Array 1 819-94 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFK01000063.1 Limosilactobacillus ingluviei DSM 15946 NODE_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ====================================== ================== 818 34 100.0 37 .................................. GTTTTGACGAACGACTTGCTGGCTGACACGGCTGAAG 747 34 100.0 33 .................................. ACCATTCTGCTGCTGCGGTCAGGAATGGCCACG 680 34 100.0 38 .................................. GTTAATTAAGAAATTCGTGTACGTTGACCAGCCGGTCG 608 34 100.0 34 .................................. AAATTTCGGTGTGCGTTTCGTCCGTGAGCTGGAC 540 34 100.0 35 .................................. GCCGAAGAAACTAGCTAGTCCTTGCCACACGCCTA 471 34 100.0 37 .................................. TGTTTAACGTCCACTACCGCTAACGGACAAGTCTAAT 400 34 100.0 33 .................................. GACCAATTAATACTCACATGGAATTAGATTAAC 333 34 100.0 34 .................................. GCGCCTTTGGCCTACGACGCCGCGAAAGCTTCTC 265 34 100.0 36 .................................. ACTTACGATCTAAGTTTAAACCAATCAATGAATTGG 195 34 100.0 34 .................................. TACCACTCGCGGGAGTGGCAAGCGGTACGGCAGC 127 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ====================================== ================== 11 34 100.0 35 ATCGCACTCTGTAATGGAGTGCGTGGATTGAAAT # Left flank : CGTGGTGATTTAGATATGTATCCGCCGTTTTTATGGAAGTAGGAGGGATCAATGATGATGGTGGTAGTAGCCTACGATGTAAAAACCAGTGATCCCCAGGGGGCACGCCGTTTACGACGGGTGGCTAAGCAATGCTTAAATTATGGGCAACGCGCGCAAAATTCCGTCTTTGAGTGTTTAATTGATGAAACAAATTTCCAAAAACTTAAATTAGAACTGTTGGCAATTATTGATGAGGAGCAGGACAGCTTGCGCTTTTATCGACTTGGTAACCATTATCAAGGTAAAATTGAGGTATACGGAGCAAAGCAAACCTTGGCTCTAGATGAGCCGTTGATTATTTGAGACTTGGTGCGAACCCTTAGTGCACATGTTCTCCCTAGGGGGTTCGCACCGATAAACAGCGCAAGAGTGTCTTCTTTCAAGACGTTCGTTCTGCGCTTTATGTATTTTTTAGTCGCAAGATGTGGATTTTGGGGTCCAAAACACCATATCTTGCG # Right flank : TATGCGGTACTGGCAAAAACGGTACCAGTGTTGCCCCCATTGATATGCTCCCTTTTAGGTGGAGAAACGAATTATGTAAAATTCGATCTCACCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTGTAATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: R [matched GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 12302-11845 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFK01000063.1 Limosilactobacillus ingluviei DSM 15946 NODE_103, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 12301 35 100.0 37 ................................... AAATCGTAGACGTGCTTAATGCTACCGTCATGGTCAT 12229 35 100.0 35 ................................... TCGATACTATCGCTAATATCATCAATTGCTTGGTT 12159 35 100.0 33 ................................... AAACACAGAGCAATCGATTGACGGCAAGCTCAA 12091 35 100.0 35 ................................... GCGTTAGCTTTGCCATGCCACTCACCTCCTTAAAA 12021 35 97.1 35 ........................T.......... GGGCACACTAACATGGTCGCTAAATGCCAAGGCTT 11951 35 88.6 37 ......C.......A.........T.A........ GGCAGTCTCTGCACCGATATTAGCGTTGCTGGACAGC 11879 35 91.4 0 .........A....C.........T.......... | ========== ====== ====== ====== =================================== ===================================== ================== 7 35 96.7 36 GTCGCATCCGGATCTTCGGGTGCGCGGATTGAAAT # Left flank : ATTACCTGAAGGCTTTGATCAATGAAGTGTTGGCAGCTCGACTTGCCGGCGATGAGGTTAGCCACCAAATAATCGTGTACGACTGTTCAGCTGGCAAAATTCGACTATGCTGGCAATTGTTTCAAGAGGCGGTAGTGGATATTTTGACGATATAACAAACGCTGTGAACCGACGCTATTACCAGCTGTATGATCGGTTGGATGATTCTGAGCGGGATTAGTGGCTAGTACTGGTTGAGAGGTTGGGAAGATCAATTGAGGACATTGCTTGATTAATTTCAAATTGGACAGTACAGTAACGGTAAAGCAGTTTTGCTATGATCCTTGGAACTGAATTGTTGGCGTAGGAAAGCGTGCGAACCGGAATTGCACATAAAAGTTACGGGGGTTTCGCACCAATTAATTCAGGTAGATGTCTTATTTGGAGACGCTTTGGCGAATTCGAAACACTTAGTTTTAGCCGTAAATCTTTGAAGTGGCTTTACCAGACCATTGTTTGCA # Right flank : GACGGGTGAACAATGATTACAGACACGCCTTTTATGGTTAGAAGGTTGAAGGAGATACTTACTAACTATGGTGTGTTATTAGGTGGCGTGACGTTTTCATCGGATAGAAATTGTTTTTTATCTGAAAGCAATTTCAAAAGCTCGTTTTAATATATGGGATGGTAATACGACATATGGTAAAATGATAGTGAGACAGAAAGAGGGTGGAAATATGATTTCGGTTGTTGACAATTATATGAAGAATAAAGGGATTACGATCACTGACATAGCGAAGGCTTCTGGGATTAGTATTTCAACGTTGAGTAATGCCTTTAAGAAGCCCGTTGCCAATTGGAGTATTCGCATTTTAAATGGTCTCGCTGCAACAACCTTTGATGATCCGGCCCAAGTCTTAACGGAATTACAACCGCGACCGTTTAAGTATGTGGTTGATGATGATAAGCAAACGATTCAAGGCTTTCATATTGAAGACCCACATTTGTTTTGGGTCGTCGAAGCTG # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCGGATCTTCGGGTGCGCGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCGGATCTTCGGGTGCGTGGATTGAAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 57-431 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFK01000087.1 Limosilactobacillus ingluviei DSM 15946 NODE_219, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 57 34 100.0 35 .................................. ATTGATGACGACGGCGATGTGAAGACCGACACCGG 126 34 100.0 35 .................................. ACTACAGAAGAGGGCTGGGGCTGTGAATATCGCGA 195 34 100.0 33 .................................. GGCTCGCAGGCATCGGATATATTTTGCCGGATC 262 34 100.0 35 .................................. TTACCAAAGGTCCAAACGCCAAAGGGTAGTATTGT 331 34 100.0 33 .................................. GGCGTGCCAGAAAACGGAAATTAATATGTAGTA 398 34 88.2 0 ..............C........C..T..A.... | ========== ====== ====== ====== ================================== =================================== ================== 6 34 98.0 34 ATCGCACTCTGTAATGGAGTGCGTGGATTGAAAT # Left flank : CTAGCTGCCTAATCATTTACATAATTCAACTTTCCACTTGACAGGGTCCAGTTCACA # Right flank : TAGTCAGACCATTCCCTTTTACGTTGATACTAGTTGATACAAATGTTACTATGGTACTAGCAAAATGTTATGATTTACCAAAGGAGGGCGACAAGATGAACCAAGGGGAGTTAACGCTTAGCAAGTGGGGGAATAGTTTGTCGATTCGTTTACCACAAAAGTTATTAAATCAATTTGGGCTGGAACAAAATGATAAGTTTGAGTTTAAGGCTACTGATAATGAGATTATTTTGAAGCCAGTCAAAGAAACGAAAGCGATTGATAAGCTTCTAGCTGGATATGACCGTAGTCAGCCATACCCAATGGAAGTGGTTGACAAAGGGGGCGCAGTGGGTGAAGAACTTTATTAAATGATGGGTTCTGATAAGCTGCGCCAATGCGCTTTAATACGAATAATAAATTTATGGAGGTGTCCATGTGAGTGTACAAAAGCCGCTGGCTAAAGGCGACATTATCCTGGTTTCAAATGATCCAAAGCCACATCACAATCGGGAGCAAAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTGTAATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: F [matched GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1593-2039 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFK01000087.1 Limosilactobacillus ingluviei DSM 15946 NODE_219, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ===================================== ================== 1593 34 100.0 35 .................................. AGCATTTGGTCATGCTGGGCCGTGGCCACCAATTG 1662 34 100.0 34 .................................. CTTGCCAGTTGTGGCATGGGCTACTTTATCGGCT 1730 34 100.0 37 .................................. TGCAACTCGGGGATATCGATCCAGTCCTTGCCCCCGT 1801 34 100.0 36 .................................. TTGGAAAGAAATGCAGTCAACGGCAGTCAAAGAACA 1871 34 100.0 33 .................................. ATTTACAGCCCGGTATGTAAGTCTATTTAACGA 1938 34 97.1 34 ........T......................... ACGCGGACGTGTAAATGGGCATAGTAGTGATCAT 2006 34 97.1 0 ...........C...................... | ========== ====== ====== ====== ================================== ===================================== ================== 7 34 99.2 35 ATCGCACTCTGTAACGGAGTGCGTGGATTGAAAT # Left flank : TCAATTGACAACGCTTGATGTTGTCCATCGTTACTATAGTTTCCTTGAACATACTGATGTGCCGGTAGAGGTGGATCAACTGGTAAAAGCAATCTTGGGGTTTGAGTAATCAAGGTTGCTGGCCAAGTTATCTCATCACTTATTAGCAATTAAAGCATTAGAAACGTGAATTGAATCGATTAAGATAATATCTGCTAATGTGTGAGGAAACTAAGTAAGTGGGGCTAGTTAACAATAATTTAAACTAAGTTAGTAGGGACTAGAAAAGAATTGTTAAGCCAACTATTAAGTAAATGTTAGGCTTCCCTCGTAGATACTCTGCTGCTTCCTTAGAAAAGAGGTGCGAACCTTAGGTAAACATATTTTGCCCGGAAGATTCGCACCAACAAAACATGCGATTAAGTCTCATTGGGAGACATTTGGCTTGCGTGGTTTGTCATTTTTAGTCGCAAGATTACATAGAAAAGCTGTATTTTAGACTTGAACCACAATATCTTGCG # Right flank : TGATCGGTCCAAACCTACTACTGATATTAAAGTAATTCAAGCCCGTTACGATCATGCTATTTCGCAATATCGTAAAGAGACTGGTATTGATGTAGTTAAGCTGATGGCGCCGGAAAATTCATCGATGAGAGTAATCTATACGATGATGAGAAAGTAAAATTTGTTAAGTGGCTGGTGGTTCGGAACGGGTATAATACGATTCCAACGCCGGTTGATCAGTATAGTGGGCAAATTGTTTACCGTGGGGTTCACGATAGCGACGGGGTAACAGCCGATGAATTTATTGAGAAGCTTAAAACCACATCATTAATGATTTCGGGAGCAGATAGTTCTTCGAAAGGCCGAGGAGCTTATTTTTCTGAAGATGATTTTCAAGCGCAAATGCATTCGTTGCGCGGCGCAAATTCTAAGGTTACGGAATGGGGAATTAATTCTAAAGCTAAAGTACTTGATATTATCGATTCATCAAAAATGCTTGCAAATCTTGAAAATATTACTGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTGTAACGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 11356-12907 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZFK01000053.1 Limosilactobacillus ingluviei DSM 15946 NODE_75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ====================================== ================== 11356 34 100.0 35 .................................. GCGTTTATTAAGTTGGCTGATGGGCGGATTGACTA 11425 34 100.0 35 .................................. CGTTTAGCCTCCGTCGAGGATTACCGTATGCTCTT 11494 34 100.0 37 .................................. CGTCGACACAAACATGACACTACGCCCCTGCTTGCGA 11565 34 100.0 34 .................................. AATGCACGGGTATTACACAACGCCCAAACGTGAT 11633 34 100.0 37 .................................. GGTTCCTGCTTTCAATTTTCCGTGTCTACATCTACTG 11704 34 100.0 37 .................................. GCTTGAGGTTAAGTACACTGCCGAATGCGCAAAGCCT 11775 34 100.0 34 .................................. GGAAATTGTACCCCGCATGTACTTGGCAAAGTAC 11843 34 100.0 34 .................................. GCCATCAGCCACCGCGTCCGGATCCGGCGGTAGC 11911 34 100.0 33 .................................. ATCCTTAGTAATCCAACCAGTAATAACACCATT 11978 34 100.0 34 .................................. AGCGCGGCCTCGGTCTGATCAATGATCAAGTCAA 12046 34 100.0 36 .................................. CAGTCCTTGGTCCGTTTCCGCCCGTGTTTTGCTTTC 12116 34 100.0 34 .................................. TCTGTATGCAGATAAAGCAAATAGTTATGATAAG 12184 34 100.0 34 .................................. CAGTTTACGTCAACGTACATTGCCGGCGGACTTG 12252 34 100.0 35 .................................. AATGACTGAGTATGTATTTAATTTGCCGGTAGAAC 12321 34 100.0 36 .................................. TTTTCGTGTCAGATATTGACACATTTTTCAAAAAAG 12391 34 100.0 35 .................................. TGGGCATTAAATTGAGCCCGGGCTGATTCAGTCCG 12460 34 100.0 34 .................................. TATTACATATTTTTGCTAGTCACTGCCATCGTGC 12528 34 100.0 35 .................................. CCGCCAAAATTACGTTTGATGATGACGACCAGGTC 12597 34 97.1 35 .........C........................ CAACCATTTATTTATCGTGACGAGAAATCGATCAA 12666 34 100.0 35 .................................. TACTCGCGACGAGATCGGCCGCCATCCAAGCTACG 12735 34 100.0 38 .................................. TGCCATAGCATTAGCGGAACCGGCTTACCAGTATCCAC 12807 34 100.0 33 .................................. GACAAAAACAAGCAAATCGTCATGGCGGCCGAT 12874 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ====================================== ================== 23 34 99.9 35 GTCGCACTCTGTAATGGAGTGCGTGGATTGAAAT # Left flank : GGGAAATATGATTTACCGGGTCTCCGGGAAAACCAATTTGGCGGACTTCGAGCGTTACTTTGATGTTGATATTCCGCAATTTGAAGATTTGGATGTGGCAACTTTAAACGGTTTCTTCCTAGAAGAAGAATATAGTTTGAAGTTAAATCATCCCTTACGGGTTGGAAACTTCTCATTTATCCCGGTTGAAATGGAAAACTCGAATGTCAAGGAGTTCCGGGTTACGCAAATTAAACCAAAGAAAAAGGTTAAGGACGAAGAAGCTGTTGATCAAACTGAGAAAAAATAATAGTGTGATCGAAGTGAGGGAAGGTAGGCATAGTACCACCTTCCTTTTTTAGTAAAGACATTGGTGCGAACCTAAAGTAAACATACTTTTCCCGGTAGGTTCGCACCAACAAAAGCTATAAATCGTCTTACAATAAGTCGTTGAACTTGAATCGCGCAAAAATTTTTAGCCGCAACTAGTAATATAGCAGAATAAACCACTATATGTTGCG # Right flank : TTTAGCAGACGCCAACACAACCGCAAGACGTTAATGTCGCACTCTGTATTGGAATTTTCTTAACTCGTTCCTATAAAGCGTGCAGCAATCCAGGAGGCAATGTTGTCCTTGCCAGCGCCATTGTTGTTATCGCCATTGCCAAAGTTGCCACCAAACTTAATTGGTTGGCCGGCATTCTCAGCGTTAAACAAATAGCTGTCGGACTTCTTGACTGCCTCGATCTGGTCGGTCAAACCATCCAGGGTCCCGTCTTTTTGCACGCTAACCTTTTCCGTGTCGATCAAAGAGAGTACGGCTTTAACGTTCTTGGCCTTAGCGTCGCGCAGAGCACCTTCGATCTTAAAGCCTTTTTCCTTAGCGGCTAGATCGTTTTGGTACTTGGCAGCGGCGGCTTTGTTATCTTCTTGCAGTTGCTTAATCGTGGCTTCCAGTTCTTCGTTCTTCCCAGCGTTCTTNNNNNNNNNNATGCTTTAGGTTGTCACGTTCACTGGTCAAGCTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTAATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: F [matched GTCTCACTCTGTTATGGAGTGAGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //