Array 1 299299-297410 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLJZ01000012.1 Lacticaseibacillus rhamnosus strain ASCC 3029 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 299298 36 100.0 31 .................................... TTTAGAATACGATTATAAGACAGTAGTTTGG 299231 36 100.0 30 .................................... AGTAAGGTAGCCAAATACAACCATAAGGGT 299165 36 100.0 30 .................................... AACTATCTAACACGCTATACACAGAATGGC 299099 36 100.0 30 .................................... TTTAATATGCAGGCGGCGACTGATTTATTT 299033 36 100.0 30 .................................... TTTAATATGCAGGCGGCGACTGATTTATTT 298967 36 100.0 30 .................................... TGATTTGCGAGATGTCGCGATAAGAAGTCA 298901 36 100.0 30 .................................... GACAACAGACTCCGTCAACATCAGTCTTAA 298835 36 100.0 30 .................................... ATAAACATCGTATGCGAATCGTAACAACGT 298769 36 100.0 30 .................................... AGTTGATTGAGGCGCGGATGTACATTCCTG 298703 36 100.0 30 .................................... CCGTTTTGGTTGCAAAACGAACCGATTACG 298637 36 100.0 30 .................................... AAGGTGTACTGCTTAGCTGACTCCCACGTG 298571 36 100.0 30 .................................... CTCGTGACTTGTCGTGATATGCATACGCGC 298505 36 100.0 30 .................................... GAAAGTTCTTTAAGTTGACCACTCATTTCA 298439 36 100.0 32 .................................... TCAGGGTGCCGGCTACATATACACGACTTTCG 298371 36 100.0 30 .................................... TCTGGAAGCCCGCAATAGTCAATTGAAGCT 298305 36 100.0 30 .................................... AAATGGTTTGAATACCCTTATCCCGCCATT 298239 36 100.0 30 .................................... TAATGACGCTTAACGCTCTCCGGTTGGTCT 298173 36 100.0 30 .................................... AGTCGTGCAAATCCACGTGCGCGCGTTGCA 298107 36 100.0 30 .................................... TTTTATGATGGGCTTGTATTTTCCCAAATA 298041 36 100.0 30 .................................... GGCAATTTTAAAGCCGTGACCGATGCCACG 297975 36 100.0 30 .................................... ATGACGCAGTTGGCGAAACCTTTGCACGTT 297909 36 100.0 30 .................................... TCGCTGACATTGACCATCAACGGCGCCGAG 297843 36 100.0 30 .................................... GCGTGTTAGTCGCTTGTGTGGCTTACCGTT 297777 36 100.0 30 .................................... GCGGCATCTTCAAAATCAAAACGACGCGCA 297711 36 100.0 30 .................................... GTTGACGCGTTGCGCTGTCGCTGGCCGTTG 297645 36 100.0 30 .................................... AAGCAACATATCAATCAAGCCGAAAAAAAG 297579 36 100.0 30 .................................... TGATGACGAAGTGAGTTTGCCCACCGCTTG 297513 36 100.0 30 .................................... ACTCGGGTATTGACAAAGATCGACGCGGCA 297447 36 86.1 0 .......................AA.C....G...G | T,C [297413,297419] ========== ====== ====== ====== ==================================== ================================ ================== 29 36 99.5 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GAGCTGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAAAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAGGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTGCCAACATCAGTCATTATTTAGATGTTGAAAGTCTGAGCAAGCTGTTAGATCAGGTTAAGAACACATCGTTGGAATTACTTCTCATTGAATTTTCAGATGTCGAACGCAGAAAGTTTTTTGAGAAGTGCCAGTATATCTATATTGACAGAGATTTTATGGATAGCCGAGAACTGATTGATTAAGAGGCTGTGTGAAAACACCG # Right flank : ACTCACCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCGCCAGTATTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGAAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAACCGTTGAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCTCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTTTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //