCTAGCCAGTTAGGTGCTCCAAATGGAACAAACATCTGATGGATATGATCAATAAACATTAAGACAATGCCTAACATTTTTAAATCAAATGTTGATAGGCCTTTTTTGGGTGTATCAATCGTCAAAAATAATTCCTCCTAACTAATAATAACTATATGTTAACAATATGATTGATTGAAAGGCTAGTGAAATAATATAGAACGAGCGAACAATTTTGTCACAAGAGATTTTTTTGTTATCGATCATATACTGGTCTTTATGAGGAAAGAGTTGGGTAGTTGGGGTAGTGAATTCATGGTATACTAATAAAAAAGATCCTTGAAATCTAAATAAATAGATACCAATAGAAGCATCCAAACTGAAGCCTTGCTATGGGCAAATAGTGCGAGTACGGAACCTCAAAAATTTTGAGCCGAG # Right flank : CCTTTCATTTTTCCGATAATGTCATTTGCTGTTTTAGAGCTATGCTGTTTTGAATGCTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 286324-285890 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJUG01000003.1 Enterococcus thailandicus strain NBRC 101867 sequence03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 286323 36 100.0 30 .................................... TTGCGTTAACTCTTCATGTTCATCAAAAAC 286257 36 100.0 30 .................................... TCTTATTTTCTGTTTCTGTGACTGTATTTA 286191 36 100.0 31 .................................... AGTTAACTATTATAGAAACCAGTTTATTTAT 286124 36 100.0 30 .................................... GGATGGGACTTTAGGAAAACCAATTGACCA 286058 36 100.0 31 .................................... TTATACGGACTTGCACGAAACCGATTCTTAA 285991 36 100.0 30 .................................... AGATGTTGTATTAGATAATTGTATGGGTAG 285925 36 91.7 0 ............C............A.......C.. | ========== ====== ====== ====== ==================================== =============================== ================== 7 36 98.8 30 GTTTTAGAGCTATGTTGTTTAGAATGCTTCCAAAAC # Left flank : TGCAAATCCTTACTTGGCAATGGCCGTATTATTGCAAGCCGGTTTAGATGGTATCCGTCGTGAATTAACACCGCCAGATGCGGTTGACCGTAATATTTATGTGATGAATGAAGAAGAACGTGAAGCAGCGCAAATTCAAGATTTACCTTCAACGATTCACAACGCAATTAAAGAATTGCGTAAAGATGAAGTGATGATCGATGCACTAGGTCAACACATCTTCTCAAACTTTGTTGAAGCGAAACGTTTGGAATGGGCAGCTTTCCGTCAAACAGTTTCTGAGTGGGAAAGAGAACAATATTTAGAACTTTATTAAGTCAAAAAAGTAGTAAACACAGAGGCAATCTTTTGTCTCTGTGTTTTTTCATCCATTATGTTTTGTTTCCCACAGGTTTATTTTCCCATGATATAATAAGAAAAAACAATTGTTGAAGTACTTTAACTGAAGTTTTGCTATGGACGAGTAGTGCGATTACGAAACCTTGAATTTTTTTGCGAGG # Right flank : CAACAAATTTTTTTGAAATCGCAATCATCAAATTGATGTCTTGACTTTCAATTCTGGAGCTTGTATTATACTCCTTGGGCACCCTTTTAAAGGGTCAGAAGTTTACAGAAATTTCAGCTCCCTATTCTTGTTAGAAGAATAGGGAGCTTTCTTTATTTTTTCTGGGACTTTTCCTGCAGATAAAACAAGAAGGAGTTTTTGAATTTATGACAAAATACATTTTTGTAACTGGCGGCGTTGTATCTTCGATTGGTAAAGGGATCGTAGCAGCTTCATTGGGTCGCTTGTTGAAAAATCGTGGCCTAAAGGTAACTATCCAAAAATTTGATCCGTATATCAATGTTGACCCAGGAACAATGAGTCCTTATCAACATGGAGAAGTATTTGTAACAGATGATGGTGCGGAAACAGACTTAGACTTAGGACACTATGAACGTTTTATCGACATCAATTTGAACAAATACTCCAATGTTACCACAGGAAAAATCTATTCTGAAGTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTAGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 101186-101749 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJUG01000005.1 Enterococcus thailandicus strain NBRC 101867 sequence05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 101186 36 100.0 30 .................................... AAAAAGAACTAGAAGAAATTATTCAGTCAA 101252 36 100.0 30 .................................... TACGTTCCATTTTCAAACGCAATTATATTT 101318 36 100.0 30 .................................... CGTTATGAGGTAACAGATACTATTCTAGAC 101384 36 100.0 30 .................................... TACAGACATTGCAGGCGGAGAAGCATTACT 101450 36 100.0 30 .................................... AGAATTAGATAATGTAGAAAGTATTTGTTA 101516 36 100.0 30 .................................... TGTGTCGTTGATAACATTTTCTTGAATGTG 101582 36 100.0 30 .................................... TAAAGTTTGTTTTCAACAATGGGGTTACAA 101648 36 100.0 30 .................................... TGCAGATAAATTTTTTACAGCTACTTTGGA 101714 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : CAGAAATCAAAACCAAAATTGATCGTTTGTCGATGGAAATTGCCAAAGTGATGCAACACGAATTGTTAGAACATGCGCTAGATCTTGAAGAAGATGAGTTGACCCTCATGGAGATATTTAAGTGCTTAGGAATACGGATTGAAACGAAAAGTGATACCATTTTAGAAAAAATGATTGAAGTAATCCAAGTATATCGTTATCTAGTGAAAAAGAAGCTATTGGTATTCGTGAATGCTTGTTCTTATTTAACCACGACAGAATTACAAACATTAATTGACCATATTTCTTTATACAATGTAGATGTATTATTTTTAGAACCTCGACCAATTGAGGGTGTTGCACAACAAATTCTAGACCAAGATTATTTTTTGACAAGAAGATAACAGATAGGACTAATTTTTTCGTTCTTTGACAAGTAAATCAAACCAATGAAGCATTCAGGCTAAAGCCTTGCTATGGGCGAATAGTGCGATTACGGAACCTCAAAAATTTGAGCCGAG # Right flank : CGACTATTTTGAAAGTAGTTCATAATCCACTGTTTTAGAGCTATGCTGTTTGACGGACAAACTCATCTGTTTCTGAAAGCAAGCAGTATACATTCATACGATCAAATAAAAAAAGATGTAACAAATGGAAAAATAACAATGATTGAAGATGCAAAAAATTTTGAAGGAAATCCAGTGGTGAGGGTTATAGCACAAACAAGTAAAGAAGATGTCGGAAAGAGTGACACGCTAGGACGAAGCGATTTCCAGTTCCTAGGTGCTAATACTGAATGATTTACACCGCTACTTAGCAAATAGATAGGCAAAAAAAGTGTAAAGGAAGTATTTATGAAAAAGGTTGTTGTTACACTCATAATAATAACTATCCTTGTCGTAGGGTTTCTTTTCGTAGGCGCTAAACGTACAGAAAATCTACTACAAAATAAGGTTGAAAGTACCACTACAAGTGATGAAGAGGCAAATGACAGTTCAATCCAGTTCAAAATTATTGATTCAAATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //