Array 1 20559-21683 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAOO01000343.1 Mycobacterium canettii CIPT 140070007 isolate STB-I, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 20559 24 100.0 37 ........................ TGGCGCGGGCTGGCGTCGGTCGTGGACTTGCAGGTGC 20620 24 100.0 37 ........................ GAACGCCACAGGCAAGTCCTCTCCGCTGTGGTTGTGC 20681 24 100.0 37 ........................ GTTGGGTGTCGAGGTCACAACCACCAACGCGACGTGC 20742 24 100.0 37 ........................ TCCAGGCCGCCGCCTTAAAGCGGCCTGGTGCGTGTGC 20803 24 100.0 37 ........................ GCCGAGACGCTCTCACCGGACATCAACTACAGGGTGC 20864 24 100.0 37 ........................ TCGGCTACCTCTGGACCGTACGTCTGGCTCCACGTGC 20925 24 100.0 37 ........................ CGCACTGCTCAACCAATCCGCACAAGGCGGCGGGTGC 20986 24 100.0 37 ........................ TAACTGTTCCGGGAGGGACAACACCCGACGTTTGTGC 21047 24 100.0 37 ........................ TCGCATGAGCATCGTAGACGCTGTAGCCCGTACGTGC 21108 24 100.0 37 ........................ CTGGGGGCCGTCACCGATCCCAACGTGGTGGCCGTGC 21169 24 100.0 37 ........................ TAAAAAGGGCAAAATTCCCGTATTCATCGGGATGTGC 21230 24 100.0 37 ........................ GCGGGGGCATCCTCGTCATTGTCGCTGGTCATGGTGC 21291 24 100.0 37 ........................ CACGCGCCTGCGCACGCCGCACGGCGGCCGCTCGTGC 21352 24 100.0 37 ........................ GCGGACCACAATGCGCTGACAACGTCCGTTTCAGTGC 21413 24 100.0 39 ........................ TCGTCGACTCCGCCAAACCAATTAGCCCACCGCGTGTGC 21476 24 100.0 37 ........................ TGTGTCCGGCGCGGCTGCGAAGAATGAGTTATCGTGC 21537 24 100.0 37 ........................ GGGAACCACCCAAAAAATGTTGACACACAGCACGTGC 21598 24 100.0 38 ........................ GCAGGCCGAGCCACATGCTGGCGCTGCGGCCAGAGTGC 21660 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 19 24 100.0 37 TCCCCGCAAACGCGGGGGTGATCC # Left flank : GACTTTTGACCGTTGTCGTTCTTACCGCCGTACCGCCAGGCCTACGAGGGCACTTGACTCGCTGGCTGCTTGAGATCAGCCCCGGGGTGTTTGTCGGCCACATCTCCGCGCGCGTCAGGGAGCTTATGTGGCAGCGCATAGTCGAATTCGTTACCGATGGGCGAGCTTTGATGGTTTACACCGCCCGCAACGAACAACGACTCGCCTTCAAGGTGCACGGCCATGATTGGGTTCCGGTTGACTACGACGGTATTTCGCTCATGCGCCGCCAGACGGTTCCCGATTATGTGCGAGCCAACCGACCGATCGGTGATGCGGTCAATCGCCTGCCACAGTCTGCCAGGGGCCAACCTATGGGAACGGCCTCAGACACCGTCTGGAAGCGCCGAAACGCCCGCAAGAAGTTCAAACGCAAGGCGTGACCAATTGGCATGTCGTTGCCGGCCGAATGAGCGAAATTTGTTGGTAAGATGAGCAATCGCCCTGGTCAGGAAGTGTGC # Right flank : GG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGCAAACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2579-112 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAOO01000498.1 Mycobacterium canettii CIPT 140070007 isolate STB-I, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 2578 24 100.0 37 ........................ GGCATGTCGCGCGCTCAGTCGCCACTGGATACAGTGC 2517 24 100.0 37 ........................ TGTGCTGTTGCCGGCATGGTCAGAACCGGCGGCGTGC 2456 24 100.0 37 ........................ GGTGAGGCGGCCGTCCAATCGTATCGCGCACCGGTGC 2395 24 100.0 37 ........................ CTCGTCGATTAATTCCGGTATGAGTTCCCGTGCGTGC 2334 24 100.0 37 ........................ ATTACTGTACACCCGGTTGTACACAGTCGCGAGGTGC 2273 24 100.0 37 ........................ GCCCTACACGAAGCCGTCGGCAAACGCCTCATCGTGC 2212 24 100.0 37 ........................ GCCTTCACCGATGTGATCAACACCATCATCGAGGTGC 2151 24 100.0 37 ........................ GGGATCGTGGCCGCGTTCGGCAGGCCCCTCGACGTGC 2090 24 100.0 37 ........................ GCTGGTCACCGCCGGCTACCGGGTCGTCGCGTTGTGC 2029 24 100.0 39 ........................ GCCAAACGTACAGGAAAGGATCCACACTGATGGGTGTGC 1966 24 100.0 37 ........................ GCTGACCCAACTGGCCGCACGCCTACACGACGCGTGC 1905 24 100.0 37 ........................ GCGGCCCAGCTTCTGCCCGCAATCCCGCTGGGAGTGC 1844 24 100.0 37 ........................ CCGAGTTGATGTATCAGGTACCGTCACTGCGCAGTGC 1783 24 100.0 37 ........................ TACATTCTCCCGGCGCTTGGGGCGCTGTTCGGGGTGC 1722 24 100.0 37 ........................ GAGGCGATTTCCCCGTGGGTCGACTGGCCGGAGGTGC 1661 24 100.0 37 ........................ GGCACTGCACTCGCAGCGGTCGCGCAGATGCCCGTGC 1600 24 100.0 37 ........................ CTATTTTCGGCGCACACACCCAATACCCAGTGCGTGC 1539 24 100.0 37 ........................ AGCGGCAGTGCAGACTATGGAGTCTAACCTTGGGTGC 1478 24 100.0 37 ........................ TTCTTTAACATCGTCTCGTTTACCGTTGAGCAGGTGC 1417 24 95.8 37 .......C................ CACGTTCCTGGCGGGCTTGGCGCAGGCGTTCAGGTGC 1356 24 100.0 37 ........................ CAAGCAGACGCACGAAACTACACCAACGTAATTGTGC 1295 24 100.0 37 ........................ GAATTAGCATGTGCGGCGGCGGAAGGATATGCCGTGC 1234 24 100.0 37 ........................ GGGCGCGTAGCCGTCGCGGGGCCGCAAGCGCAGGTGC 1173 24 100.0 37 ........................ GTCGCGTTCACGAACCGCGGAACCCTCTCTTAGGTGC 1112 24 100.0 37 ........................ GCTAGAGCTGTAGATTGATCCGCCCGGCTGCCCGTGC 1051 24 100.0 37 ........................ GATTCCGCGCACCGCCGGGCGTCGCGGAGTGGCGTGC 990 24 100.0 37 ........................ GTCGAATTCTTTTGGCTTGCTGAACCCGTACTCGTGC 929 24 100.0 37 ........................ TGCGTTGTGGATCGCATCTGGCATTCGCTGACCGTGC 868 24 100.0 37 ........................ CAAACCCCCCGCCCCGCCCCGCCTTGCCCCCCCGTGC 807 24 100.0 38 ........................ ACCGCCCCTGCCGAGGGTTTCCGGGATGCGATCAGTGC 745 24 100.0 37 ........................ GATGGTCGATCTGGCGATCGGTGAACTCCTCAGGTGC 684 24 100.0 37 ........................ GGCTCAACATGGGCGTGGAAGTCGGCTGCGAACGTGC 623 24 100.0 37 ........................ TCCAGAGGTCGAAGTGATGTTCGGTGTTCTCCTGTGC 562 24 100.0 37 ........................ GCACACAGCAGCAACTCGCGCAGCAACAAGGATGTGC 501 24 100.0 37 ........................ TGGAGAGACTCGGCTGCGGTCAGCGCCTCCTGAGTGC 440 24 100.0 37 ........................ CCAGACGGCCACGCCGTCACACGTCACGCACAAGTGC 379 24 100.0 37 ........................ CCGTGGAACAAAGCGTTCAGGATCGCCTCGAAAGTGC 318 24 100.0 37 ........................ TTGGCTGATGGAACCGGTGCGCGATGCTATTGCGTGC 257 24 100.0 37 ........................ TGCTGTGAGAAATATTCCGGCGTCTTTGTCCTCGTGC 196 24 100.0 37 ........................ GCCGGCCGATAAACTGCTGGGCCGCGGCCAGTGGTGC 135 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 41 24 99.9 37 TCCCCGCAAACGCGGGGGTGATCC # Left flank : GCTGCGGCCAGAGTG # Right flank : CCAATTCGGCCGTGGTGCCCCGTGGCTCCCCCGGGGTGCGGTGCATCGGCGGGAGCACAAAACGCGCTTAGCGGATGACCGGACGGCGCACCGGAGAGTCGCCAAGAACGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGCAAACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [28.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //