Array 1 9047-7554 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFJ010000012.1 Lactobacillus amylovorus strain Bifido-178-WT-3C Contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 9046 28 100.0 33 ............................ TACAACTAAAGTCCCCCAATTATGAATAGGTAT 8985 28 100.0 33 ............................ TAACTATTTATTTCTAATGGAATTACGACGGGT 8924 28 100.0 33 ............................ TTAAAACTACGATGGTAAAAGCCCAAAATAATT 8863 28 100.0 33 ............................ TTACAAAGACGACGTTAAGGCCGGTGGCGGCGG 8802 28 100.0 33 ............................ TACTTGAGGCCAAAGCGGCTGTCGCGGAAAAAT 8741 28 100.0 33 ............................ TAGAGGAGATTTATTAAATGACAGAAGTTATTA 8680 28 100.0 33 ............................ TATATAGTGTTGAGAGAGCGATTCTATGACGTT 8619 28 100.0 33 ............................ CATTGGCTCTATTTCTTCAACAAAGTTGTCAAC 8558 28 100.0 33 ............................ TGCTAAAAAAATGCCACTCAAAAATACCGAAAC 8497 28 100.0 33 ............................ TACCAGTACGCAACGTGCTTTTTTTAACAGCTA 8436 28 100.0 33 ............................ TGGATCTGGCAAAAAACACTGCCAGCCGGCTTT 8375 28 100.0 33 ............................ TTAATAATAAAAGCCGCTCCTATGTCCTATTTT 8314 28 100.0 33 ............................ TAAGCAAGAATTAAAGAAAAAAGCTGATCGCTT 8253 28 100.0 33 ............................ CTTTCGTCATTTTCTTTAAGTTCGCCTTTTTTA 8192 28 100.0 33 ............................ TACCCTGAAGTCGATGAGTTAAACGGTGGCTGG 8131 28 100.0 33 ............................ CATTTAACAGTGATACCAAGTTAGATAATGGTA 8070 28 100.0 33 ............................ TAGCAGTCTGGGAACAGCCAAACTAGTCAATGC 8009 28 100.0 33 ............................ TGATGCAGAGCTACTTTGCAACAGAGGGCTGGC 7948 28 100.0 33 ............................ GAAAACGCCGTCAAGACGGTTTTATACGCGTTT 7887 28 100.0 33 ............................ TACTTAACTTTTTTCTTGTTGTCGCGCGTCTCT 7826 28 100.0 33 ............................ CGAAGCGCTCAAAAACACCGCGCCGGCGTGGGT 7765 28 100.0 33 ............................ CCATGTATGACCCAGCCAATATTACTGATCACA 7704 28 100.0 33 ............................ TGAGTGACGACCTTGAAGCAAATTCAGCAATTA 7643 28 100.0 34 ............................ TATAAATATTTGCAAGAATGTTAGTCAAAGGTTC 7581 28 78.6 0 ....................A.CA.ATT | ========== ====== ====== ====== ============================ ================================== ================== 25 28 99.1 33 GTGTTCTCCACGTATGTGGAGGTGATCC # Left flank : AGTAGGAGTAAAATAATCTCTATTGGAGCGATTAAGGAAAACTTAAAAGGTGAAGAAGAACAATTTTATCGCTTGATAAAGATAAATGAGGCTATCCCAGAGAAAATTACTGAATTGACGGGATTAACTTCGAAGGTTTTAAATGAACGAGGTGTTACTTTAGAACAAGCTTTAAATGAATTTCGAAAGTTTGTTGGAAGTGAAATGATAGTTGGATACAATTTGTCATTTGACAATAATTTTTTATTGAAAGCATATTTAAGTATTGGACAAAGGGCTCTTGTAAATTCAATGAAAGATCTCATGGGTATAGTTAAAGAAAAAGATATTTTCCTAGATAATTATGACCTTGAAACTGTTTTAAAAGAATATGGGATAAAAAACGATAATAGACATAATGCATTAAGTGATGCTCGAGCCACTTTTAAATTGGCTAAAGAACTGAATAAAAAAGGTTATTTGCAAATTTAAGGATGTTGATATATCAAGGATCTTTTACT # Right flank : TTTAATATGTCAAGTGAGCAACTAATCTACAGGATTTTGTCCTGTAGATTTTTTAATTTCTGTTTGACAATTAAAAGTTTCGAGAGTAAGATGATTAACAAATAATTAAAAGATTTTGAAAAGCAGAGTAATCAATAAGATTTTATTACAGAGAATTGCTGTTAGATGAGAATCATATAAATGAACTTGATGAACATGGGCTTGGATATCGGTGTTAGCGATATTTAGCTAACAACGGCGTTGTGAACCGTTATACGTCACAAACTATTATTGTAGTTAATGAGATCTGCTGTGTGAACAGTAGATGAAGTAAAGGTGGTAACACGAAGCACTCGTCCTTTGGGATGAGTGCTTTTTTGCTTTTATTAAAAAATGAGAAGGAAGTGGGTAGAATGAGTTTAATTGAAGATGCTAAATCAGGAATTGTTTTAGATGGTGCAATGTCTGATGAATTGGAAAAACAAGGAGTTGAAACTGACAATAAGCTATGGACGGCAACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 19240-18481 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFJ010000012.1 Lactobacillus amylovorus strain Bifido-178-WT-3C Contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19239 28 100.0 33 ............................ TTTAAGGACGCTTACGTTTTACTTTTTACCGCG 19178 28 100.0 33 ............................ CCATACGCAAGACCAATCACTCTCGGACAATAC 19117 28 100.0 33 ............................ TTTTCTCTAACTCTTCGTATGATGAAGCTACTT 19056 28 100.0 33 ............................ TGTAATGTTTGAAAATGGTCAAATTTTCATCGG 18995 28 100.0 33 ............................ TAACGATGACGTAGACAACTTTGTTAAAAAGTT 18934 28 100.0 33 ............................ TAAATATATCTTAAATTGCTAGACCGACCCATT 18873 28 100.0 33 ............................ AAATTTAAGCGCTGGTTATCAAATTAGAATTAT 18812 28 100.0 33 ............................ CTGGCTATGTTAAATATCCAGCAGATGAAACTA 18751 28 100.0 33 ............................ TAGACTAAACATTTTGGGATTACTGCCCCAGCA 18690 28 100.0 33 ............................ TGAAGGAATACCTAGACATAGTTGGATATGCTC 18629 28 96.4 33 ........................T... TAACCTGTGTCCGTGATTTTCATTTTATTTTTG 18568 28 96.4 33 ..........................T. CTATTCAATTATCAAGCACAACTAGTTGCTAAA 18507 27 71.4 0 ..........TAA.T...A....-..TA | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.2 33 GTGTTCTCCACGTAAGTGGAGGTGATCC # Left flank : GATCAAAAGAAGTTTGATGAACTAGGCGAAAAGCTGTTTATGAAGGGTGTTTTGCAAAACTTTGAGCAAAAGCATGGTCCAATTAAAGGCAGAATGATGGTTACCGAAGGTAAAATTCCACCTGAGATGCTTGTTAAGTTGCAACCAGAACTGATGAAAAATCCAAAATTTATTGTAGTTGAAGGTAGCTTTGACTTTTCAAACTATATGATCGGAATGGTTATTGGCCTTAACCCTGTTCGTCCACTAGCTAATGGCTGGTTGATTCCACAATTGAACCATCCTGGTATTAAGCCTACTAAGAATTGGCAAGAATTCTTTATGGAAAAAGTTATGGAGAAAACTGATGATAATGGAAAGATCGATTTGCCACTTTATAGTTGGATTTCTGATAAGAGTGATTTAACTTTGAGCGATAAGGAAAAATAATTTGTGCTTAAAGTGAATAAAAATCTAGTTTTTGTTTTTAAAGAATGGCTTTGTTATAGGGATCTTTTAGT # Right flank : TTTTAAAATTTAAAAATCTTAATAGAGGGAAAAATAATGAAAAAATTATCTAGGTATGCAAAAAATCTTTGGGGTAAGAAGGCCACTCAAGATGAAACTGAATTATGGTTACCTTTAATTGCACATATGATAGATACTAAGAATGTAATTAATTGGCTTTATAATCATTGGTTGAATCAAGGACAACGTAATCTATTTCTGCAAAACATGTCAGATATAGATGTACAAAAATTAGTTAGATTTTTAGGCTATATTCATGATATTGGTAAAGCAACACCAGCTTTTCAGACGAAGGAATCTTATAATCATGATCGTGATTTAGACTATGATTTGCTTGAGCATCTATTAAGAAATGGTTTTACTAATTTAGATCAATTGCATTTGGCTAATGCTCGTAGAACACCACATGCATTGGCTGGTGAAGCTATTCTTGAAAGAGAAGGACTAAATACTTCTGTAGGAGCAATTATTGGTGGTCATCACGGAAAACCTCAGAATGA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGTAAGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //