Array 1 2959315-2961909 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCBC010000001.1 Kineosphaera limosa strain DSM 14548 Ga0104570_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 2959315 28 100.0 33 ............................ CACCACGATGCCCCGAATGCGAGGTTGCACCAC 2959376 28 100.0 33 ............................ CTTGTGCGCCGACCCAGGCCTGGAGCGCCTGAC 2959437 28 100.0 33 ............................ CGCCGACATGTCTCCGCCGAGCAGCCAGAACTC 2959498 28 100.0 33 ............................ CGGTGCTCCGAGCAGGCCAGACGGATCTCGACG 2959559 28 100.0 33 ............................ GTCGCTGGTGGCGGCATGGCTGGGATGCGTGCG 2959620 28 100.0 33 ............................ GGAACGGGTGCGGGCCGAACTCGCCGGGCTCGA 2959681 28 100.0 34 ............................ CTGCATCGGGCCCTTCGCGCCGGCCGACGAGGCC 2959743 28 100.0 33 ............................ CGGTTCCCCGGCTACGCGGAAGCGCCGGCACGG 2959804 28 100.0 33 ............................ CAGGCCGCTCGGTGCCGGCCGAAACTACCGGAG 2959865 28 100.0 33 ............................ CCAGTGGGTGTCGTCGGGGGTGACGGTCAGCCA 2959926 28 100.0 33 ............................ CGGTCTTGTCCACGGCCCGGGTGCCCTTGGTGA 2959987 28 100.0 33 ............................ CGATGGCCTGCGCCGCGGTCGCGACGTTCACTG 2960048 28 100.0 34 ............................ CACGATCCTCCGGCCCAACCCACTGGTCCCCGAA 2960110 28 100.0 33 ............................ CGACGGTGACTCCATCACTACCAGCCGAGCCGA 2960171 28 100.0 33 ............................ CGCCGAGGCCAAGGCCAAGCAGCAGGAGCTGCA 2960232 28 100.0 33 ............................ ACGTGCAGCTGGACGGCAAGCAGCTCGACGCGC 2960293 28 100.0 33 ............................ CTCGTCGGCCGCTATCACGCATGGGATGGCGCC 2960354 28 100.0 33 ............................ CTTGTCAGGGTTGGCCCGGTAGTACTTGCGCAT 2960415 28 100.0 33 ............................ TCACCGCATCCTTGGCCGACCAGTCGGCGAGCG 2960476 28 100.0 33 ............................ GCTCATGCTCGTGACGCGGCGGCCCTTGATGAG 2960537 28 100.0 33 ............................ TGCCTATCCAGGCAGTGACGATGCGGAACGCGC 2960598 28 100.0 33 ............................ CCGGACCTTGTACGCGACCCCCATCGACGTGGC 2960659 28 100.0 33 ............................ GGCGTCATGAGCGGCGTGGTGGCGACCCCTACA 2960720 28 100.0 33 ............................ CGCCCGTTCAGTCTCCCATCCCGCACCCTGGCA 2960781 28 100.0 33 ............................ CCCCCGCCAATGACCGGCCTGCGGTGGGGGTGC 2960842 28 100.0 33 ............................ CGAAAACGGACAACCGTCCCGAGAACCTCATGC 2960903 28 100.0 33 ............................ CCGCACCATGCAGAAGAACCTGTCGCACAAGAC 2960964 28 100.0 33 ............................ CGCCGACACCGGCGTCAAGGGCTTCGTCGGCGA 2961025 28 100.0 33 ............................ CTCGCGGTTGGACTCCATGCCGAGCATCGAGCG 2961086 28 100.0 33 ............................ CCGCAAGCGCATCTCGATCCACACGACGATCCT 2961147 28 100.0 33 ............................ CTCGCCCTGCGCCGTGATCGACCCCGCGACGCT 2961208 28 100.0 33 ............................ GGTCGACGTGACCGCCGACGTGGTCCACCACCT 2961269 28 100.0 33 ............................ CCCCGCCGCCGTCACGGACTACATGCTGCGCGA 2961330 28 100.0 33 ............................ CCGGCGCATCGACGACGAGAGGGGCAGCTGATG 2961391 28 100.0 33 ............................ CGCGATGGCCCCGGCCCAGCACGCCCCCAAGGT 2961452 28 100.0 33 ............................ CGACCGTGCGAGTGCGTCCTTGTCCGGCTCGGG 2961513 28 100.0 35 ............................ CCTCGGGGGCGGGGCGGCCCAGCGTGACCGCGAGT 2961576 28 100.0 33 ............................ GGTGACTGTGCCCTCCCACTGGATGGACGACAA 2961637 28 100.0 33 ............................ CAAGATGGGGGGCCCCGCACCCCGGACGCGCTG 2961698 28 100.0 33 ............................ CCACCCGCAACCCCGAGCGTCGGACAACGTCTG 2961759 28 100.0 34 ............................ TACCCAACCCCAGGAAGGACGACCACCAATGAGC 2961821 28 100.0 33 ............................ GTCCACGGATGCAGTGTTGCGTGGACGTGACGC 2961882 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 43 28 100.0 33 GTGCTCCCCGCGCTCGCGGGGATGAGCC # Left flank : CGGAGGACGCGGGCGACGACTGGGATGTCGTCGAGCTGTGGGACGGCGCGTCGCGACGCGTCGCCGGAGGCGTCTCGTACGGGGATGAGGTCGACGTGCCGTGGTAGTGCTTGTCGTCACCGCCTGCCCCTCGGGGCTGCGAGGCTATCTAACCCGATGGCTCCTCGAGATCAGCCATGGCGTGTTCGTTGGCCACGTCACGACTCGGGTGCGGGAGCTGTTGTGGCGGGGAAGTCTGCGCGAACGCCAAAGACGGGCGCGCGCTTTTGGTGTACAGCGTTCGTGGGGAGCAGCGCCTCGAGTTCAAGGTCCACCGGCACGACTGGCTACCCACCGACTTCGACGGCATCCAGCTCATGATGCGGCCCACGGAACCCACCTCCGAAGCCGGCGGCATGAGACACGGCTGGAGTAAGGCCAGCCGCTACCGTCGAGCGGCACGCACTTCGAAACCGAATCAACAGTGACCGCTCGCGCTGTATTCTTGCTGTTCAGCAAGT # Right flank : CCTCGACACGGCACTTGCGTCGATGGTCGCGAGCGTGCTTGTCAATGGCCGTGTGGATGTCCCCGGTTTTGGCCAGGTGGAAGTCCCCACTCTCTGCGGGGTGGGTCACTGGTTCAGTAGGTCACCTCCTGCGCGTTGGCGGGCTTGGCGCATGCGGTAGGACTGGCCGTTGGTGATCACGGTGGTGGCGTGGTGTAGCAGGCGGTCGAGCATCGAGACGGCGGTGGTGTGTTCGGGCAGGAATCTGCCCCAGTCCTCGAAGGAGTGGTGCGAGGCCACGCCGAGGGATCGTCGTTCGTAGGCGGCGGCGACGAACCGGAAGAGCAGTTGGGCGCCGGTGTCGTCCAGGGGGGCAAAGCCCACCTCGTCGACCAGGACGAGGTCGTTGCGTAGCAGCGCCTCGATGACCTTGCCGACGGTGTTGTCGGCTAGGCCGCGGTAGAGCGTCTCGACGAGGTCGGCCGCAGTCAGGTACCGCACTCGTTGGCCGGCCAGGACGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2964485-2969576 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACCBC010000001.1 Kineosphaera limosa strain DSM 14548 Ga0104570_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2964485 28 100.0 33 ............................ CACCCCGGGGGTCCCGTCGTCGCTGCGGCAATG 2964546 28 100.0 33 ............................ CGTGCCTCCTGTCACCACGCGGTGGACGCCTCA 2964607 28 100.0 33 ............................ CTGGAAGTAGCCGCCGGTGCCTTGTGTGTGCGC 2964668 28 100.0 33 ............................ CGCGGTCCACGCCCCGGCGAACCGGGGTAATCG 2964729 28 100.0 33 ............................ CGCCGAGATCGTCGAAGAGGGCGACCTGAAGCC 2964790 28 100.0 33 ............................ GCAATCTCGCCAGGGGGAGGATTGGGGTCGGGG 2964851 28 100.0 33 ............................ GCGTGGCTCGCGTCTGAGGCTGAGCCTGGCGCG 2964912 28 100.0 33 ............................ CGGGGTCACATTCGCGAATGACGTCTGCCGGAT 2964973 28 100.0 33 ............................ TGCCCTGCGATCCTCGCGTGTCGTCGTGAGCAT 2965034 28 100.0 33 ............................ CAGCGCCCGCGACCCCCGCGGAGCGTCTGGGCG 2965095 28 100.0 33 ............................ CAGATACTGGCCGCCGCAGGATCGGGCCATATC 2965156 28 100.0 34 ............................ TTGATTTTCACTTCCATCGGCAAGCGTGATTGTG 2965218 28 100.0 33 ............................ CCGACCATGACCACCGACGTCGCCACCATTCGC 2965279 28 100.0 33 ............................ TTGGTCGACTGGACGCAGGATCGCACCCTGGCC 2965340 28 100.0 33 ............................ CGGATGGCTCGCCGAACGCCTATTCCAACGGCT 2965401 28 100.0 33 ............................ CCTCCCAGGCAACCGCCGGCCAGCTCCCAGCTT 2965462 28 100.0 33 ............................ GCGGCGCGAAGCGTCGCAGGATCGCACAGTGGG 2965523 28 100.0 33 ............................ GTGGCGTACCGCCCTGAGCGCCCGACGCCGGCG 2965584 28 100.0 33 ............................ CGCCGACCAGTCACCGCCCACGATCGGCAACCT 2965645 28 100.0 33 ............................ GTCGTTTGTTGAAGCCGACTGGGCGGTCCTCGA 2965706 28 96.4 33 ..........................T. CACCCTCACTGCGGGCCACCATCTCCGGGGTGT 2965767 28 100.0 33 ............................ CGCGCAGACCGCCGCGACCTCCTGGAACGCCTG 2965828 28 100.0 33 ............................ CGGTCCGGACCGCCGGTTCCCCGCGTCGTGGGG 2965889 28 100.0 33 ............................ CGGGTGGCTGATCACGTCCATGCGCTGTGGCTC 2965950 28 100.0 33 ............................ CGGTCCGGACCGCCGGTTCCCCGCGTCGTGGGG 2966011 28 100.0 33 ............................ CGCGCCGTGGACCAGGACCAGGGGGTCCATGTC 2966072 28 100.0 33 ............................ CTCCCTCCCGGTGTTGTTCGGTCTCGAGGTTGG 2966133 28 100.0 33 ............................ CCGCTGGTTGTCGACGGCGCGTACGGGCCAGCG 2966194 28 100.0 33 ............................ CCGCCGGCCAGCTCCCAGCTTCAGCCCCCAGGA 2966255 28 100.0 33 ............................ CACCGACAGTGCGACCCCGGCAGCGGCGAGCGC 2966316 28 100.0 33 ............................ CGAGTGCCCCTGTGCCCACATCTACGGCGGCGC 2966377 28 100.0 33 ............................ CTGGGGGTGACCGTGGACGCTGAGGTTGAGATC 2966438 28 100.0 33 ............................ CGCGTCCCGCTGCTGCCGCAACGCCTTGTCGGG 2966499 28 100.0 33 ............................ TGGTTGAGGGACACCCTTTTCCATTTCGTCTCC 2966560 28 100.0 33 ............................ CGACGCCAATGCGAAGTCCGGGCTGTCCGTGTC 2966621 28 100.0 33 ............................ TGTCGAAAAGGGCAGCAAGAATGGCGCCCGTCT 2966682 28 96.4 33 .....................G...... CTGGGTCATGGCGGACGCGGCGGCCTCAGCAGC 2966743 28 100.0 33 ............................ GTTGGCGCGGGAAGCGGCCGCCGACATGCTTGG 2966804 28 100.0 33 ............................ CTCGGCCGTGACGTCCGGTGGGAAGTCCCTCGA 2966865 28 100.0 33 ............................ CAATGCGGCGACCACCGAGGGCGAGATCGTCTC 2966926 28 100.0 33 ............................ CCGCACAGACGCCGCCGATCACCTGAGCCGCAT 2966987 28 100.0 33 ............................ TTTCCTTTCAGGTCACCCGAATTGGTGCGGGCA 2967048 28 100.0 33 ............................ GGCCGCCATCGACTGGGACACGGCGATGACCGG 2967109 28 100.0 33 ............................ CAAAGCCGTGAACTATTCCGGCCAACCACCACC 2967170 28 100.0 33 ............................ CGCCACCTTCACCACCCGCACCGACGCCATCAC 2967231 28 100.0 33 ............................ GGCCATGTTGAACAGGCTTTCCGCGCCCGGCAG 2967292 28 100.0 33 ............................ CCGGATGCCCTGCGGTGCCGCGGACGCGGCATT 2967353 28 100.0 33 ............................ GGCCATGTTGAACAGGCTTTCCGCGCCCGGCAG 2967414 28 100.0 33 ............................ GGTCACGTCTACCCGCTCTGAGAATTGCCCCAG 2967475 28 100.0 33 ............................ CCCGCGCTATGGCGATTCCGGGTAAGCGCAAAG 2967536 28 100.0 33 ............................ CTGCTGACTGACGACCCGCCCTGCCAGGGATGC 2967597 28 100.0 33 ............................ CCGCCGTCGACGCCGATCGTGAATTGACTTTCA 2967658 28 100.0 33 ............................ ATGGGGCGCGACTGGCGACATCGACGCGAGCGA 2967719 28 100.0 33 ............................ CGCCACCCGCGTCGTGTGCACCACACCCGTGAG 2967780 28 100.0 33 ............................ GTACCCGCTTTCGTCGCCGACGATATCGGCCCA 2967841 28 100.0 33 ............................ CGCACTCATGTCGCCGCCGAGGAGCCAGAACTC 2967902 28 100.0 33 ............................ CCTCGCCGGTGCCGGCTCGCAGGCCGCCGAGGA 2967963 28 100.0 33 ............................ CGGCCGTGCGCCAGTACGAGGCCTTGAGCTCGC 2968024 28 100.0 33 ............................ CTCGGGGAGCGCTGCGGCGATCACCTGGCCGAT 2968085 28 100.0 33 ............................ CCAGGAGGTCCAGTGGGCCGACGAGGACTACCA 2968146 28 100.0 33 ............................ GTCCGGCACCCAGCCGATCCCGTCGCGTCCCTC 2968207 28 100.0 33 ............................ CCGTCCTTCACGATCAACCCACCGGGCAAGACG 2968268 28 100.0 33 ............................ CGTGTGCGTCGACGACGACCTGCTGCGGAGCTA 2968329 28 100.0 33 ............................ TTCAGCGGCACGCTGCCGCGTGGTCAATGGGAT 2968390 28 100.0 33 ............................ CGACGACGTACACGTACGCCAGCGCCACCGGCG 2968451 28 100.0 33 ............................ GTACCCGCTTTCGTCGCCGACGATATCGGCCCA 2968512 28 100.0 33 ............................ CATCGACAGACCGTCCAAGGCGCGATTGGGTCG 2968573 28 100.0 33 ............................ TGGGTGCCGGAGGAGATTTACACGTATCCCGCG 2968634 28 100.0 33 ............................ CTCGGTGCCGTGGTCGAGCTCAAGACATGACGC 2968695 28 100.0 33 ............................ CCGCCATCGACTGAGAAAATGGCCGCCTGATTG 2968756 28 100.0 33 ............................ CAGGCGGCGGTACCGGCGACGGAGCGACCGGCC 2968817 28 100.0 33 ............................ GCGGTACTGGTTTCACTCGTCAGAGTTCAGTGA 2968878 28 100.0 33 ............................ CGACGCCGGGGTCTTGTGGTGGGTGTCGGAGTT 2968939 28 100.0 33 ............................ CCGCCCGGACGATGTCCCAGTAGCGTTCCCGGA 2969000 28 100.0 33 ............................ CGGGAAACTCTCGGCCACCGACAAGCGCGCCGC 2969061 28 100.0 33 ............................ CTTCGACGCGGAAGTTCTCGCCGCGCTGCTCCG 2969122 28 100.0 33 ............................ CCAGTCCGGGATCGTGGCCCGGCAGACCGGCCT 2969183 28 100.0 33 ............................ CTTCACCACGTAGCCAACAGCTACTTTCAACGA 2969244 28 100.0 33 ............................ CGCCGACAATGACCGGAACGGCATCTGGATGCC 2969305 28 100.0 33 ............................ GGGGCAGAAGCCCCAGCTGCACAACGTCTCCCC 2969366 28 100.0 33 ............................ CCTCCCACCCGTGCTGGCGGGCACGCAGACCGC 2969427 28 100.0 33 ............................ CGTCTTCCTCGCCGACATGCTCGGCGTCAGCGA 2969488 28 100.0 33 ............................ GGCTGGACGGGACTATGGGCTGCCGTGGCAGGC 2969549 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 84 28 99.9 33 GTGCTCCCCGCGCTCGCGGGGATGAGCC # Left flank : CGCCCATGCCTGGCCCGCCAGGCCTTCTTCTCCTGTGCCACCAGACGGCGGAAGTTCCGGTCCGAGCCGGTGTACCCAGCCGCGCGGGCCGTGGGCAGCAACCGTTTCGCGCTGATCCGCCCCTGAGCGGTCTTGACGCCGGCGGCGACGACATCGCGCACGGACTCGTAGTTCGCCGGACGGGGCGTCTTACCCGGACGGGCTTGACCCGCGATGTGGCGCTGCACGACGTTCTTGACGGTCTTGTGGGTGGTGCCGCAGATGTCCGCGGCACCGCGGTAAGTCCCCACCAAGTTGTAGGCGGTGATGATGTCCAACTCTTCCCTCATGTTCTTCAATGGAGCTCCCTGGGCGGTGCGGTGACTGGCTAGACACCGCCACCGTTCACCGTCCAGGGGCTCAACTCACGGACGACACGAGCAGAGAGTGGGGACTTTCACCTGGCCACCAGCGGGGACCCCACCTGGCCACCACTGGGGACTTTGCCACGGCCATGGACA # Right flank : CCCGCTGCGGGTCGTGTCCTAGTCCTCCAGGCGGCCCTTGAAATAGCTCTCGACCGGCCATCGTCACGAAGACTCTGTAGTGATCACCCGACAATGAGTTTGCCACCTGCCACCGACGTGACAGAGGCTGAGGCGTGAGCATCGAGATCGAGACTCTGACGCCGGACGACGGGCCCTGGCTGGCCGACACGTTGGACTACGCGTTCGTGGCGGACCCGACGCGGCCGGCGCGGGCGCATCTGTTGGAGCAGGTGGACTGGCGGCGGGCGTTCGGGGCGACGCGGGACGGTCAGCGCGCCGGCTGCTTCTTGCTGCTCGACCTGCAGCTTGCGGTGCCCGGGCCGCTGGGGACCGTTCGCAGCCACCACCTCGACGGCGTCAGCTGGGTCGTCGTCAGTCCGGACCACCGACGTCAAGGTGTGCTGGGCGCGATGATGCGTCATCACCTCGAGCAGGCCCGGGAGCGCGGTGTCGCCTGGAGCGGATTGCACGCCAGCGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //