Array 1 1-845 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRS01000105.1 Leptospira alstonii strain 56661 Contig105, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================================================== ================== 1 29 100.0 32 ............................. GCGGAGGACAACAAAAGACTTATTGATGAAAA 62 29 100.0 33 ............................. AAAAGAAGTGGCTACGAGATTCCGAGGATACTC 124 29 100.0 32 ............................. GACGAATGGGTCGCGCAAGCGCTCGATCTTGC 185 29 100.0 32 ............................. TGTGGATCAAGTTGGATCGTGAGTGAAATTTG 246 29 100.0 32 ............................. CTTCGATTTGTAGAATTGCCTTGCGTAAAGAT 307 29 100.0 32 ............................. ATGGAATGTGCGTTCAGCCCGCTTTCTCTGAG 368 29 100.0 32 ............................. AAAAGGCCGTGTCGAGCTCATCGAGCTCTTGA 429 29 100.0 32 ............................. GAATGTTGTTCTCATCTTTTATTTTGAGACTC 490 29 100.0 32 ............................. AGAATCGCTAAACGATTTGGCGTCCTTTGCCG 551 29 100.0 32 ............................. GAATCTGGAATCGCAGATTAAACTAAAGAAAA 612 29 100.0 32 ............................. GAAATCCGAACGATGTCGTTTTTCCTCCTCCA 673 29 89.7 115 ........................G.TG. GAAACAGAATGGATTTTGATTTAAAATTCTATCCACTGATCCCTAACAACTATCCACTTGAAACACATGCGTGGGGTTGAACCGAATATCGTGAGGAAATAGAGGCGCTATTAAC 817 29 89.7 0 ........................G.TG. | ========== ====== ====== ====== ============================= =================================================================================================================== ================== 13 29 98.4 39 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : | # Right flank : GGAAACAGAATGGATTGTGATTTAAAATTCTATCCACTGATCCCTAACAACTATCCACTTGAAACGGGTTGGAACCGCAATTGAGAACGTTATGTGCTTTTGCCACGCCCTTTTACCCAAGAAGAACTTGTCTTAAAAACTTGCCGGATATTTTTTGAGGTCTTGGAACATGCTCAAATTGGAATAGGAACGATCAAAAACAGAAATTCCCGTGACAGTTCCACGACATACAAAACGTATGATCAATAAAATTAGTATATTCTATTTTTATTAACTAATGATCCAAACAAAACCGCTTTTGATTGCCCGTAAATCCTAAGCGAAAACACCCATGATTGCAATCGAGAACCGCAACATTTCGTCCGGCTAAAGAGAATATAAGAGAAAATGAATGAATCGAAAAGAAATAAAATCCAAAGAAGAATTCGAGCTTTTTATCGTAAGAACGTTGGATGATTATCGAAAAAACAAGAAATCGCGGACTTAAATCCTGAAATTGC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.60, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 578-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRS01000163.1 Leptospira alstonii strain 56661 Contig163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 577 29 100.0 32 ............................. ACGATTCGTAATAATACAATCGGACAAACCGT 516 29 100.0 32 ............................. TCATAGTCTTTCTTTTGTAATTCATAGTTCAT 455 29 100.0 32 ............................. AAAAACCGAACGAACCAAAACCACCCGACGAT 394 29 100.0 32 ............................. CCGCTCAACGAGTGGGCGAAATCCAGACTCGT 333 29 100.0 32 ............................. GATTAGGATATACTAATTTAAGAGTAACTTTG 272 29 100.0 31 ............................. CAATCCCAAAAAGGCTCTGTGGACCGAAAAA 212 29 100.0 32 ............................. GGTTTGGCCTTGCGCTCATTGCGGGAGATACC 151 29 100.0 32 ............................. AATGATAAATTTGACTCCGATTATGGGATTCC 90 29 100.0 32 ............................. TTCGTATCCGTCGTTTTCGAGTGCAATTTGTG 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : CATGTAGGGATACATTCAAACAACGTAAACTACTCAAAAGAATTATCCCGGACATTAAGGAGCTGATTTATGGTGGTATTGATTTTGGAGAGGGTGAAGACCTCTCAGAGGGGAGAGATATCGCGGTTAGCCATTGAACTGAAACCGGGCGTTTTTGTCGCGTCCGTTAACGCCAGAGTTAGAGATCAGCTTTGGAAAAAAATTTCCGAAGAATGGAAATCGGATGCGATCCTTTTGTATTCGAGCAACACGGAACAGGGTTACGGTATCCGTTCCCACGGCGATCCTTCCCGCGAGATCATGGACTTTGACGGTTTACTTTTAATGTCCAAACCCGATCCCAAACGAGAACAAAACGTCGCTTCGGACGATGAGGACTCCCCTTTTGCGGGTCTTTTAGATTTTGTGAATGAAAAAGCAAAGTCCTTACTTTTCGAAACCGATCCGAAAGAGCCTCCTGAATAAAAGTGTTGGGTAGGATTCCTATACAAGTTTTTAGC # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19154-18515 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRS01000023.1 Leptospira alstonii strain 56661 Contig023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 19153 29 100.0 32 ............................. GACTTCTCGGTTCCTCGCGCGGAAGGAATCGC 19092 29 100.0 32 ............................. CGGCAAACAATTGACCAAGTATTATCGTCTTC 19031 29 100.0 32 ............................. TTTTCCAAAATGGATTGAAGCGGAGAAGCCGC 18970 29 100.0 32 ............................. TCTCGATTTTCGGTTGCAAGATCGAGACTTAA 18909 29 100.0 32 ............................. GGGCCTATTTTTAGGAAAACCAATGGTGAGCA 18848 29 100.0 32 ............................. TAACAGACGACGCTTCCCCCTTCCCTTTCTTC 18787 29 100.0 32 ............................. AGCCCCGATCGCCAAGTGTTTGGTGCTCGATA 18726 29 100.0 32 ............................. CGGATGATACCGACGAGGGCGATAAGGAAAAA 18665 29 100.0 32 ............................. TTTCAAGACCGCTGCTTTAGACCACTCAGCCA 18604 29 100.0 32 ............................. AAAAATCAAAAATGAAATATTAGAAAATTCTA 18543 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 CCATCCAACCCCACGTGTGTGGGGAATAG # Left flank : GATACGAACGTGATCAACGCCGCCAAGGAAGGAATTTATAGAGAGGATCGTCTTTTACCCGTGGACGATAAACTCAAAAATAAATATTTTACCAAACATCGGGACCCGGAAAGGGGAGAATTATCGTATCAAGCCAAACAACAACTCAAGGACCTGATCGATTTTAGAAAGGCCAATCTTTTGGAAACTCCGTATCCGATTCCGGAAAAGATGGACTGCGTGTTTTGCAGGAACGTAATCATCTACTTCGACAAACCGACTCAGAAAAAAATATTCGAAAATTTTGAAACCGTTTTGAAGGACCGGGGACTTCTCGTGATCGGTCACTCGGAAACCTTGTTCGGAATTTCGGATAGTTATAAGTTTTTGGGACACACGATCTATCAAAAAAAACCGGTTGTATAGAACGCGATCCATAACGTTACCCACGTGTGTGTTTCAAGTGGATAGTTGTTTAAGGATCAGTGGATAGGACTTTAAATTAAAATCCATCCTGTTTC # Right flank : GCTAAAGACTTGTGTAGGGAAATTGAATGTTATGTCTAGAAAATACTGTCGTTTTGATCAATTTCCCCTAGTAATGATTTTGCTTTTTCGCTAAAAAAATCTTCGAGGTTTTAGGGAGGGAGGCGCCGTTATCCGGTTCCGAATCAAAACGCAATCCACTTTTCCGGTCCAAACAAGGAGATATCGACTGTCGGAAATTCTTGAGGCTATTCTTGAAATTCTCTTTCTGTTTCCCTTCTTTTCGTCTTCCGGATATCGAGACTGAAATCGACAGGTTCGGATTTTACGGAATGAAATAATTATAAAAATAGAATATATGAATTTTATAATTTAGTAGATTCTGCTATATTTATGGGTTTAAAGATTTTTAGCAATTGAATCTTTATCATTGGATTTAAAAGTAGAATGGGATTGAATAAGATCCGTTGCGAATTTTTTAAGTTATAGATTGCCGCTCAAGTCATCGTTTCTGTGAGTGGTTTCACAAATGATCTCGATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCATCCAACCCCACGTGTGTGGGGAATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 22698-23739 **** Predicted by CRISPRDetect 2.4 *** >NZ_JQRS01000031.1 Leptospira alstonii strain 56661 Contig031, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 22698 36 100.0 36 .................................... ATCATTCGATGGCCCTCCCGCCAAGACCTCTAAGGG 22770 36 100.0 35 .................................... ATCGATTCCCCTCCGTCCATCCAAACAAGAAGAGA 22841 36 100.0 36 .................................... AATATTTTTGTTGGTCGCCATTTCCATGTATCACCT 22913 36 100.0 37 .................................... GAGGTAAAGAAAATGCCGGATAGTTCTCTAAGCACAA 22986 36 100.0 38 .................................... ATTATTTAATTCTAAAAAATTTCTTAAAATCGAAACCA 23060 36 100.0 36 .................................... GGAACAGAATTTCCGGAACTCACTCGCGATCAGGTT 23132 36 94.4 34 ....G..........G.................... AAGGAGCTCTGAATCCGCGAAAAAGTTTTGCCGC 23202 36 100.0 37 .................................... CGAAGATCATGGAGGTTGTGGATCGAAGAAAGAAGAG 23275 36 100.0 36 .................................... GGCTTATCAGTTCTGTCGCCACTGATGGAGTATCGA 23347 36 100.0 36 .................................... TAGCGAGAAATCGCTTCGAAGCCGCCGGTCTTGGAT 23419 36 100.0 36 .................................... CTGCCCGAAAGTTTGGTAAAGGGGCTGAAGGCAATC 23491 36 100.0 36 .................................... CGAACGTTTCTTCGACGTCTGGGAATCGAAATAAGA 23563 36 100.0 35 .................................... AAATTCACGGGGAAGAAGTTCTCTACGGGGAAGAA 23634 36 100.0 34 .................................... CAAATAGGAGAATGAAATAATGCTTGTGTTAGAG 23704 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 15 36 99.6 36 CTGAACATACCTTTGATGCCGTTAGGCGTTGAGCAC # Left flank : GAAATTGGCAAAAGTCACTGAAAAAGAAGACGATGTTTTCTATCTTACCCTTTGCACCAAATGCGCCTCAGGCGCCCATACCCAAGAGAAAAAATCCGCTTGGCCGGAGGCTCCAAAAACTCTGAAAATTCTATAATTCAAGTATCTCTTCAGGGCATAGACATAATTCTATCTATAAACAAAGCCTTAAATCCTCAATCTAAGTTTAGTTCCGGCATCTATCAACTTTCATTAGGATTTCTGAATCCTCTCGATTCTATGGTTCTCCGCGGCTTTTTTTCTTCCTTGCGATAATTCCGGTTCCTTTTAGGATTGAAAATGTATGGAAACGTACTTGATTCTTTAAATCTTAACGGTAAAGACCGAGAGAATCAAAATTCGATCCGTATCGAAATCCAGAAGATGAAAAAGAGAAATATCCGACTATATGCTTGTTTTCCCTTTACAAATTCCCGTACATCCGCAACCTCTCCTCGTAAAAGCCATAAAAACAAAATGCT # Right flank : CATTAAAGTCGTTAGGGACGAGTAGTTAGGGGTTAGGACTTTACATACAATAAAACGTAAGCGTTCCGACAAAAATGGAGCTTTTTACTTGCAAAAAGTATGATTTTCTAATAGAGAAATGCCACCGGAGTTTTCCCCGCCTCCTATTTCGCGATCCTGAAACGCGATCCATAGAGAGCGTTTCACTGAGTAGAGAGAATGATCCCTTGAAATAGGTGCCTCATTCTCTATGGATCATTCGGCAGAGAGCGAAATAGAGTTTATTCCCCGAATTGCGCCCTATCGAACGACCCGTAGGGAGTGAGATTGAGTTTATTCCCTGAATTGCGCCCTATCGAACGACCCGTGGAAACTCAGTGAATGCCTTCCTATGGGGCGGCATTCAGGGAGTGAGATTGAGTTCAGGAAGCAATTCATTGAGTTGTCCGCTCAAAACGCGGGTGGGGCGGAAGATTGTCGGAATTCCGACAGATTTATCTTCAGAACCAAGTCGATAGTGG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAACATACCTTTGATGCCGTTAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //