Array 1 4397344-4396460 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081287.1 Pseudomonas aeruginosa strain F092021 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4397343 29 100.0 32 ............................. TTTGCACGGATGGGTTTTGCCTGCATACTCCA 4397282 29 100.0 32 ............................. GGTGCGGAACTCTTTGTTAAGAGGCCTCAGGT 4397221 29 100.0 32 ............................. GACGTTACCCTCGAATTCCTCGGCGGCTTCAA 4397160 29 100.0 32 ............................. CTCTCCCACACCTCGGCATTGCCGAGCGCATC 4397099 29 100.0 32 ............................. GTGGCAGGATGAAGCCGGCGCCGGCCGACTCG 4397038 29 100.0 32 ............................. TCGGAATACTCCTGGGCGTCCTTACCAGGGAA 4396977 29 100.0 32 ............................. GAGGCGCTGAAGCACGTAATCCCGGATACCAA 4396916 29 100.0 32 ............................. CCGTATCTGAATATTTTTGCACGCATGCTCAT 4396855 29 100.0 33 ............................. TTCATCGGTGATACTGAAGCTAATGCTGCTGTG 4396793 29 100.0 32 ............................. CAGGCCTGAACCAGTCCGAGCTAGCCCGGCGC 4396732 29 100.0 32 ............................. TCCGCCGCGTGCTGCGCGATGACGGCACGCTG 4396671 29 100.0 32 ............................. CAAACTGCCCATGTGTGGCGGGGTCGGGTGAA 4396610 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 4396549 29 96.6 32 ........T.................... AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 4396488 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.8 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAAGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4407214-4406515 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP081287.1 Pseudomonas aeruginosa strain F092021 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4407213 29 100.0 32 ............................. TCCGCCGCGATTGCCCGCGTGGCCAGGACTAC 4407152 29 100.0 32 ............................. GCTGCTCAGGCTAGCGCCGCCTCTACTCTCAT 4407091 29 100.0 32 ............................. TGTTTACGAGCTTCAGCGGCCCTCCATGTAGA 4407030 29 100.0 32 ............................. GAGGAGTTGGAGGCCATGATCGGCGCCAAGTC 4406969 29 100.0 32 ............................. GCGATCATCGAATGGCCGCACCGCATGGACCT 4406908 29 100.0 32 ............................. CTCAACGAGAAGAACATCCCGCGCAACATGAT 4406847 29 100.0 32 ............................. GCCATCAAGGAAGAGCCCCAGCTGCGCGTCGA 4406786 29 100.0 32 ............................. CTCGCGGACAACACCCCGAACCCCTACGTCGG 4406725 29 100.0 32 ............................. CTGCGCGTTCACGCCGAAACCCTTGGCTGGGT 4406664 29 100.0 32 ............................. ATGGAAGACCCAACCCGCGGCCAGGGGTGGGG 4406603 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 4406542 28 79.3 0 A..........A..C.....-..A....T | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.4 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTTGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCATG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //