Array 1 722748-728579 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018724.1 Sulfurivermis fontis strain JG42 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 722748 29 100.0 32 ............................. GCCCACGGGCCGCTCGCCTTGCTCCATCCGCT 722809 29 100.0 32 ............................. GCCGTGACCGCGCCCAAGGGCACGTTCGAGCA 722870 29 96.6 32 ............................A GTTGAATTCCAGCTTTTGTCGTTTGAACAACT 722931 29 100.0 33 ............................. GTTAGCGGCCCGCCTGAATACTGCTACCCGGCG 722993 29 100.0 33 ............................. TACAGCGACTTCTTCGCTGCCACCCAACTCCAG 723055 29 100.0 32 ............................. CCACTGATCGCAGTTGCGCCCAGCTAGTAACC 723116 29 100.0 32 ............................. TTCGGCACCGGCTTCGTCCGCCTTGGCTCGGC 723177 29 100.0 32 ............................. TCGGCTCTTTCTGGGTTGCCTGTTGATATGCT 723238 29 100.0 32 ............................. CCGCTCCGCCTCTATCAATTCGTTTTCGGTAT 723299 29 100.0 32 ............................. GCAGCCAGCTCGGGAAACTGGCGGCGGTTGTG 723360 29 100.0 33 ............................. GCGCTCTCGCGCCACATCGGCCAGGGCAACGGC 723422 29 100.0 32 ............................. CTCTACGAGATCACCGTGCCAGCAGGCGACAC 723483 29 100.0 32 ............................. GACGTGGACGTATCCAGCCCGAGCGCGGGAGA 723544 29 100.0 32 ............................. TGGGTGGTCGAGGGCTTCGTGATGGTCAAGAG 723605 29 100.0 32 ............................. GTTGCTGCGTGGTCGCGGCCGTGGTTGTTGTT 723666 29 100.0 32 ............................. ATGAACCTGGCCCGCCCGATGTTTCAGCTCAA 723727 29 100.0 32 ............................. GCGTCGGCCTCGATGCAGGGGGACAGGTAGCG 723788 29 100.0 32 ............................. TTCGAGGGAGACGGCCTGGCCTGGCTGAACGA 723849 29 100.0 32 ............................. GACGGCCTGCCGGCGGAGGCGCTGGAGGCGAC 723910 29 100.0 32 ............................. GCGATCCTGGAGGAGGCGAAGTGATGACGAAG 723971 29 100.0 32 ............................. GAGTCCGGCAAAGTCCGATTTCCCATCCAAGC 724032 29 100.0 32 ............................. ACCGGGAACGATTACGACATGACGCGGCTGCT 724093 29 100.0 32 ............................. CCATGCCTTTTATGTATCCAGTTTGGACGCTG 724154 29 100.0 32 ............................. CCACGATGCGAGATCACAAATTGGCTGATACG 724215 29 100.0 32 ............................. GCCGCCTACGTCCTGAAGACCAAGGGCTGCCC 724276 29 100.0 32 ............................. TCGTCCACGCTGTCGCCGACCACCTGGCCGGA 724337 29 100.0 33 ............................. TTCAACAATCTCGACAACTTCGGCGGGTTCCCG 724399 29 100.0 32 ............................. TAACCCAACCAACACCCAACGCCATAACCACC 724460 29 100.0 32 ............................. ATTGTTGGGCTAACATCGATCCAGATGCCAGC 724521 29 100.0 32 ............................. ATCATCGCCGCCCTGACGGCGAACCGCGATGA 724582 29 100.0 32 ............................. CTGTGATCATCGGCTACGAGGAGCTCTATTCG 724643 29 100.0 32 ............................. TGTTGTTGGAAGTGGCGAACTCGACTGTGGAC 724704 29 100.0 32 ............................. CCCCCGGCCCACTTCAACTGCCGGTCGGTCAT 724765 29 100.0 32 ............................. ACATGGTGGGCGAGATTCCTTCCATCCTCAAC 724826 29 100.0 32 ............................. ACAGGTCAAGGCGAACTTGCCGTCGGCAGCGC 724887 29 100.0 32 ............................. GTCGATGACCGCGTGGCCTGGCTCGGGCGGAG 724948 29 100.0 32 ............................. CCCTCCGTGGAGGTCCAGGCGTGGCCGGTGGT 725009 29 100.0 32 ............................. CGGTCCCTCAGCGCCTTGCCCAACAGGACCGC 725070 29 100.0 32 ............................. CTTGCCGCAGTTGGCAAAGCCGCCGCGATTAC 725131 29 100.0 32 ............................. CTTATGTCGATTTGGCCGACCGCGCCAATGGG 725192 29 100.0 32 ............................. CTGCGTAATCGACAGTTCTTCGCCGACCTTCG 725253 29 100.0 32 ............................. TGATGATCTCATCCTTGAACTTCCCGCCGATG 725314 29 100.0 32 ............................. TCCAGGTCATACGGGAGGTTGGCCCCCACGAT 725375 29 100.0 32 ............................. CCGCATCAACGTCGTGTAGTTGCCATCTCCCA 725436 29 100.0 32 ............................. GACCTCCCATGCAACCTTCAGGCCATCTTCCA 725497 29 100.0 32 ............................. GCCCGGCTCCAGGACGCGGATGCGGCGCTTGC 725558 29 100.0 32 ............................. CCCCCGGCCCACTTCAACTGCCGGTCGGTCAT 725619 29 100.0 32 ............................. ACATGGTGGGCGAGATTCCTTCCATCCTCAAC 725680 29 100.0 32 ............................. CTATTTCGGTCATTTCCCGAACAGCATTAAAA 725741 29 100.0 32 ............................. CGACCCAACCGCGCGCGAACTGTTCCAACAAT 725802 29 100.0 32 ............................. GTACGACGCCGCTTGTTCCCAATCGTAACAAA 725863 29 100.0 32 ............................. GCCGACGAATCACAATGGCTGGAACCGTCGCA 725924 29 100.0 33 ............................. CCGGTTGCCTTGTGCGTCGGTCGGCTTGTAAAC 725986 29 100.0 32 ............................. ATGCCGTCCGCATAGGCGTTCTTGCGCGTCCC 726047 29 100.0 32 ............................. CCTTCCGGGGTGACGTGCGGGCTCGAACCCTG 726108 29 100.0 32 ............................. CTACGGTCAATCTTCCACCGCTTCGGGATCAC 726169 29 100.0 32 ............................. AGCACGGCACCCCTTCAGCTCCGGGTGCGACC 726230 29 100.0 32 ............................. ACCCTCAGTGTGTCCTTGTCCAACGTGGGCGG 726291 29 100.0 32 ............................. CACGTCCGCATCCTGGAGCATTACACGGAGCA 726352 29 100.0 33 ............................. TGGTCCGCCTCCTGACCTTCTGGGAGTCGGACC 726414 29 100.0 32 ............................. GTCGGAGCCGTCCTGGTTCGGCCCAACAACAG 726475 29 100.0 32 ............................. GCTATGCCCTGCGGCAGATCGAACGCGCCCAC 726536 29 100.0 32 ............................. TCCGTGACCGCGCCCAAGGGCAACTTCGAGAA 726597 29 100.0 32 ............................. GAGGAGTGGGCCGTGGTCGATGAGTGGGCGAC 726658 29 100.0 32 ............................. AACGACATCAGCCGCAAGGCCCTGATCCAGGC 726719 29 100.0 32 ............................. TGGTCGAGCTGCCCAGCGGTGCCGAAGTCCCG 726780 29 100.0 32 ............................. GGACAGCATGGCCGTCCGGGGAGCGCCCCGTG 726841 29 100.0 33 ............................. CTGATGGGGCCACCGTTGCCGCCGGTCGCCACC 726903 29 100.0 32 ............................. TTCGCCCTGCGCATGCTGTCGGAGCCGCAGGA 726964 29 100.0 32 ............................. GAGCGGTCAACCTTCCACCGCTTGGGAATGAG 727025 29 100.0 32 ............................. CTGGCGTGAGCCGGATCGTCTGTCCAGCCCTC 727086 29 100.0 32 ............................. GCTACGCCCTCCGCCAGATCGAACGCGCCCAC 727147 29 100.0 32 ............................. TCCAGGCGCGCAGCGAGTCGTGGGCGGCGCGT 727208 29 100.0 33 ............................. CATTGCCTGCTTCGAGCCCTCGCGACAAGCAAC 727270 29 100.0 32 ............................. TATAGCCGGTCAATCGGAAGAAGTAAAGAGGC 727331 29 100.0 32 ............................. TGACGGCGCTCATGACCCCGGGGCCAGCGACC 727392 29 100.0 32 ............................. GAGGTGCTGTCATGACCCCGCTGGCTAGGATA 727453 29 100.0 32 ............................. GGCGAGACGGCCCTGCTGCGAATCAATCCCCA 727514 29 100.0 32 ............................. GCGCATTGCTCCTCCTCAGTGACGCGAGTGCG 727575 29 100.0 32 ............................. GCGCATTGCTCCTCCTCAGTGACGCGAGTGCG 727636 29 100.0 32 ............................. TCGCTATCGTCGCGCGGAAGCACCGGCAGCGT 727697 29 100.0 32 ............................. GCACCACTGGCTTCTTGCGCACCAGCTTCTCA 727758 29 100.0 32 ............................. CCGCACCATGCAGAACTTCCTGATGGACACCA 727819 29 100.0 32 ............................. GCGGAGAAAAGCCTTCAGGCTCTTGGTGGCCG 727880 29 100.0 32 ............................. TAGTCCCCTGCTTCCTCCGGCGGCTCCCCTGA 727941 29 100.0 32 ............................. CCCAACACCTCGTCGACGCGCTCGCAGGAATC 728002 29 100.0 32 ............................. GTTCACGGCCGTGGCCGGCCGCCCGGGTTTCT 728063 29 100.0 32 ............................. CGCGACGACGCGGTGGTGCATATCGACGTTAT 728124 29 100.0 32 ............................. GAAGCCAAGGCGCAGCGCGCCGAGGTACAGAT 728185 29 100.0 32 ............................. GAAACCATCCGCGCCCTGCCCGACGAGGCCAA 728246 29 100.0 32 ............................. ATCAACGAGCAGGTAGCCGTCTGTATCGGTGC 728307 29 100.0 32 ............................. CTAGCCCGGTACCGTGACATCGTGACCAAGGA 728368 29 100.0 32 ............................. GTTTCGCCGTCCATTTCGACGAAGCTTCGCAC 728429 29 100.0 32 ............................. GGATGCCCGATCTGGCGATGTTGCGCCGCGCG 728490 29 100.0 32 ............................. TCTGGCGGCGACGCCTACCTCTCCCGCGCCCT 728551 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 96 29 100.0 32 GTGTTCCCCGCGCACGCGGGGATGAACCG # Left flank : TGATCGAAGACATTCTGGCCGCAGGCGAGCTGGAGCCGCCCAGGCAACCGGCTGAGTCTATCGGGCCGGCATTTTCAGATGGCGAGAACCTGGGCGATGCTGGTCATCGTTACTGAGAACGTTCCACCTCGCCTGCGAGGCCGCCTTGCGGTATGGCTTGTTGAGGTGCGTGCCGGCGTGTACGTGGGAAATCCCTCCAAGCGCCTGCGCGAATTGATCTGGGAACAGGTCAGGGACGGTGTTGAAGCGGGAAATGCCGTCATGGCCTGGACCACCAACACAGAGTCTGGCTACGACTTCGAAACCATAGGCGCCAACCGGCGCATACCGGTCGATTTCGATGGACTGAGACTCGTATCCTTCCTGCCGTCAGACTCCAAGGCGGACGCTCCTTAACAATTCGGAAATGGGTTGCCCCTGGCGCGTGGCTATAGGGGCAACCTGCTGGTAAAATCCGCCAGGCACAAAATTGTCCGGTGGATCAATTTGTTACATTAAGT # Right flank : GATTAAAGAAGACTTGTATGTCAACCGCCTTAAGGAACTTCTGCAAAAGTCCCCGATCTGATCTTGCAACCGCATGACCGGAGCCGAGGACGGGGAAAATGAAACAACTGAGCATGACCACGGGGTTCGAGAAATACACCAAGGCGACCAAGCGCCAGGCGTTTCTGTCCGACATGGACCGCCTGCTGCCGTGGGCGGAGCTGTGCGCGCTGATAGCGCCGCACTACCCGCAGGCCGGTAACGGCCGGCCGCCGAAGGAGCTGGAGATGATGCTGCGCATCCACTTCCTCCAGCAGTGGTTCAATCTCTCGGACCCGATGGCCGAGGAAGCCCTGTACGACTCGCTCAGCATGCGCGCCTTCGCCGGCATCGACCTGGGCGAGCATCCGGTGCCGGACGAAACCACGATCTGCCGCTTCCGCCACCTGCTGGAGCAGCATGGCCTGGGTCGCAAGCTGTTCCAGCAGATGCACCAGTACCTGCAACGCCATGGCTTCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 729774-731367 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018724.1 Sulfurivermis fontis strain JG42 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================================ ================== 729774 29 100.0 33 ............................. CACCAGACCGGCAATGGCCCGTGCTATTGCCAG 729836 29 96.6 32 ................T............ CCCACCGCCGAGGTCCGCGACCTGCGGGCGGA 729897 29 96.6 32 A............................ GTAGCATGACCTCCACGGCGGCGCGCAACGGC 729958 29 96.6 32 A............................ GCGTTGTTCGGGCTCGTGATTTTTATCGCAAA 730019 29 96.6 192 A............................ AAAACGAAAGAGGCGCCCAACAGCGCCCTGACCTTCGACCGCCTGGCCGGCAGCCTGGGCAAGGGCAACTACCGCAAGGACGGCCGCCTGAACGCCAAAGGCGCCGACCGTGTCGCCGGCAAGACCCCTGATCGGCGAGACCAAGCAGCTCTCCACCAAGATATTCCCCCGCGCCACCGCCCACAGTGTCGA 730240 28 82.8 126 .................-..C....GT.A GAAATGGTGATGTCAAGACCTGACCCCGAATATTCTTCCGACCGTGTCGCCGGCAAGACCCCTGATCGGCGAGACCAAGCAGCTCTCCACCAAGATATTCCCCCGCGCCACCGCCCACAGTGTCGA 730394 28 82.8 125 .................-..C....GT.A GAAATGGTGATGTCAAGACCTGACCCCGAATATTCTTTACGGCATGAGTCAGAAATGGTGATGTCAAGACCTGACCCCGAATATTCTGAACCGCCAGCCACGGCAGCAGGACTTCGGGGCAGGTG 730547 29 96.6 32 A............................ AACGCCGCCGCCAATCGCTTATGGGATGCGTA 730608 29 100.0 32 ............................. CGATCTGCGCCTCGGCGCCGGACAGCGTGACC 730669 29 100.0 32 ............................. CTGGCCAGCAGCGGCAGTCCGTCGATCTCGGC 730730 29 100.0 32 ............................. TCCCAGATGCTGAATTCATTGATGCCAGCAAT 730791 29 100.0 32 ............................. GCCGACGCCGGGCACCAGAAGCAGGCGCAGCG 730852 29 100.0 32 ............................. CGATTGGCGGCGGCGTTCTTGGCGCCCTCGCT 730913 29 100.0 32 ............................. ATGATGCGCCGAATGACCGCCGATTGCCTGCC 730974 29 100.0 32 ............................. CCAGCGGCGGAACTCGGTGTCAGGGATTGGAT 731035 29 100.0 32 ............................. TTGACCGGCGAATTCTCCGGAGTGCGCAGCAC 731096 29 100.0 32 ............................. CAGCTTGAGAACAGCGCCACACCGTAGGGATT 731157 29 100.0 32 ............................. AAATCAAGGCGGGGGCGTAACCATGGCTGGAT 731218 29 100.0 32 ............................. CCACCGATGTGGCCGCCTCGCTGGGGCTCGAC 731279 29 96.6 32 A............................ TCCATGACGAGGACCTGGGCGCAGTCTCCTTC 731340 28 82.8 0 .................-..C....GT.A | ========== ====== ====== ====== ============================= ================================================================================================================================================================================================ ================== 21 29 96.6 49 GTGTTCCCCGCGCACGCGGGGATGAACCG # Left flank : CACGACTCCCACTGCCTGCCCGACCTGCTGCACGGCGATGAAACCCGCGTCTGGGGGGATTCGGCCTATCAGGGCCAGACCGAGGTCATCAAACAGCATGCGCCCAGGGCCCGCGACCTCACCCACCGACGCTACCGCTACAAGGGCTGGGTCGACGAAGCCGAACGGGCGAAGAACCGCCTCAAGTCCACCATCCGGGCACGGGTCGAACACAGCATCGGTGTCATCAAACGGATATTCGGTTTTGCCAAGACCCGCTACCGGGGATTGGAGAAGAATGCCAACCGCCTGTTTGTCACCTGTGCCCTGGCCAACATCTACCTGGTGCGCAGGCAGCTGCTGCGTACTTTGCAGGCGTAGTGCCGATGCACTACGCCAAATGCGGCTCACGGGCCGCCGGGATGAGCAAATACCGGCGCTGCCGGTGCGATTCGGCGCGTGATGACTCGCTGATATCGACGATTTGCTCATATTGGATTACTTGTTCAGAGCATCCTTAA # Right flank : AGAAATGGTGATGTCAAGACCTGACCCCGAATATGTGCGAATATGATGTCAAGACCTGACCCCGAATATGCGAATATGCTGTTCTTTAATAATTTGGTAAGCTGCATATCCATGAGTGCGGGAGCAATCTCATCTTCTGGGGCATGGTTCGCGCATTCATGGTTTTATCCGTATTTACAGCGCAATGTTGCGAGTACGGTGCATCACCCGCTCACCAGAGCGGGTGCGGATTGAAACCCGGACTGACCACTTGTTGTCGACGCACAGGAAGGGCATCACCCGCTCACCAGAGCGGGTGCGGATTGAAACAGCAAGGAGCAGATCAAGCAGCTCAAGGATGAGCGCATCACCCGCTCACCAGAGCGGGTGCGGATTGAAACGAGCTGGAGGCCACCGATGTGTGGGGCGGCAGCACGCATCACCCGCTCACCAGAGCGGGTGCGGATTGAAACATCGTGCCGACCGCCGAAGCGGTGGTGGGTCGTCGCATCACCCGCTCA # Questionable array : NO Score: 4.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-1.56, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 731567-731961 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018724.1 Sulfurivermis fontis strain JG42 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 731567 37 100.0 35 ..................................... CCGGACTGACCACTTGTTGTCGACGCACAGGAAGG 731639 37 100.0 34 ..................................... AGCAAGGAGCAGATCAAGCAGCTCAAGGATGAGC 731710 37 100.0 35 ..................................... GAGCTGGAGGCCACCGATGTGTGGGGCGGCAGCAC 731782 37 100.0 34 ..................................... ATCGTGCCGACCGCCGAAGCGGTGGTGGGTCGTC 731853 37 100.0 35 ..................................... TCGATCACGGCCTTGACGTCCTTCAGGGCCGTTTC 731925 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 6 37 100.0 37 GCATCACCCGCTCACCAGAGCGGGTGCGGATTGAAAC # Left flank : ACCGGCGAATTCTCCGGAGTGCGCAGCACGTGTTCCCCGCGCACGCGGGGATGAACCGCAGCTTGAGAACAGCGCCACACCGTAGGGATTGTGTTCCCCGCGCACGCGGGGATGAACCGAAATCAAGGCGGGGGCGTAACCATGGCTGGATGTGTTCCCCGCGCACGCGGGGATGAACCGCCACCGATGTGGCCGCCTCGCTGGGGCTCGACATGTTCCCCGCGCACGCGGGGATGAACCGTCCATGACGAGGACCTGGGCGCAGTCTCCTTCGTGTTCCCCGCGCACGCGGCATGAGTCAGAAATGGTGATGTCAAGACCTGACCCCGAATATGTGCGAATATGATGTCAAGACCTGACCCCGAATATGCGAATATGCTGTTCTTTAATAATTTGGTAAGCTGCATATCCATGAGTGCGGGAGCAATCTCATCTTCTGGGGCATGGTTCGCGCATTCATGGTTTTATCCGTATTTACAGCGCAATGTTGCGAGTACGGT # Right flank : CCGCGAACCGTCAAGCAGTTCAGATCGTTACGCCATCTGGCCCTCGATAGTACGCAATATCGTTGCAGCGAGCGTTTCTCCGGTACCGATGATATTGGTTATCTCTTTGGTTTTGAGACCGACGGCGTCCCGAATATTGATTCTCACCGCTTACGAGTTGTCTTCAGCAATGTATCTATGACTTCCTTGAGCACTTCGCGGTAGGCCTTGGGTAAGGCTTGCCATGCGGCGGCTAGATTTTGGGCGTCCTTGGGGAGGGTGTGATAGGTGGTATCACTATCTTCTCGTACGGCTCCGTGGGCCTGGTCCAGCCAGCCGTGCGGTTTTTTTAGCCTCTGCTCGATAGTTCTTGCCGTGGTCGAGCCGATGTTGCGCATTTGATTTTTGTTGCTGAAGTAGCGGGAGATGTAGCTGGGATCTTTGCCGATGAAACGGGAAAACTCGGCCAGATTACCGTTGAATTCTTCGTCGATGATGCGGCGCAGGTTATGCCGGCGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCATCACCCGCTCACCAGAGCGGGTGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.30,-15.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 4 1344819-1344983 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP018724.1 Sulfurivermis fontis strain JG42 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================= ================== 1344819 28 100.0 40 ............................ CGAGATGTCAATATGGACATCGCTGACGATTGGTCTCAAT 1344887 28 100.0 41 ............................ GATTGGCAGCACCTATGACGATTATACTGAATGGTCTCAAT 1344956 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================= ================== 3 28 100.0 41 CCCCTTATCAAAGTCGGGGCGGTGAAAC # Left flank : GCGAGTTGTGCGATGTAAAGCCGCATGTGCTGCGTTATTGGGAGCAGGAGTTCCCACAGCTCAAGCCGGTCAAGCGTCGTGGCAACCGACGTTATTACCAGCGTCACGATGTCATCATGATTCGGCAGATCCGCAGCCTGCTCTATGAGCAGGGTTTTACCATCGGCGGTGCGCGCCAGCGTCTGGAACAGGAAGCGACACCGCCACAGGGGCCGGTCGACTCGCAGCTTCTGCATGCCTTACGCGAAGAACTGGAAGAAATTCTGGCGATCCTCAAGCGCTGACCGTTCCTATCCATGGCGCACTGGTGTATGATTTGCGCCTTCCGCACGGCGGACCCTCACAAGAAGTTTCAGCAGTACCCAATCGGGGCGTAGCGCAGCCTGGTAGCGCACTTGCATGGGGTGCAAGTGGTCGGAGGTTCAAATCCTCTCGCCCCGACCAATTAATCAATAAGTTAGCGCTGTTTCCACAAATGCCGATTTCTAAAACCTGGCATC # Right flank : CTGTACCCTCTGGATGTCGCCTGGCGCAAGGGCTGCGGAGTGCGTTTGCGGACAAGATGGCGCGGGTGGTGAAAATTATCCCGTCGACACACGCGCCGACCGTGGGTAAGTTCAATTTTTCTTTTGTTTTCAGTGTGCGGGCAAACATTTCTGGAATGCGCCTCAGCATTAGGCTCCAACTGTAGGCATTGCTGTGATATCTCATGGCTGCCGGTGTGCTCGGTGTGGCGGATAACGGTCGTACAGGCAGCTCGCCCGCAGGATTGCGTCAAAGAAATCGATCCCCTCATCCCAGCCTTCTCCCTGGGGGAGAAGGTGCAATGCGTTGGCCGTTCATGAGAGCAGGAACTTGTGCAGACCGCCGGGCAAAGCTTCGAGCTGGGGGCCCGCCAGGATCTGAAGACCGCTCGCTTCCGCACGCCGACGGTTGCCCTGCTTGATATCGTGCAGGCTGAGCAGCAGGCCGCGGGCCTTGATGCCACCGGTGGCGCGGGTCAGGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCTTATCAAAGTCGGGGCGGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //