Array 1 3277-3875 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYE01000130.1 Acidithiobacillus caldus strain DX Contig130, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 3277 37 100.0 33 ..................................... TGAGCAAGTGTCTGTTGAGGATGCAGAGTTTAT 3347 37 100.0 33 ..................................... TTCAGCAAAAGCAAAAGCGGAATTTGAGGATAT 3417 37 100.0 33 ..................................... AGCGGAGAACTTCAACTTGAACATTCCAGCCAA 3487 37 100.0 33 ..................................... GGATCGCCTAATAGAATCAATGGGAAACGCACC 3557 37 100.0 34 ..................................... CTACGTCTTTCTCGAAGGTCTTTTCAACGTACAG 3628 37 100.0 34 ..................................... CTGCCTGGGTTCACTAAGTAACTTGGAAGATTAC 3699 37 100.0 32 ..................................... ACAACAAAAACAAAAGTGGTGGAAGATCTTCT 3768 37 97.3 34 ....................................G CAGGCTTTCTGGACACGAGCATGACCCTCTCGGA 3839 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 9 37 99.7 33 GTCTTAATCCCTTATTCATCAGGGCAATGTATCGAAC # Left flank : CCAGCACGAGCACATCAATCTTGGCCAGGCGTTGGAGGAGCTTGGGATAGCGGCCGTCCGCATGGGCAATTTCAAGGTCGGCGAGCTGCCTGGGAAGGCGCTGGTAGAGCACATGATAGCCGTCCCGACAGGCCTGATGGCCCAGGGCACAGGCGATGTAGGTCTTGCCGACACCGGTGGGTCCCAGAACGAGCACATTCGCGCAAATAGGACAGGGCCGCGGCAAGGCCTGGGCGCTCGGCTTTGGCTCCCGATACCTTGTCCTCGAAGATTCGGCTACAGCCGGCTTTCTGGAGGGCGTCGGTCTGGAGCGCGGTGTCTTGCTCGGCGGTGGATACCCGCGCGTAGCCGATCCGGGCCATGGTGGCCTCCTTATGTCCAGTTTATCGTCCATTTATCTTTTCGTTCGGCAAACCGATTGTCAAGCTATTCTGGGACGCTTGCCTGGGCTGTCCATTAAAGGAACCAATGTTGGCCGGGAGGATAGAGGATGAAGTGTA # Right flank : CCACCCCCACCAAAAGAAGCCGTAAAAACAATGTATTGGGAGAGGGTTTCCCAAAAAATCTCGGGTCTCGATTGGCAAGGAACTTGCATGGGGTTTTCTCCATACGTATTCAGCATTGTGCCAAAACGTTGCATCCCAGGCCAGGGGGGCTCGGAAGCCCCCTCGGAGCGCTCAGTCGAAGAGCGCGCCCCAGGCCCACTCGACGACCGCAGCGGTCCCGGCGGCCGCAGCCAGCCCTACCGCCACCGGGGCACCGACGGTGCAGAGCACCGCCGTGCAACCCGCCGCCGCTGCTGCCTCGGCGACTGTCGCCGCCGCCGCTGCCCCGACCACGCCCGCGGCCGTCCGTGTCGCGGCCTCCTTGCCCCCGGTACCCACCAGCTGACCGTAATCGATGTCGCTCATTGTGCATCCTCCTGTTCTTACCTTGGCACCTTTGCCTGAGAGACATTCTGACACTCGCCGCCCGCGCTTTCCGTAACGACAATTTTGTGCTCAGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCCTTATTCATCAGGGCAATGTATCGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 911-97 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYE01000320.1 Acidithiobacillus caldus strain DX Contig320, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 910 37 100.0 34 ..................................... GGGATTACTCGAAGCCAATCTGGAAAGCGCGAGT 839 37 100.0 34 ..................................... GCCTTCGGGTCGAATTTCCCCTTGTAGTACGTCC 768 37 100.0 34 ..................................... GGCGGCGTCTGCGGCGTCCCATGCGGCGTCCCAT 697 37 100.0 32 ..................................... GTAACGTGTGGAGTAGGTGTAATGCAGACTTT 628 37 100.0 34 ..................................... ACGTCGGCTCGGGTGTAGTCTTTCTTGGTGTGAG 557 37 100.0 33 ..................................... TGCAGCGCCTGTGATTCCGCGTAAGTGTTGTAT 487 37 100.0 35 ..................................... ACGGCTCGAATGTAACTTTTACTGGATTCCGTGGT 415 37 100.0 33 ..................................... AATACCGCAATGATTATGGGGGCAGCAGCAACT 345 37 100.0 33 ..................................... GCTTCGAGCCCATTGCTCTCTGTCCTATGGTCA 275 37 100.0 34 ..................................... TAGCTCAATGCCAGCCGATTCTATGGCATCGGCA 204 37 100.0 34 ..................................... CCCGTTGTGTGTCGCGATGTAATAGGCAAGCTGG 133 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 12 37 100.0 34 GTTCAATACATTGCCCTGATGAATAAGGGATTAAGAC # Left flank : CCTGAGCACAAAATTGTCGTTACGGAAAGCGCGGGCGGTGGGTGTCAGAATATCCCTCAGGCAAAGGTGCCAAGGTAAGAACAGGAGGATGCACGATGAGCGATATCGATTATGGTCAGCTGGTGGGTACCGGGGGCAAGGAGGCCGCGACGCAGGTAGCTGCGGGCGTGGTTGGGGCAGCGGCGGCTGCCACCGTCACCGAGGCAGCGGTGGCGGCGGGTTGCACGGCGGTGCTCTGCACCGTCGGTGCCCCGGTGGCGGCGGGGCTGGCTGCGGCCGCCGGGACCGCTGCGGTCGTCGGCTGGGCCTGGGACGCGCTCTTCGGCTGATCGCTCCGAGGGGGCTTCCGAGCCCCCCTGGCCTGGGATGCAACGTTTTGGCACAATGCGGAATACGTATGGAGAAAACCCCATGCAAGTTCCTTGCCAATCGAGACCCGAGATTTTTTGGGAAACCCTCTCTCAATACATTGTTTTTACGGGTTCTTTTGGTGGGGGTGG # Right flank : CCCACCCAGATGTACTTTCGTATTCCCAGGTATAGTTCAATACATTGCCCTGATCCTGAATCCGTGACCGCGGCACCGGAAAACTATTTCAACGCAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAATACATTGCCCTGATGAATAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2941-777 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYE01000211.1 Acidithiobacillus caldus strain DX Contig211, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2940 29 100.0 32 ............................. GCTACGGCACGCCCACTCCGAACCGGCAGCGC 2879 29 100.0 32 ............................. AGCAGCCGGCTCCAACGGGTCGCCGGTCTCGG 2818 29 100.0 32 ............................. GGCTAATGAATGGGAGCGCGTCGAAGAGTGGC 2757 29 100.0 32 ............................. CATCCCACAGGGTATCCGGTGGCGCTGCCCGA 2696 29 100.0 32 ............................. CCGTGCAATGGATGCACGCGGAATTGACAGAG 2635 29 100.0 32 ............................. GAAGGCCAGGGTCTCGAGGTCTCCAAGGAAGG 2574 29 100.0 32 ............................. CCCGCGCCCGTGCATATCCTTAATCGGGAGAC 2513 29 100.0 32 ............................. GTCGTGGTTATCATGATATTTTCTCCTCCGTC 2452 29 100.0 32 ............................. ACTTCGAAATCAACCGTAGGCGATGCCTATGC 2391 29 100.0 32 ............................. CCACCGATGCGGAACTGGAAACCGCATGGGCC 2330 29 100.0 32 ............................. GAATGGTTTGAGGGTGACGTAGAGTTTGATAC 2269 29 100.0 32 ............................. AAATTATCAAGGATATATACTGGAATTATCCA 2208 29 100.0 32 ............................. GCAGGCCAAGGGCATCGAGGCAGGCCAAGGGC 2147 29 100.0 32 ............................. GTAGGGCTTACTGCGAGGGAGTTAGAACTCCG 2086 29 100.0 32 ............................. AAACTCCGGCACTGTTCTGGCACTACGCCACC 2025 29 100.0 32 ............................. TAGACAACATCGGCCCAATATTCCGATTTGTC 1964 29 100.0 32 ............................. CTCTCAGACCTTCACACCGTAGAGCATTATAA 1903 29 100.0 32 ............................. TCGCAGACGATGATTTTGTGCCCCGGCGCGGG 1842 29 100.0 32 ............................. ACCAGCCCCCGGCGGGCCGCCCGAATCTGCAC 1781 29 100.0 32 ............................. GCCGAGGAAGGCCCGGGTCTCGAGGTCACCAA 1720 29 100.0 32 ............................. CCAGCCGATTTTATCGCCTCACCAATGGCAGC 1659 29 100.0 32 ............................. ACTTCGCGCTGAGAGTCTGTCCGGACTTGGGG 1598 29 100.0 32 ............................. GTAAAACGGTCGGCCAGCAGGTTGTATTTAGG 1537 29 100.0 32 ............................. GCCATTACTGCAGCGGAATCCGGTCAGACTGC 1476 29 100.0 32 ............................. TCAAAAAAGAAAAGGCGCAAAGCATTATAAAA 1415 29 100.0 32 ............................. GTGATCTCGGAAAAAGTAGCGCAGGCGAAAGC 1354 29 100.0 32 ............................. TGTTGGACGAAGCCCAGAGCCGGGCCGTCGTC 1293 29 100.0 32 ............................. TGATGCAACGGTATCAGATGGCGGCGCAGAGC 1232 29 100.0 32 ............................. TCTAAGCAGAACGCGCCCCTGGATACATAGCC 1171 29 100.0 32 ............................. AAATCACAGGGCTCGAAATCCTCAGTCAGTCC 1110 29 100.0 32 ............................. TCGAACGGCAGTAGCGCATCAACAACGGATTC 1049 29 100.0 32 ............................. AGCCATGGGGCTAGGGCCGCAAGTACGCCGAA 988 29 100.0 32 ............................. TAACGGTGCAGTCTCCGGTGACTTCGGGAAGC 927 29 100.0 32 ............................. AAATCGTCACAGATCCGCCCTCACGGACCGAT 866 29 100.0 32 ............................. ATGTGCTCGGAAGCCGCTTCGTAGGTACAAAA 805 29 79.3 0 .........TT.......C..GC..C... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.4 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : GGATGCCGTTCCTCCAGCCATTCCAGAACCTAAGGGACTGGGCGACGCCGGACACAGAGGCGGCTAACCATGGCTTTGCTGGTCGTCGTGACTGAAGTCGTTCCACAGCGATTACGGGGAAGATTGGCGGTATGGCTGCTGGAGATCCGCGCCGGGGTTTATGTGGGCGACGTCTCACGTCGGGTACGGGAAATGATTTGGGAACAGTGTGAAGCGCTGAAGGAAGACGGCAATATTGTTATGGCTTGGCAGGCCAACACCGAGTCCGGGTTCGACTTCCAAACTATCGGGAAAAACCGGCGTATTCCCGTCGATCACGAAGGGTTGCGTCTAGTGAAATTCCTTCCCGTGGAGGAAGAAAGTGGATCGTGAAGTCGCTCTTTAACAATCTGAAAACAGGCTATTTTCATGGCCAACCACGCGCATCCCATGCAGGCAAGAATGCTGGTGGGAAATCGTATCCCGGTTTTCGCAAATGATATCAATCAACTATGATTGGT # Right flank : CGCTCTGGCGAGATGCTCATCCGTTACAGCCTAACGGTGGAGACGGAGAGGGCGCGGGTGATGCCCTGCCCGCCCCGGCATCTATCGGTGATGACGCTTCCGCCTGCGAGGCTTTAGCTCGATCAGTTCTTGCCTCCGGTCATATTTCCAGAGGCTGTAGGCAAACCAAATAGCCCCCACCTTCACGACGGCACCGAAACTAGCAAATCCTCAGGACAGGATGCTGACGATTTTACCGTGCGTCATGGGCCACCTACTTTGGCCTCTGAAAACAGCCGGATTTCGCTCCCGAGGATATACCCTACCACCTCAGCCCCTTAAGTCGCTTCTGGGGGTGTTTTTTGCCGTTTAGGGGGAATCGGCATCGCAGCGCTTGCGCCGCTTCCGCCGCCATTTCTCTTCCTGCTCTCGGTCGTACTTCCAGAGGCCGTAGGAGAACCACAAGGCGCCGACCGTAATCAGGACACCAAAACCGTCCAGAGCCCACATCACCTCGGCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1076-92 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYE01000340.1 Acidithiobacillus caldus strain DX Contig340, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 1075 35 100.0 32 ................................... TGAGCGGGGATGTCGAGGATTTCGAGGATACC 1008 35 100.0 32 ................................... TAGTAACACCGTCCTTGCTGCCAGGTACGAAG 941 35 100.0 32 ................................... CCCAACGGTGCCCGGGGCCACTTTCAGACGCT 874 35 100.0 34 ................................... ATGTTGCTCCTGTTGCCTGGCGTGAGCCTGGGCA 805 35 100.0 34 ................................... ATGGGCAGCATACGCTACGGCGCTGCTTCAAGCC 736 35 100.0 33 ................................... AGGTTGTGCCAATCGGTCACTTCCTCATAGTTG 668 35 100.0 33 ................................... TTTTCAGTAGTCTCGGAGTTTGTGCTTTTGCCC 600 35 100.0 32 ................................... TTGCGGGAATTTACTCCCAATCCTCGTCACGG 533 35 100.0 33 ................................... ATTTTGGAAAGCGGTATACGGAAGCGCTCATCG 465 35 100.0 33 ................................... TATTATCATGTGCTTTAGTGAAAGGCGAATAGG 397 35 100.0 33 ................................... ACTAGCCGCAGATCAGATCGAGCCGCCTGTTGA 329 35 100.0 32 ................................... CCATCGGTGCGGCGAGCGGCCTCGCGAATAAT 262 35 100.0 32 ................................... ACGATGTTCTCGCCCTCGGTCAGGGCGTTTTC 195 35 100.0 34 ................................... CAACGACTTTTGCAGCATCGGTAGCGGCGCTGGA 126 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ================================== ================== 15 35 100.0 33 GTTTTACTTACCCCGTTTCTGAAGGGGATTGAGAC # Left flank : TTTTGCTTGGCTGGGGTGAGCGAGTACAAAAAAGCGTTTACGAATGTCGGATCGATACCCCAAGTCAATGGCTGGCGCTACGAGAAAAAGTGGCCAAGCATCTGGACGTGGAAACGGATACCGTACGCTATTACAGTCTCTGCGATGCAGATCGAGTAGAAATAAGCACCGATGGCTATCAAGAATATCGTGAAGAGTCCGATTTTTACTTACTCTAAAGCAAATTTTGGTTGTTTTACAACCAGTCTCTATCGGCTTATTGTTGCTGCGGAGCAACATTCCTCATTTTATAGCGAAATGGGAATAACCCTGCAACGCATTGATTCTTATGGTAATAAGAAAATACTCGAGATTTTTCTGTCCGCCTATTGTTTTGCAAAGAGTTTTGCCTGTTTTCTAGACGGATTCCATGTAGATTTGTTCAAATTTACATATTTTTGCACCCCATGTCCGCATATGGTTCCTGGAGCCCTTGCCTGGCGGTCTTTCCAGTGGATACT # Right flank : CTTTCCCGTGATCCTCGGGGGTACGCCGCACGAGTTTTACTTACCCCGTGTCACTGGCCGGCAGAATAGCGCCACCGATGGTCGGCGTAATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACTTACCCCGTTTCTGAAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 2158-1703 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYE01000094.1 Acidithiobacillus caldus strain DX Contig094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================ ================== 2157 28 100.0 33 ............................ GGTCGGTTCTACTCGCCCGTGGGGGAAAAAACC 2096 28 100.0 33 ............................ GACTACAACCCAGATCTCCGAGTACGCATATTA 2035 28 100.0 33 ............................ ATGACCTGCTCCTAACCGTGGCGGAAATGACGG 1974 28 100.0 33 ............................ GCAAACAGCACGGGACAAGTGGATCGCCCTTTG 1913 28 100.0 33 ............................ TGAAGACCGACGGGCGGCGGCTTCCGCCCCACT 1852 28 100.0 96 ............................ TGGTCAAAAGTTCTTGGACGACCAAGCCGAGATATCTTCCCTGCGCTGGCGGGGAGAACCCCCCAGAAGAAATCGGGTTTATACTGGCTCTCGTGA 1728 26 85.7 0 ..-...........T........-...C | ========== ====== ====== ====== ============================ ================================================================================================ ================== 7 28 98.0 44 GTCGTCCCCGCGTGCGCGGGGGAGAACT # Left flank : CTTGACCAAGGACGAGGCGGAAGACTATCTCCAGCGTCTCGACGACTGGTCGGAGGCCGACAAGGAGACCACGGGCCTGAAGCACATCAACGATCGCCCCTGGGAAGAGATCGTGGCCGGTGTGGAGTGCGAATGGGGCTACCAGATCCATCGGTTTACGCCCTTCCAGTCCGGCGCGGTGCTGGCTGGTCTGCGCTACTTCGCCGGCGATCCGGTCATCGGCGCGCACAATGCGGTCGGGCGTGGTGAGCTGGCGCTGGATCTGAACGCCAGCGTCATCCGCCAGGATATCCTGAACGGACCCCAAAGCGAGGAAGCCGGCACGCTCACCCTGCGGCGCGGAGAATTCCGTGTGGATGGCCTGCTGGCCGAACATCTATCCGAATTCGACCGGCTGGCGAAAGCGGGCTTTCCGGGAATGGATTTCCATTGCCTGCCCGCGCTGGTGGAGGTGGAGTGAGTGTGGAAAATCGCATAAAAACAGAGTGTTGAGAGATAGA # Right flank : GCGGCAACCGTATCCTGAAACCAATCATTTTGTAGCTAATTATGGAGGAACTTGATGAAAAATATCATGCTGTCGCTACTGCCTGCCCTGTTTCTTTCGGTCTGCGCTGCGGAGGCTTTGGGGGCTAATGCCAACGTTGACGAAACGCCTGCGGTTACGGCTTACGCGACGAAGGTCAGCAAGATTTTGGCCCCACTCACGCAAAATGAGGAAGAAGTCGTGGAACGGCAGGTCATAAGAGTCCTCGGGCATCCTTTGCCAGCTAAAACTGGATTGTGTATGGCGAAAATCGATGTGAGACCGAATGGTTCTGTTGCCCATTTCACCATAATGCAATGCCATGGAGACGTTTTGGGCTCGGCCCTTTCACAAGCTATCGAATTGGCATCTTTGCCACCCACACCTTTTCATCACCAGGTAAGCATTTTTGTCGGTGTGGACTGCGGGGATACCATGCGTCCCATCAGTTGACTTCTGTGAGATCCACGATGGCCAGCGAC # Questionable array : NO Score: 5.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.95, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGCGCGGGGGAGAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 3732-3219 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZYE01000094.1 Acidithiobacillus caldus strain DX Contig094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3731 28 100.0 33 ............................ TTCTGGACGTTCAAGAATGCAGCATCGGCTTTA 3670 28 100.0 33 ............................ CCGGCAACGGCCTACCCACGCAATATCGTCGAT 3609 28 100.0 33 ............................ TTTCATCAATGCCTGGGCAGGTGCCGCGGCGGC 3548 28 96.4 33 ...........................A GGGCATACAGGTCGCGAGATTCAGCGACAGGAA 3487 27 78.6 33 ..-.....T....CG........G..T. TTCGTCATGCACAAAGTTGACCACCATGTCTTG 3427 28 89.3 33 ....C........CG............. CGAGGTGTTTGAGGCGCTCAAGGGCGGTGTCGT 3366 28 85.7 31 ............CCG..........C.. TTGCAATCTGCATTTCGCATTTGCCCGCGGT 3307 28 85.7 33 ...A.........AG........G.... CGATTGCGCCGCGACGTGCAATCCCAGCTCTTT 3246 28 75.0 0 .G...........CG.......G.TT.G | ========== ====== ====== ====== ============================ ================================= ================== 9 28 90.1 33 GTCGTCCCCGCGTGTGCGGGGGAAAACC # Left flank : CTTCGGTGGACGAGCGGGATTTCCTGTTCGCGCCGTACAGGGACGCCATCGTGTTCCGGTCCCGCTCGGAGCCCTTGCCGGCCACGCCGGAGGTCTGGCGGATGCGGTCCCTGCTGGCCCCGGTGATGCGCCGTGAGCATCGGGAGCGGGTCGTGAAGCCCAGGGAATTTCGCGGGTGGCTCGCGTCCCTGCTGGAGCGCCACGGCTGGGTCCTACGCTCCATCGAGAAGGTCGAGTCGATGGAGATGACCATCCGTCACGGTCGACGTCTCACGGTCGTCGATACGGTGTTCACCGCGCAGGTGGTGGATCGGGAAAACGCCGACCAGTCCTACCGGAGCGGCATCGGACGGTACAAGGCTTTTGGGTGCGGGATGCTGATTCCGCAGGGTTGATCGCGGCTTTCCGCCGATCGGCGGAAAGCGAACCGTTCTTTCAAAATCGAGCGTGCGTTTGTCCGATAGGATTTTCCTAACGGAAACCGTGTGTTGCGCAATAGA # Right flank : CACCGAAATCGGTGTTTTTTGTTCGTTTGATAAGAGGAGACACGATATGTCGATGTTGGAAACTTTGGATGTTTCGGGAAAACTGCTGGCCGTTTCGCCTATCGCGGTGTCGCCGCCCGGAGCGGCGTTTTCGTCGGACGACAAGGGGGCACCGCAGCGGCTTCCTTCGGTCGGCAAGAACCGCTACCTGCCGGCATCCACCTTTCGTCACGTCCTGCGCTACGGAGCCATACGGGTGGTGCAGGAAGCCCTGAAGGCGCAGGGGAAAAGCTTGAGCCTGGACGCCCTGCTCATGCTGGACAAAGGGTTCTTTGCGCAGCGGAAAAAGGACAAGGTAACCCTCCCAGGCCGGAGTAACGGCAAAATGAAAGCCAAGGACGTCCTACGCATGGAACAGGAAGTGCGGGAAAAGAACCCGCTGCTGGGTCTCTTTGGGGTGTGGACCATCCCGTCCATGCTGCGGGTGCGCAACGCTTTCCCGCTGCCCAACGCGCAGGGGC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGTGTGCGGGGGAAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //