Array 1 174586-174068 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSP01000009.1 Salmonella enterica subsp. enterica serovar Anatum strain 51 NODE_9_length_191702_cov_34.2125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 174585 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 174524 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 174463 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 174402 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 174341 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 174280 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 174219 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 174158 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 174097 29 93.1 0 ............TC............... | A [174070] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 191676-190855 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSP01000009.1 Salmonella enterica subsp. enterica serovar Anatum strain 51 NODE_9_length_191702_cov_34.2125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 191675 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 191614 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 191553 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 191492 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 191431 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 191370 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 191309 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 191248 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 191187 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 191126 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 191065 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 191004 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 190943 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 190882 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATCGTTATCAATGGGGAAAGAGAT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 461202-462267 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSP01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain 51 NODE_3_length_462304_cov_37.807, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 461202 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 461263 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 461324 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 461385 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 461446 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 461507 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 461568 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 461629 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 461690 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 461751 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 461812 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 461873 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 461934 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 461995 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 462056 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 462117 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 462178 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 462239 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TACCGCGACACCGTCAACGACAGCAACCACTTGTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //