Array 1 35038-34806 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGA01000056.1 Nocardia higoensis NBRC 100133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 35037 31 100.0 34 ............................... AGTTGGTGCTGCGCGGTGCAGGCGGGGCGGGTAG 34972 31 100.0 37 ............................... CAATACCGCTCATCGAGTTCGATGCCGATAGCACGCA 34904 31 100.0 37 ............................... TGCTGGCGCAGGAAGACGAGATCGAGGTCGAGCCGTG 34836 31 93.5 0 A......................A....... | ========== ====== ====== ====== =============================== ===================================== ================== 4 31 98.4 36 TGTCCTCATCGCCCCTACGAGGGTTGGCAAC # Left flank : AGGTCCTTGGCGTAGCCGAGGAAGTCGCGGCGCGAG # Right flank : GTGCCGCCAAAAACGACGGTGCCGCTGAATATGGTGCCTCGAACACCGCCCGCAGCGTGCTCGCCTGCGCTTTCGCCGTCCGCTCCGGACTGCGCTGAGCCAGCGCCGCGTAGAGCGCGTCCACCACCGCGTGATACACGCACCTGCTGGTCATGGCCTCCAGCCGGTATCGCGGGCTGAGTCGAAGTACATGGCCCGCTGTGTCCGTGTCGAAACCGACATCAGCGTTTCGGTGAGATCTTGCCCGCAAAGGTTTGGTTCGCGATCTTTCCGTTCTGGATGATGAAGGTGTCGGCGGCAACCTCGAAGCGATGGTCTGCAGTTTCGGCTGTCCACACTACGTAGGCGATGTCACCGGAGACCTCTTGCCGGAGTAACTCGTAGGACATTCCGGGTTTCGCGAACTCCTCGAACAGCTCTGTGAAGAATCGCCGGAGGGCCGCTGAGCCGCGTAGCACGCCATCGGGTGTGAACAAGGTCGCGTCGTCGCTGTAGTCGGC # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCTCATCGCCCCTACGAGGGTTGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 341-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGA01000172.1 Nocardia higoensis NBRC 100133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 340 30 100.0 36 .............................. ACGCAAAGGGACTGAGCCGCCTACGGACCAACTAGG 274 30 100.0 34 .............................. CGGTCTGATTGGCTTGCACGACACCGGTAGTCGA 210 30 100.0 40 .............................. ACAGGCACGCGGCCACCGAATCCTTGCCCCAGCCCTTCAG 140 30 100.0 38 .............................. TACTTCGTTTCCTCGAGACCGAGGATCGTCACGGCCCG 72 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 5 30 100.0 37 GTCCTCATCGCCCCTACGAGGGATCGCAAC # Left flank : CACCTCTCCATCGGCCTGGGCATCGCCGCGGCCCACCACGGACACCGGGTGTTGTTCGCGACCGCGGTCGAGTGGGTCACCCGCCTGCAAACCGCTCACCAGCAAGGACGCCTCGCCGCCGAGCTGGCCAAGCTCCGCCGCTACGGGCTGTTGATCGTCGACGAAGTCGGCTACATCCCGTTCGAACAAGACGCCGCGAACTTGTTCTTCCAACTCGTTTCCAGCCGCTACGAACATGCCTCGCTGGTCTTGACCTCGAACCTGCCGTTCTCACGCTGGGGAGACGTCTTCAGCGACCACGTCGTCGCAGCAGCGATGATCGACCGCATCGTCCACCACGCCGACGTGTTGACCCTCAAGGGCAACAGTTACCGACTCCGCAACACCGAAATCGACACACTGCCCTCCATGCGGGGCGACAACCAGGCAGACTGAACAACCATCAAGTGGCCCGATTTTCGAAGAGCGCCACCGGCCGGTTTTCGAAGAGCGTCGACACC # Right flank : CTGGATGGTGGCGAGGTAGCCGGCGACTTGGAGGACGGGGTCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.20,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 42-409 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGA01000164.1 Nocardia higoensis NBRC 100133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 42 30 100.0 37 .............................. ACGGTCAGCCGCCCGTCGACTTCACCTACCGCAGCCT 109 30 100.0 37 .............................. CTGCCGAGGTAGCCGTCCTGGTCGCACATCCCGCAGG 176 30 100.0 39 .............................. GTGATCGCTCCGCGATGATCGCGGCCGTGAATCAGGCGC 245 30 100.0 38 .............................. CTGGCGCCGAGACCGGACTCCTCGAGCCGATCGGCCAG 313 30 96.7 37 .................C............ AATCCCGTCCACTCATGCGCTCGTACCATGCCCCTGC 380 30 86.7 0 ...............G......T.A....A | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 97.2 38 GTCCTCATCGCCCCTACGAGGGATCGCAAC # Left flank : ACGGCGAGATGTAATCCATGAACTTCGGGCCGAACCACACAG # Right flank : ATACCGACCCACGCTGGCCCCCTCACACCCACGGCTGCGCAGCGAACCGGATTGGTATCGACCGACGGTAGGGTCGAATCGAGTGCTGCCGTTACGGATACATCCCAACCAGGACCGAGGAAGACACGCAGGCGGCATGGACTGGAAGCAGGCCCGCCTGTCACCTACTCGCGCTGTCACATCCCCCGGTGCATGAGCCAGCGAACTCCCATATGCACGGGAATTGCCTCCGTACACAAGATTCCGATGCGCCGCAGCCATATGATCGATCGCTTCTGCATGTCGGTGGCTTGCATTACGGTCTGCCGCAGTCGCATGACGAGGGGATCGGAGGGGCAATGAGATTGCGGATCGCGGTGTCGACGTCGGCACGAGAAATACCGTGGGACAAAGTACTCGAACCAGGCCGGGCGGTCTGCTATCGGCTTCTGAACGAGTCCGCTCCGGCGTTGGCGGAGCGCCTGCACGAGCGGGGCTGGGGCGAGTACGGAATGGTGCCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 8406-8637 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGA01000164.1 Nocardia higoensis NBRC 100133, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 8406 30 100.0 38 .............................. GTGCCGAGCAGGTCCGCAAGGCCGCCGATCACCTGGGT 8474 30 100.0 38 .............................. ATGGTGACTATCTCGACGTAGCCGACCGGTGCGCGGCC 8542 30 100.0 36 .............................. CGCTGCGTCGTCTCCGGTCCTCCACCATCCGGTCCA 8608 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 100.0 38 GTCCTCATCGCCCCTACGAGGGTTGGCAAC # Left flank : GCCGAAGGGACATTCCGACGCAGCGCCTGGGAAGTACTCGACACCCAACTACCGAGCTGGCTGCAACTGCACGGCCGCAGCCGCCGCCCGCCTCGCAATGCGGGCAACGCTTTCATCAGCTACGTCAACGGCATCGTCTACACACGCGCACTCACCGCCATTCGTCTCACCCCGTTACACAGCGGCATCGCGTTTCTCCACGCCAGCATGCAACGCCAACGCCACTCCTTGGCCCTCGACCTCGCCGAAGTGTTCAAACCGGTTTTCGCGGAACGACTCCTGCTGCGCGGCTACGACAGCGTCCTGGTGTACACGTATCCGCCCGGCGCAACCCCACAACGCGAATCCTGGGGCACCGCCCAACCCGCACCGTCGACCGTCATCTAACTTCAAGATCATTGCAGCGACACGCCGAAGAATTTCGCACTACCGGAGGATCGCTGCAGTGCAGCCCGGAAATTACGCCAAGGCGAAGCTTTCACCTGCGGCTTTACCTTGGG # Right flank : GCCAATATCTGTCGGCTTGTCCCTACTCGTACGGCGTCCTC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGTTGGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 65286-64647 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGA01000181.1 Nocardia higoensis NBRC 100133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 65285 29 100.0 32 ............................. CGGGCGGCTGCACTATCGACATTAAACGCTGG 65224 29 96.6 32 ............................G GTGACGATGCGGCCATGGTCCAGCAGGACGAG 65163 29 100.0 32 ............................. ACGTCCCAAGGGAAGTTCGGGCCGACGTCCGT 65102 29 100.0 32 ............................. ACCTGGAAACCCGGCTGACCGTGCTTGCGGTA 65041 29 100.0 32 ............................. GGTAGCGGCAGCCTCGCACCTGGTAGCGGCCC 64980 29 100.0 32 ............................. GGTGGGGGTATGTGGCGGTACATGCCAGCCTG 64919 29 100.0 32 ............................. AGTCGGTGAGCCGTGCCGAAATCGTGCGCGCT 64858 29 100.0 32 ............................. GACAGCACCAGATCATGCAGCAGCGGTCCGAC 64797 29 100.0 32 ............................. GTCGGGGGTGAGGAGAGTGTTAGCCATGTTTG 64736 29 96.6 32 ..............T.............. TGTTCATGCTCATAGGAGCAGGAGATCGTCAG 64675 29 89.7 0 ......................A...TT. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.4 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GAGCGGGAGCTGGCACTGGCCCTCGACGGTTACGGAACGGTCCTCGGTGAGGTTGCCGAAACCCTGGAGCCACATCGGCTCGCCGGCTACCTCTACGAACTTGCCCGGACCTACACGAGCTTCTACGACTCTTGTCCCGTCATCGCGGCCGACGAACCGATCCGCTCGAACAGAATGGCACTGTGCCAGTTGACCGCCCGTACTCTCGAGCTCGGGCTGGGGCAGTTGGGAATCGCCGCACCGCAACGGATGTGATCTTTCGCCCGCAGTCGGCTGCTGGTGGCAATCCGACATGCCGCGGTGGTGAGAATGATTGCGCGACGACGCCCACAGCATTCGTATCCAGCTGACTGCGCCAAGAAGCCCCGACGTGGCGGTACACGACTCGACCATTGGGCAGCTGCCGCTACCATCGTGTAGTGCAGCGCAAGCCACGGAACGCCCTGACGAAAGTGAATGAGAATCGCTACAAGTTGTTGTAAACCTGCAGGTCAACAAGT # Right flank : GTGATCTTCGATAGCCACCGTGCAATCGCCGCCCTTGGCGTACAGGCAGAGTGGAGCCTGGTGACTGGCGAGGACGCGCTGTCCGCATGCCCTGGAACACCAGTCGGGGGTCCTTCTGAGCCGGTCCGGGGGTTCCTGCTGGCGGGATCGATAGTAGCGGTTCGATAACCGCCCATAGTTCATCGTCCACGATCCAGGGTGCTGCCACAGCGAAACATCCTGTACTACAACAGCGTTCGTCGCCACCCGACAGATCCTGTTAGGAGCTCTATGCCGGGATGAGCCCCGCTGTGGGTTGTGAATCATCTCGACTGCAATCAAAGACTGGTGCATGACAGGGAATTTGATAACGCGGCCTCAGCCGAGATAGGGAATGGAGCGATTTTCGGTGTGGTGTTGTAAGCGGAGCCGAACGGTTTCGTGTACGGGCAAGGTTTCGAGTTCGTCAAGTCGCAGAAACCTTACTTCCGTCGACTCATCACTGACTGCGATTCGACCAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 73517-73365 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGA01000181.1 Nocardia higoensis NBRC 100133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 73516 30 100.0 31 .............................. CGTTGACGAACCGCACGAGGTGCATGCCGGT 73455 30 100.0 31 .............................. TCGAGGATCAGCTGAAGTCCACTGTCGGTGA 73394 30 80.0 0 .....................TGAGC...A | ========== ====== ====== ====== ============================== =============================== ================== 3 30 93.3 32 GTGCTCCCCGCGCACGCGGGGATGAGCCCG # Left flank : TCGAATGCCGCTTCGGCGTCCGGGC # Right flank : ATGCCCATCGGGTTCACCTGGATTCGACGAGATCGCGAAAAACATCCAGGCGTGACATGGCCCGAAGCCGTGACAGTCCCCGTGCCGTCTGCTCGAATGGTGACAGACCGCGAATCCCAACGGTCGCAGGCCAGCTGGGGGCAGGAGCCGATCGTGGACGCGACGCAATCCCACGGATGGCTGCGCCGGGACAGCGACGCCGCGGGTGCGCGGCTGGTGGGCCAAGTGGTCCGTGAGTACCGGCTGGCCGCGGGGGCGAACCAGGTGGCCGTGGCCGAGGCCATGGGGATCACCCAGCAATTCCTCAGCCAGGTGGAGAAAGGGACTCGCAAGGCGACCTTGGAGCAACGGCAGGGGTTCGCCCGGGTCTTGGGGATTCCTCCTGAAGAACTCGGCATCGCCCATGGTAGTGCTCACGGACGTGCGACCACCGGCATCAGCGCGCCGTCAGTGGCGGTCAGCCGTGGTCGGTGGCGTGTCCAACGGCATTGGCTCAACAG # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 219-8 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGA01000108.1 Nocardia higoensis NBRC 100133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 218 28 100.0 33 ............................ CACGGCCCGCGTCGACCTCGGTGTCTGGGCGGC 157 28 100.0 33 ............................ CATACCGATTGCCTGAAAGGTGCCGGACATTTT 96 28 100.0 33 ............................ CGGTCTACTTTGTCGCGCCCGCGACCGAAGACA 35 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GTTCCGGGCGTCCGCTTCCTCGATCGGCTA # Right flank : CCGTTCCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 306-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGA01000110.1 Nocardia higoensis NBRC 100133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 305 29 100.0 32 ............................. ACCAGGCCAGCAAACCCAACCAGGCCGCCCAA 244 29 100.0 32 ............................. CTCGACCCAATCGCGATGGCTGAGCACCATGC 183 29 100.0 32 ............................. CGGCGGCGGTGCGGGCGGGCTCGTGGCCGGGA 122 29 100.0 32 ............................. GCGCACCACGTCAGCGCCAATACGATCCACAG 61 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GGGACACCGACATCGTCGAGCTCTGGGATCGCAAAGGCAATGTCGCAGGCGGTATCTCCTACAGCGACGAAGAAGAAGTGCCGTGGTAGTGCTCGTCCTCAGCGCCTGCCCCGCAGGCCTGCGCGGCCACCTGACCCGATGGTTCCTCGAGATCAGTCCCGGCGTCTTCGTCGGAATTGCCAGTGCCCGTGTACGTGAGCTTGCCTGGGACCGGGTTGTCGAACTCTGTAAAGACGGCCGCGCCATCATGATCCACAGCACCCGAGGCGAACAACGACTCGCTTTCAAAGTGCACCGCCACGACTGGCAACCCGTCGACTTCGACGGAATCCACCTCATGCGCCGCCCCCACACCGCCGACGTGAAGGCCGGCGGCGCACGAGCTGGGTGGAGCAAAGCCAGCCGCTATCATCGTGCTGCGCGGCGGAAGCCTGCGTCGCAGTCCGACGAAAGTGAATGAAAAACAGCCAAACTCGTTGCAAACATGCAGGTCAACAAGT # Right flank : CCGCGATCGGCGCGGGCACATCGAGTCTCGTGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 9743-9470 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGA01000110.1 Nocardia higoensis NBRC 100133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 9742 28 100.0 33 ............................ CTGAATAGCAAGGACAACTGAATATGGCCGGTG 9681 28 100.0 33 ............................ CGCATCCAAGCCGGGCAAGCCGATGAGCATGCC 9620 28 100.0 33 ............................ CAAGGCCGATGGTCGGCACGAGATGGAAGCGAA 9559 27 92.9 35 ...-.....................A.. CCCAAGGCCGACGGAAAGCATGAGCTGGAGGCGAA 9497 28 85.7 0 .......T......G........A.T.. | ========== ====== ====== ====== ============================ =================================== ================== 5 28 95.7 34 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGGGGATGAGCCCCGCGAGGTAGCGGCCGGTCTCGGCATCGGTC # Right flank : CAATGCGTTGTCTGACAGCACGACACCACCAATGCGGGCTCAGCGTTGAACACCACTACCGCGGACTTGACCAAACCGTGGCGCGAGCGTCCATGTTGAGGTGCGTTCAAACGACACGGGAAAGGGTCGGTGATAGCTACTCTCGGCGCATGGCGCTCCGGCCGGACGAAGAACATGTCAGTGGCAGGGCATAGTGTGCGTCGCGTCGAGACTTGACCAGTTGGGGGTTCGGTGCTGAGCAGGGCAACGCTGTCGGCTTGGGCGAAAAGCGATCGGGAGGGCGGAAGCCTCTCTCTGGTAAGGCATTTGGCCGATTCCGCTGAGGTGGCCAAGCTGGTGTGGGATCTGTGGCTGCCACCGCACACTCGTCGTGTGATCGCCGCGGAGCTGGCCGGCGGCGAATCGGATGGGCAGTTGCTGCTGCGCTGGCTCGCGGGTGTGCACGACATCGGGAAGCTGACTCCGGCGTTCGCATGTCAAATGCCTGCGCTAGCTGACGC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 742-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGA01000107.1 Nocardia higoensis NBRC 100133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 741 29 100.0 32 ............................. ACCATGACGGTGGTGGCGCGCTGGCGGATGGA 680 29 100.0 32 ............................. TCGTCGAGGCTGGCGACGTAGTGCTCGGGCAG 619 29 100.0 31 ............................. GCCACCCGTTCACCACGATCTTGATGTCGTA 559 29 100.0 32 ............................. TCGCTCGTCCCGATGGCCCGGAAGCGGACCCC 498 29 100.0 32 ............................. GGGGCCAGGTCTGCACCGGGGTCGCTGTGCGC 437 29 100.0 32 ............................. CCATTCGGCCGCCCACGGTCTCCGCACCACGG 376 29 100.0 32 ............................. CAGCAGGTCCTCGATACCGCGGCTGCGACCAC 315 29 100.0 32 ............................. AGGGTGGTGCGGTCGATCGGGTCGCCACCGAG 254 29 100.0 32 ............................. TATCCGGGTATTCGTCCGGGAATTGATCCGAG 193 29 100.0 32 ............................. TCCTGCGGCCACTGGATCCACTCGGGGAACCA 132 29 100.0 32 ............................. CCGGNGCCGAGGGCGACGGGCCCGCGATGGGG 71 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GGTCTACTTCACCGACAACGG # Right flank : CCGGTCGACCATGTACAGGTAGTGGCGTCCACGTGCTCCCCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-15.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 276-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGA01000106.1 Nocardia higoensis NBRC 100133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 275 28 100.0 32 ............................ CAGCCCGGCACCCCGGCACCGATGTGGTTGGC 215 28 100.0 32 ............................ CATCCGACCCCCGGGGTACCTGACTCACCGGG 155 28 100.0 33 ............................ CACGGCGACGTCTTGGGGCCGCCACCTGTAGTC 94 28 100.0 33 ............................ CTGCACACCGATCACCCGAACACCGGGGTCGAA 33 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : GTGGCGAAGCAGACAGCGCCGGTGAGGAC # Right flank : CCGCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 249-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGA01000105.1 Nocardia higoensis NBRC 100133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 248 29 96.6 33 ............................A CCCCGAGCATCCGATTGCCTACCTGCTCGGTTG 186 29 100.0 32 ............................. TACAACGAGGACCCGCGCCTCGACCGGGGCGA 125 29 100.0 32 ............................. TGCTTGGCGACCGCGCCGCCGGACTGCAGGGC 64 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 99.2 33 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : TTCGCCAATCCGTTGG # Right flank : CGTTCACTTATCGGCGGTCAGGAATCGGACATTCCA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 293-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGA01000104.1 Nocardia higoensis NBRC 100133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 292 29 100.0 32 ............................. TCGCTCAGGTTCGGGTTACGAGTAAGGCCCCG 231 29 96.6 32 ............................A CATGAAGTACATCACGCAGCCGCGGAACATGT 170 29 96.6 32 ............................G TTCCCGCCCAGCGACACGCTGGCGTCGATCAT 109 29 93.1 33 .........................CG.. CCACCGGACCGCGGTCGTGGTGCGCGCGCTCGT 47 29 100.0 0 ............................. | A [42] ========== ====== ====== ====== ============================= ================================= ================== 5 29 97.3 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : C # Right flank : CAGGACGTTCCCGCGCAC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [8.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1101-36 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAGA01000090.1 Nocardia higoensis NBRC 100133, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1100 28 96.4 33 ...G........................ CTTTCCAGGAGTGACACATGGCTATTGCTGTCG 1039 28 96.4 33 ...G........................ CCTGACGGTCCTGCTCAAGCTCGCCCGCCGCCG 978 28 96.4 33 ...G........................ CAACCCGCTCTACAACACCGTGGCCACGATGGA 917 28 96.4 33 ...G........................ CTCGCTGATGTGGTGGCCGAAGCGTTCCAGGGC 856 28 96.4 33 ...G........................ CGTCGCCAGCAGGAGCGGGTTGAGCAGCGTGAA 795 28 96.4 33 ...G........................ CTGACATGACCGAAACCGAGAAGCACTGGACCT 734 28 96.4 33 ...G........................ CCCTCGCCGCCACCTTCCCCGGGACGGCAGCGA 673 28 100.0 33 ............................ CCGCCGCTTTCTCTCTTTTCCGCTACCCGACAG 612 28 100.0 33 ............................ CGGCGGGCCACTACCGTCCGACGCCCAATTGGC 551 28 100.0 33 ............................ CGCCGCACAGCGCGAGTTCGACGAGAAGCTCTA 490 28 100.0 33 ............................ GGTGCCGTGGATGGGGTGGCCGAGCTGCCGGTG 429 28 100.0 33 ............................ CCACCGACACAGCGTGGCGGGGGGTTGCGTCCG 368 28 100.0 33 ............................ CACGCTGACGCCGTTGTCGTCGCCGTGGTCGAG 307 28 100.0 33 ............................ CCGGTGCCGCGCCAGCCACTCATCCGTGCGTGA 246 28 100.0 33 ............................ CTCGGCGTCGGCCTGGGCGCGGGCGGAGGTGAC 185 28 100.0 33 ............................ CCAACCCGACGCCCTCGACTGGCTCGAAGCACT 124 28 100.0 33 ............................ CGCTTGCTGATACACGGCGATCTCCCGCGGCCG 63 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.6 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CCGGTGATCACCATGAGCGGCCTCGAAGGCATTGGCCTGGACCAGTTTTGGGACACTGTCTTGGAACACCGCCGAAAGCTGACCGACGCGGGCCAGTTCGATGAGAAGCGCCGTCGCCAGCTGGTGGACTGGACGTGGACGATGGTGCACGATCAACTTCTGCGGCGACTTGCGGATGCGCCCGAGGTGAGGGCGATTCGTGATGACGTGGAGCGTGAGGTGCGCGAGGGGACTCTCACCGCAGCTTTGGCAGCCGAGCGGTTGCTGGACGCGTTCGATTCAGCCCCCCGACACCAGTAGCGGCCGTCCACGCAAAGTAGCGGCGGCTTCTCGAGTCTTCACGCCGGTTCCGGACGCCCTGTCGTTCGACACTTTCGCAAGTACTGTCGTGGCGGAACTAATCTGGATGTCATGGGTCGAAGGAAGTGGGCTGGCCGAAACTGTGAAGGAAAGTGAATGAAAAACGGCCTCACCCATCGAGAACCTGCAGGTCAATTAGT # Right flank : CCTCGGCCCGCAGTCGGTGGATAGACAAGACTAGGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : GTGGTCCCCGCGCATGCGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //