Array 1 578130-573401 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007034.1 Barnesiella viscericola DSM 18177 strain C46, DSM 18177 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 578129 47 100.0 30 ............................................... GACAAAAACACAAGGCCGGAGCGGTTTAGG 578052 47 100.0 30 ............................................... TTATCATCTCGGAGGCTGCGACAAAGATAT 577975 47 100.0 30 ............................................... ACCGACAGAGCCGAGAAACCGACAAGACAA 577898 47 100.0 29 ............................................... GTAGAACGCTGAAATATCTTCCCGGCCGC 577822 47 100.0 30 ............................................... TCTTTTTGAGCTTGGGTTTTCAAATTCTTG 577745 47 100.0 30 ............................................... TGCAAGTCCTTGATTCCGGCCGACGTCAAA 577668 47 100.0 30 ............................................... GTAAAGCTCGTCGTCCCGACAGTCTTTATA 577591 47 100.0 29 ............................................... CACTCCAAGTTTGGTGACCTCTACGTTAT 577515 47 100.0 30 ............................................... CTATATTCCCAGATTGATAGGTCAAAGTAG 577438 47 100.0 30 ............................................... CATCTCCATAAGTACGTCACCGCGAGGAGA 577361 47 100.0 30 ............................................... CTCGTTGGTGATGCTATTGCTTCTGGTTTT 577284 47 100.0 30 ............................................... GCTTCTCTCTTGCGCCTTTTCGATTTAATG 577207 47 100.0 30 ............................................... TTTTCCAGATAATGTCCCACCAGCGCTGAA 577130 47 100.0 30 ............................................... CGAACGAGCGGCCTATGTATTCGGTTCCGA 577053 47 100.0 30 ............................................... TATCTATTTATCACTCTTTTTTCTTTGAAG 576976 47 100.0 30 ............................................... AGGTTTGAGCTTCGGGGCCTTTGGTGTCGT 576899 47 100.0 29 ............................................... CCAACGGGAAAGATAGCGGTGTACTTTTG 576823 47 100.0 30 ............................................... TAGTCAAAAAGTCCTTCTCCCAGTTAGCAC 576746 47 100.0 30 ............................................... TGATGGGCAAGGTCACCAACATCAACAGAA 576669 47 100.0 29 ............................................... AGGCTCCCAAGGGTATGAATTCTACTTTT 576593 47 100.0 29 ............................................... AAAATTGAGAGTAAGGCTCGCGATATGGC 576517 47 100.0 29 ............................................... CAGGGCACCAACTGATACATATAAAATAC 576441 47 100.0 30 ............................................... GGGCTACCCCGAAATTAGGTTTGCAGTTCA 576364 47 100.0 29 ............................................... TACGATGGCTATCAAAAGCAACTACCAAG 576288 47 100.0 30 ............................................... CGACGGTTGAGAAGGCAGGTCGACCAAGCA 576211 47 100.0 30 ............................................... TTGGCTTCCTCGTATCTCTTTTCGAGGGCC 576134 47 100.0 30 ............................................... ACAATGTCAAGAGCCACTCGGGTTTTCCCG 576057 47 100.0 30 ............................................... GGCGGTGGTCGGTTATGAACAGCCGCGTGT 575980 47 100.0 29 ............................................... TCACTCTTATGCACATTCACCAACTTGGA 575904 47 100.0 30 ............................................... AAAAATCACTGTCGGGCGATGCAAAGTGAC 575827 47 100.0 30 ............................................... CGATAGCGAGTTTTTCGTCGGCTGTAAGTT 575750 47 100.0 30 ............................................... CGCCCCGTCAGGGTCCAGTTTGTCGTGGTC 575673 47 100.0 30 ............................................... TCGTCTCTGATAGCTTATTACACCATTCTG 575596 47 100.0 30 ............................................... ACGAACACGAGAGAAACATACGGAACCAAT 575519 47 100.0 30 ............................................... ATTGCGGATTAGGGTGTTGACTAAATGCAG 575442 47 100.0 30 ............................................... TCAAAAGCACTTTGCAAATCCTGCGCCATG 575365 47 100.0 30 ............................................... TTCCGATCGAGACTTTCATTTCTCTTCCTC 575288 47 100.0 30 ............................................... GAAGAGCCTTATCATGATTTTGCCTCTGCC 575211 47 100.0 29 ............................................... TGATGTTCTTTTGACCTTCGTGTCAAAAA 575135 47 100.0 30 ............................................... CGTTATACCGTTGTTGCTGCCATTGAGCGT 575058 47 100.0 30 ............................................... GTCAATTCCTTCACTTTCTGAGGCGTCAAA 574981 47 100.0 30 ............................................... TGGCTGATATGGATTTAACAAAGGCCGAAA 574904 47 100.0 30 ............................................... ATTGTGACATTGACTACCTCGAAAGAGGCC 574827 47 100.0 29 ............................................... TGGCGTGTATTTTTATTCGTTATCTTCGT 574751 47 100.0 29 ............................................... TTTAAATTAAGTTTATAATATTTTTGTTT 574675 47 100.0 29 ............................................... GACGTCGAGGTGCGTTATGATGATTTGAA 574599 47 100.0 30 ............................................... TTCCGGTGAGTGAAACGAATCACCCCGACA 574522 47 100.0 30 ............................................... CTTTTCTATTTCGGGCTGCCAAAATCGACC 574445 47 100.0 30 ............................................... GTCAATTCCTTCACTTTCTGAGGCGTCAAA 574368 47 100.0 29 ............................................... TGGCTGATATGGATTTAACAAAGGCCGAA 574292 47 100.0 30 ............................................... TACAAAACTCATCAAGGCATTTTTTATATA 574215 47 100.0 30 ............................................... ATTGACTTATGAAGCCGGTCTGCCACCTCT 574138 47 100.0 30 ............................................... GCGCGTCTTTCAGATTTTTTTTACTCATGT 574061 47 100.0 30 ............................................... ATTGAATTATTTTCGTATCTAATCAATAAA 573984 47 100.0 29 ............................................... ATGACGGAGATATAGTAGTTGGAAATTCT 573908 47 100.0 30 ............................................... TGCTGGTTGCAGAACTCTTCGGTCGAGAAA 573831 47 100.0 30 ............................................... CCATAAGCAAGTATTTCGGCTTTTTGGCTT 573754 47 100.0 30 ............................................... CGTCCATATATTCGGTTGTCGTTTGTTCGT 573677 47 100.0 29 ............................................... AGGCTGTCGATGAGTGTCCGCATCACGCT 573601 47 100.0 30 ............................................... AATGAAGCTGATGCTAATAAAAGACGTTAT 573524 47 100.0 29 ............................................... CGGCGGCGCTGCTGGCGGTGCCGTCAAAC 573448 46 80.9 0 ........................G...GGC......-.G.GG...A | GT [573422] ========== ====== ====== ====== =============================================== ============================== ================== 62 47 99.7 30 GCTGTATTTAATAAGTCAAAGATACAAATTTGAGAGCGAATCACAAC # Left flank : GCTCTACAAATGTTTTTGTGGAGAATTGCGCAAAATAGTTTACCCCGAGATGTGATGAGCCTCGACCGTTTCAGTGAATATCGCATTATGTGGGTATTGGTATTTTTTGATTTACCGACAGAGACCAAACGGGAGCGGAAATTCTATGCCGAATTTCGTAAGAAACTTATACAAGACGGTTTCACCATGTTTCAATTCTCTATTTATGTGCGGCATTGTCCCAGTCGAGAAAATGCCGAGGTGCATATTCGCCGGGTAAAACTTTCATTGCCCCCGTTGGGAAAAGTCGGAATCTTGTGCATTACCGACAAGCAGTTTGGTTTGATGGAGATATTTTATCGCGCCAAGGAGGCCAAGCCGCAGGTCCCTCCACAGCAACTCGAATTGTTCTAAATCTAAAAAGCCGACCATACGATCGGCTTTTTAGTGAAATACAGCTTTGATTTTAATTTCTAATAATTGCTATAATCGGTTGACTATTAATGAGCTATACAGATTGT # Right flank : CGAAAACGGTGTTTTCAAGTTTGACAAGGCCGAGCCACCTCCTATCTTCTTGAAAGATACAAATTTGAAAGCGGATCACAACACTTGCGGATGACGATTGTGAGGTCCACGCGCTGCATTTAATAAGTCAAAGAGGGTGAAAGGAGAGTACCCAACAAACAGCCGTTACGATTTGAGGGTCGATGTCGGATCGGTAGCGGGTTTTCATGGTGAGTCGGTGGGCGTTTGGTTGATTAGACGATGCCGCCGCCGAGCAGGAGCCGCAAGATGCCTACGATAATCGAGACGATGCAGAGGGTCTTGCCGTTGTCCGACTTGATGAGGACGCAGATAATCAGGAAGATAATCGATAGGGGTATGGCTACCCAGTTGAGTATTCCCAGCAGGGGAATGAAGGCTACCAGGGTGACGAGTAGCGCGATGATGCCTAAGAGTGTTCCCATTGTATCGCTTGGTTTTGTGGGTATAACAAATGTGTGCCGCAAGGGGTTGACCCGCAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTATTTAATAAGTCAAAGATACAAATTTGAGAGCGAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2808184-2808419 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007034.1 Barnesiella viscericola DSM 18177 strain C46, DSM 18177 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 2808184 29 100.0 39 ............................. TAAGACCCAGAATATTTTCCATTAGTAAAAACATCGACT 2808252 29 100.0 41 ............................. TAAGACGTAGTGATTAATTGTTTCTTAGCTTTCATATCTCA 2808322 29 100.0 40 ............................. TAAGACCCATAATAATGGCAACAAAACCAAACTTTTTCAT 2808391 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ========================================= ================== 4 29 100.0 40 GTACATTACTATTCCATTATAACAAGGAT # Left flank : TTCTTGATGTGCCTGATTATTAGATATTTGCAAAATAGACCTGTCGAGTGTTGGGACGTAAATTTTCGCAAATGTATGATTTTGAGAAAAATGGAGAATCACTTGCGAAAAAAAGAGGACCTCTGTAGATAACCTGTATTGATTATCAGCGTGTTGCGTGTTGTTAAAAAGCCGTTTTTTCGCAAATACCCTATTTTATTAAATATGACTTTTCATTTGCGAAAATTTGTTTGTATTTAATTTGTTGATATGCAGATATTTAATTAAAATTTACAGTCGGTTTCCTTTGAAATGAGATTATCGAAAAGGGACTTTTGCGAAAATTTTGGAGTGTAAGGCATAACTTATTGATTTCTTTTACTATCTTTGAATAAGATAGGATGCGGTTCGGAATAAAAAATATCATAAACAGAGTTTCGATATTTTATTCTTCGCTCCCTTTCACTATCTTTGCGTTCATAGTAAATCATATAGTTCTTTAACTTATTGATTTTCGTGTT # Right flank : TAAGGGGCTATGAAGCAAATGCTTTCATAGCGATTCGGGAGGAGATAGGTCGTGCCATAGGAATGGAGGCGATGGACTTTTAAGAAAAAAATGTGCTTTTTTGCAGGTGTGTAATAAATATTTTATAAATTGCGAAAGATTTATAAAAAACAGAACCATGAAAACTACACCACCTGATGCTATGAAGGTAATTGTTGCAGGAGGACATTCTTTTACAGATAAACGAATGGTTTGCAGGTCGATAGGAACTGCATATTGAAATACCGGGAGAGCAATAGGGGGACGGAGTGGCGGAATAAACCAGTTAAAGACTTTTATGTTGAAATCTTCAGAAATTGACAAGGAGAAAATCATTTTCCTTTTGGGGGGACACGATCTTGAAATGTGTACCATAAAAGAGTTGCTTTGTGAACAAGGCGTTCGATATTTCGATGCGGGCTTGCGTTGGGACAATGCCCGGTTGAGTGCGTATGCCCCGGTGCTGGAACAGTATGGCAACT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACATTACTATTCCATTATAACAAGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //