Array 1 131563-132786 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001538.1 Lactiplantibacillus pentosus KCA1 chromosome, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 131563 36 100.0 30 .................................... AGTAAAGTTGCCGTCATCGCCATTGATCAA 131629 36 100.0 30 .................................... GACATCAATGACACTCATGATCAGTTTATT 131695 36 100.0 30 .................................... TTTCGGGTAAAGGAATCCATGTCATCATTA 131761 36 100.0 30 .................................... ACTTCTGCTGTAACGCTGAATTGACCATCA 131827 36 100.0 30 .................................... CAGCAGAGTTTCTTTTATACCAATAGATAT 131893 36 100.0 30 .................................... CCATAGTCAAGTAGCTTGAGCGTGTCTGAT 131959 36 100.0 30 .................................... TTGGTTCATAGTACTCAATCTTGGTAGCAT 132025 36 100.0 30 .................................... ACAAGCCTTCTGACTTAGTCCAATCAACGT 132091 36 100.0 30 .................................... ATCGGCAACCGTATATCGCTCATCAACAAT 132157 36 100.0 30 .................................... GGTATGGTCTAAATGAATCTCAATACGTCG 132223 36 100.0 30 .................................... AAAAACTCGGTCTGACGTTTACAGATAGCT 132289 36 100.0 30 .................................... TTCAATCATGCGAACCTTATCTAAACGATA 132355 36 100.0 30 .................................... TGCTAGCGTATCCGCGTCGGCTCGCGACCT 132421 36 100.0 30 .................................... ATGTTTGCCCGCCGTATTGGCCGGTCTCGT 132487 36 100.0 30 .................................... AGATGAGTTCCATTGGTGGTAAGGCTACAA 132553 36 100.0 30 .................................... CTAGTTTCGAGACAAAAGCATCAACTGCAT 132619 36 100.0 30 .................................... AAATTTGGTGACGCGTGGAACGCTTATTAT 132685 36 100.0 30 .................................... CCAAATTTGGCAATCGTCATCATCTCCATT 132751 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 100.0 30 GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Left flank : CAGTCGATTTGAACCACTTGTTTATGAAGAAGATACAGGCCCAGATTATTAAGTTAATGGCCGATGAACAACAAGTGGCGGTCTTGGATCAAAGCCGGGCTATGATTGCCAAAATAATGGAAGCAAGTTTCTTATTGGATCTGCCACTAGATGTAGAGGAAGCGCCGGGCCTAGAACAAGCTTTGAAGTTTGCTGGAATTCACTTTCCCACGGATTTAACGCATAATCCTAGTGCAGTTTTAGAGGCGCTTGTTCAAACTCATGTTGAACTAGGACTCAAGCAATGCCCTGTGATGACCAATGTCAGCCACTATTTGAACCCGGAACAATGGGCCGTTTTTGAACAGCAAGTGGCAGATTTAGGCACCACGGTTATTATCATTGAATACTCAGAAATGAATCGGATGGAAAAGTTCAAGGATTGCTGTTATTATTATGTTGACGAGGATTTAGTAGACTGGCGTGATATGAATTAATTAGTGGATTATGTGAGAATGCCG # Right flank : CTTTGTGTGGATAACCCTCGTGTTACTGTAGTCTTGAATAGTAGTTATTAAATTCGGCTATTAAATTCTCAATCCTACACACCAAAAAACCGCCCGACCCACCAGGTCGAGCGGTTTTTATTCGGCAACTAAACTAATCAAGCACGCGGTCTTTACCCATTCGCCGGAAACGGATGAACTTCCCGATTTCGGTTACAATCAGAACGACGATCCCGCAGACGATTGGGATGCCCCAACCATACCAGAAGTTGATGCTGGTTGTATGGAAGACGGATTGCATGAATGGCAAGTAAATGATGCCAAGCTGGAGGAGAATCAGAATACCGATAATGTAGAACGCCATCTTGTTTTGGAAGAAATACTTGGAAATGACAGGGTGGTCGTTTCGCAAGTTGAAGAGGTAAAAAATCTTACCAAAGATGATGATGTTCAGTGACATCGTACTACCGACCACGTTCGGTAAGCCGAGTGCGGTCAAGTAGTCGTAGGCGAAGATTCCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGAATAGTAGTCATATCAAACAGGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 1241144-1239838 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001538.1 Lactiplantibacillus pentosus KCA1 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1241143 28 100.0 33 ............................ TAAGCTCTAACCCTGTTAATTCTTGCCTATCCA 1241082 28 100.0 33 ............................ TTACAATAACGATCATGACATTGACCACGTTTG 1241021 28 100.0 33 ............................ TAAAACGATTAACCGGGTCGTTTAGATCTAAGT 1240960 28 100.0 33 ............................ CGCTCAATTACAAGGGATATTATTTATTAGAGA 1240899 28 100.0 33 ............................ TGATCACTGGCGTTTTTTGTGCATTCTGATTAA 1240838 28 100.0 33 ............................ TACCAACATAAGTTTTGCTGTCATTAACATAGC 1240777 28 100.0 30 ............................ TCATTACTTGCCATACATGATACCAATAGT 1240719 28 100.0 33 ............................ CAGTTGAATAGCCATCCTCATAATTGCCACTCA 1240658 28 100.0 33 ............................ CGAGTGGATTGACAAGGTATCAAAGAATGATAA 1240597 28 100.0 33 ............................ CAACGTGGCTATGAGCGAGCTATCCGGCAGTCT 1240536 28 100.0 33 ............................ TTGGTTACGAGCCTGGCTTTATGCAAGGCGTAC 1240475 28 100.0 33 ............................ TTCGCACTCATTACCCCACTGTTAAAAATGTTT 1240414 28 100.0 33 ............................ TAACTGCTTGATTTGCTTAACAATGAACTTATA 1240353 28 100.0 33 ............................ TAGCGGCGGACAGATTACTTGCGGTGACAGACG 1240292 28 100.0 33 ............................ TTTATAATCGATAGCCGTTTTATCCGCCAAAGT 1240231 28 100.0 33 ............................ TATGGGTTCGCGATCGTTACCGAGTTCGCAAGT 1240170 28 100.0 33 ............................ TAGATTAAATTGCGTCATAATTCAACACCTTAA 1240109 28 100.0 33 ............................ CCACCGGAAAGGTGAGAGGCCTTTTATGTTTAG 1240048 28 100.0 33 ............................ TCGTTTGCGGCTGTACAACGCAGTGTTCAATTG 1239987 28 100.0 33 ............................ CGGCTCCGCGGTGGGAGCCGCTGCTAGTTTCCC 1239926 28 100.0 33 ............................ TGACCAAGTGACTGCTGAAACCGGTGAAGCGGT 1239865 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.8 33 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : ACTGGAAGCGGCTAACCGCTTGCTACAACAAGTCGGCGCACAGGTGGTAGACCAAATGGCGATTCTGGCGGAAGGTGCAGCTAGTGTACGAACAGATATTGAGTTTTTGGCGAAATTGCCACTGTTTGATGGACATGACTCAGAATAATATCACTAGTCGTGAGTCTCGCAGCTGAAATAGATTTGACGGAGGATTTTATAGTCATTTTTGGCTTTATCAGTATTGTGTGACCATTTAGACCGGTTAATTATAAATTCGTTTATACGGCTATTTTGAGCCGAATTCGAGCGGTTCACAAAATCTTGAGAAGCAATCATTCTTCAATGGCAATGCAAATTCAATTAAACTGACGGGCACGCTATACTTTCGTGGATGATATTTTAGACAATTGACCATCCTCTACTTGCAATGACCTGTCAGTCTGGTATGCTAAACCCAAGTTGATGTAAAAACTCAATTTTGCAATTTTGGATTGTTGATTTAACGGGATTTGTTTAGT # Right flank : AATCAAACTATCTATTTGCTGATACTTGCAATGATTTCCCACATGTATACATGGGTTGACCCTCTACCTGCTTATCGTACTCATAAAGGTAAATCGAAGCATTTTTTGGAAGACTGTATAAAAAATAAAAATGCAATCAGGTATTTAAGAACGCAGATTTTAAATCATAATCCCTATAAGGAATACCAAATTCATATCGGTAGTACAATATCTTTCACTAAACTTCCTGGGAAAGCCTTGGCCATGTAGTTTACGACTAGATGCGGGTGTCACTAAAAGCTAATAATTTTGGAGGAGAGTAATGAAAAAAGTTACAGGTTTCCTCGTCATAATCTTTGCGATTGTAATATCAATACAATACTGGTGGGCCTTATTGTGCGTGTCCGGGATTTCTCTAACAATTTTTGGGATAATTAGAGCAAGGAAGGATAAGCAAAGAAAATCTCGTCAATCTATCTATCAGGTCGATAAACATGGCCAACAATCTTCAATTGGCAAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1459107-1456695 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001538.1 Lactiplantibacillus pentosus KCA1 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 1459106 28 100.0 34 ............................ CTTGGAAGAAATCAATATCAGTCAGAATACCTGC 1459044 28 100.0 33 ............................ TCTGTCATGATAATTCTACCTCCTGAATGTCGT 1458983 28 100.0 33 ............................ CAGCCTCTGTGGCGTCCATAATGCGCTTTGAGG 1458922 28 100.0 33 ............................ TATATCCACTATCAGGCATCGGATGGCATTGAA 1458861 28 100.0 33 ............................ CAATTAAAAATGACGACTATTGGAAAGCGATCA 1458800 28 100.0 33 ............................ CGTAATTCCTCGTTCGTAGTTTTCAATCGAGTA 1458739 28 100.0 33 ............................ TACCTTAAATGCAACGGGAACGTCACATGAGGA 1458678 28 100.0 33 ............................ TTACAGATACAAAAAGATAACAAGTGGAATGAA 1458617 28 100.0 33 ............................ TGCGGGTTCGAACCCTGTCAGCGATATAGTTAA 1458556 28 100.0 33 ............................ TGTTCCAGTAGACAGGCCAATTTGAACTTCAAA 1458495 28 100.0 33 ............................ CATCTCCCACGACGTTTGACTTGAGCTTGTATG 1458434 28 100.0 33 ............................ CTGCTATCTGATGACATGATGAAGAAGTATGCC 1458373 28 100.0 33 ............................ CATTGACCATGATATTATTGATCAAATGGACGG 1458312 28 100.0 33 ............................ TATAAACTGGATCACGTAGCTCACGGTCTTTCA 1458251 28 100.0 33 ............................ TGGCGCTACTTAGATTAATGGAGATTATGTAAA 1458190 28 100.0 33 ............................ CTACCGAACCGCGCTTGTCCTCGATGGTCGTGA 1458129 28 100.0 33 ............................ CCAAGTCAGTTTCGGAAACCACCGCTTGGTCTA 1458068 28 100.0 33 ............................ TCAGCTTGGCCATGTTCAATCTTAGTGATGTTA 1458007 28 100.0 33 ............................ CTAGTTGCGAGGTCGCTTAGCTCAGCAAAGATA 1457946 28 100.0 33 ............................ CTCTGGTGACTTTGTGTACCATTCAATGATGGG 1457885 28 100.0 33 ............................ CCGCGATGATTTTCTATTTGAAAAATAACTGGC 1457824 28 100.0 33 ............................ CTTAACCCTTACCAATTGGTAAGGGTTTTATTA 1457763 28 100.0 33 ............................ TGGTAAATTTACTGTTTTAATCTGATCTTCCGC 1457702 28 100.0 33 ............................ GTGATTATCCCGCACTTGGATACCGAATAGGTT 1457641 28 100.0 33 ............................ TAACGCCGGCCTTGTTTAGCGATTGTTGGAAAG 1457580 28 100.0 33 ............................ CAAATCCATACTGTTCTGTTAAAACCATCAAAC 1457519 28 100.0 33 ............................ CTGATACGGTCAACAATGCGTTAAATACCAAGG 1457458 28 100.0 33 ............................ CCAGGAATCGGGAAGCGTCGCGTCACCGTTGAT 1457397 28 100.0 35 ............................ CATTTTGTAAAAACTTTCAGCTTCTAGTTTCATGT 1457334 28 100.0 34 ............................ CAGCCGCGTCGGCATCGTGCATCATCGACTCTTG 1457272 28 100.0 33 ............................ TATATTAGAGAAAAAGGCGTTGTATAGCTATTT 1457211 28 100.0 33 ............................ CATCATGGGACGCGTACGCCAAAGCAATGAACA 1457150 28 100.0 33 ............................ CTATGATTGAAGCGGTGGGGCTGGCTGATACAG 1457089 28 100.0 33 ............................ CATACCAATGATGACTATTCTCGTCATAGTAAG 1457028 28 100.0 33 ............................ TATCGTCCCAATACTCGTGGTCGTCAGATTCAA 1456967 28 100.0 33 ............................ CAGCACTTTGGCCATCGCCTCGACAGCTTTGTG 1456906 28 100.0 34 ............................ CCACATGCCAGACTTTACCAATGAGGAGCTATAC 1456844 28 100.0 33 ............................ CGAGTGTTAAATCTATCCATCCAGTATCTGAGG 1456783 28 100.0 33 ............................ TGCTGAATGCTCTGCTCTGTTTAGATAAATTTT 1456722 28 78.6 0 ..........T.C..A..A.......TT | ========== ====== ====== ====== ============================ =================================== ================== 40 28 99.5 33 CTGTTCCCCGCGTATGCGGGGGTGATCC # Left flank : AATTATTTGTGCGTGGCAAATTAAAAGCAGCTTTTTGCCTGCAAATTTAATGCATATTTAGAATTCACGTTTATTAAGCGCTTACAATTTGTTGTGAACATTGTGATAATTCTGAATTATACTGGCAAAAACTCATCGACTTTCATCCGTACATTTTCGTCAGAACCCTAAACTGCTTGTAAACTCTCTCGACTTTTAAATATATCTCCCCTACATTAACATACTGGCTATTCATCAACAATTCGCTTTATGTTATCCCACTTACTGGTTGAATTATTTCTAATTCTATACTTCTAATATTAGCATTCAATGTTTGAATAAACATCTATTTTTGGAAGGACTTTGTTGGATTTTTGATAAATTGTGACGACTAGTTTGAGTCAAGCCAGTCTTATATGTCCAGTTTTGAAGTTTCCCCTATAGTTGCTTTCAATGATCAAGTTAATGTAAAATGATACTTAGCCAATTTTGGATTGTTGATTTACCGGGATTTGTTTAGT # Right flank : CTGAACTCGATGGTTCCTCAACGACTGCCACGTTCTCTGCACATGTAGTATTCCACCCGAGCCGATATCATTGTTCAACACCAAATATTTTGTTCAAAAAAAGACCGCCACCCCACAGGATGACGGTCTTTCAACATTAGAGCAACGCCCTAATTAAGTTTTAAATTAAGCAAGTGCCTTTTTAGCAGTGTCAACTAATGCCTTGAATGCATCTGCATCGTTAACGGCTAAGTCAGCTAACATTTTACGGTTAACGTCAACGTTAGCAACCTTTAAACCGTGCATTAATTGGCTGTAGCTGATGTCGTTGATCCGGGCTGCCGCGTTGATCCGGGCAATCCAAAGACGACGGAAGTCACTCTTACGCCGGCGACGATCGCGGAAAGCGTATTGGTATGACTTCATTACTTGGTCCTTAGCAACCTTAAATTGGATGTGCTTAGCACCACGGTAACCTTTAGCTAATTTTAAAATCCGTTTGCGACGTTTGCGTGTTACAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1462549-1461724 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001538.1 Lactiplantibacillus pentosus KCA1 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1462548 29 96.6 32 ............................C GGCGCGTTAGTTTGTGAATTGAAATTGGTATA 1462487 29 96.6 32 ............................C GATTGGCAGAAGCATTCAATCAAGCTGGGATA 1462426 29 100.0 32 ............................. GTCCGGTATGGCTTAAGTAATACCGGATTAGG 1462365 29 96.6 32 ............................C ATCATGACCTAGTTGAGTATCCGGCAAGGTTG 1462304 29 100.0 32 ............................. CCGCCCGAATCATGGCGGAGCAGAATCTCAAA 1462243 29 100.0 32 ............................. ACGGAAATTAGCACAAACCAACTACACAGTTA 1462182 29 100.0 32 ............................. AAATCAAACGCTAAGCCAGTACCAAAATCTTC 1462121 29 100.0 33 ............................. CACAGCGGCAACAGCTAGGCGGGCCGTTCACGT 1462059 29 100.0 32 ............................. ATAAATAAAGGAGCTAAATATCATGGCAACCA 1461998 29 100.0 32 ............................. ACGGTTGCGTTTACGGCCGTGCAGATGTTTTT G [1461976] 1461936 29 100.0 32 ............................. CCTGGGATTTTACTGATGATTCTGGTGTGAGA 1461875 29 100.0 33 ............................. TTCAGTAAAACAGTGTAAAGCCTACTGTCATCG 1461813 29 93.1 32 ..G..........G............... CAGTAACCGATTGACATTCCTGTATTTGGAAC 1461752 28 82.8 0 ............C..A......C-...T. | G [1461728] ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.5 32 CTATTCCCCGTGTATGCGGGGGTGATCCT # Left flank : TTTCAATATCACGACTATTCCCCGTGTATGCGGGGGTGATCCTAGCTTGGTCAGTTTTGACCGTAGTTCCAGCTGCTATTCCCCGTGTATGCGGGGGTGATCCTGAAAACGTCAGCCCAGAATCTATCGCACGGCACTATTCCCCGTGTATGCGGGGGTGATCCCGATTGGCAGAAGCATTCAATCAAGCTGGGATACTATTCCCCGTGTATGCGGGGGTGATCCTTGATATTTGCAAAATCAATGGTTGCGCCGTTGCTATTCCCCGTGTATGCGGGGGTGATCCCATCATGACCTAGTTGAGTATCCGGCAAGGTTGCTATTCCCCGTGTATGCGGGGGTGATCCCGAAAGCCATTACGACGCCAGATGATTGCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATCAATGGTTGCGCCGTTG # Right flank : GTACCGATTCATTACACAATCAGCATTGCTATTGTCTCTAATATATACAGGACTATTTCAGCATTTATACAGAGCGATGAACAGCATTACTTCATCAACAGGACAATTTAACTTCTATGAGAACCAATGGCTAAAATTTTAAGTTCACACCACCAATCTTCCTTGTGAATCCAACTTCCATTACACAAATAGTGTATCTCTCAGAGGTGTGCTAAATTTTTAACTTTTCTACCTTACTTAATGCTTGAGCTAATGCCAACGTCGCCCGAGCATCCTCTAGCGCATGATGTGGTTTTGAATTCTCAATTTCGTATGCTGACAGTACTGTGGCTAGTCGATAGTTATCCAGAAACGCATTGGTACGTTTCACAATTGGCATTAAATCAATGGTTTGACTTCTTAACACTTCCAAATTATTGCTGATGAATGCTTGCTTTAAGAAGGCCTCATCGAAATGAAAATTATATCCCAAGATTGTACAATCACCTATGAAAGCATTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCT # Alternate repeat : CTATTCCCCGTGTATGCGGGGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1464539-1463351 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001538.1 Lactiplantibacillus pentosus KCA1 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1464538 29 100.0 32 ............................. ATAATCTTCGGTATTTTGAAATTTCTCATTAG 1464477 29 100.0 32 ............................. CATTCTCATCGTCCTCCTCATCAGCAATGACG 1464416 29 100.0 32 ............................. GAAAAAGCTGAAATTCACGTCAAGGATAACAA 1464355 29 100.0 32 ............................. TGGAATGGTGCTATCAAAGCTAACTCTATCTA 1464294 29 96.6 32 ............................C TTTCACTAATGCAGCAACAAATAGCGCGATGG 1464233 29 100.0 32 ............................. AATTCCTTGATCAGTGAATTTCAATTCTGTTC 1464172 29 100.0 32 ............................. ACCTATCCCGCCAAACCATTGGGAAGGTTAAC 1464111 29 100.0 32 ............................. ACAAATGATATTAGTGAAGCGGCCATTGCTAG 1464050 29 96.6 32 ............................C CATCGGTGTGCAGGCCGGTTAACAGCATTTCG 1463989 29 100.0 32 ............................. AGCAAACGCTAACAAGCCAATAGCTACAACGA 1463928 29 100.0 32 ............................. CGCCTTGATTGATGAAATGCGACCAGCCTACC 1463867 29 100.0 32 ............................. ATGACAACCTCTAATAAGCACTAGGAGACGGT 1463806 29 100.0 32 ............................. CAGGGACAACCAGTTAGTGAGACGTTGGTCGG 1463745 29 100.0 32 ............................. GCTGGCTTTGGCATGTCAGACATGACAGAAGC 1463684 29 96.6 32 ............................C GAGCACGCCTGGTATCATCGGAATTACCGGCT 1463623 29 100.0 32 ............................. GTAGACGTTGGCGACGATGATACGCCAGAAAG 1463562 29 96.6 32 ............................C AGCGATTTCATGACTAAATTAACTTTTGGTAA 1463501 29 100.0 32 ............................. GGTAAGTCGGAGAAAACGATTTATCAATACGT 1463440 29 100.0 32 ............................. CGGCTGGTAGTCAATCGGTTCGTATTCCCACG 1463379 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.3 32 CTATTCCCCGTGTATGCGGGGGTGATCCT # Left flank : GATAAATATATAGGATGCCGGGTGCTTGTAATTCATTTTGCACAATTTTCCCCACAAAACTAGTGGTGTGAAAACTATTCTCAAACGCTATACGACGTAAAATATTGGATTAGTCTGATGAGCTGGCATATCGCTATCTTTAGAATCAGGTAATACCGAACACTTTTCACAAATGTTCGTTAGTTATTTATGACTACACACGCATGATCAGTAAGAATGGTCAATTTGAGGTGGGAATCCGTTGAAATAATTTCCTTAGAAATTAAGACATAGGTCAAACATTCAAACCTACTTAAGCACAATCGTAATCATGTATATCTTATATTAACATTTAGAAATCAGAAAATCATCTACCAATTTGTTACGTTCCACGCAGATATTCATCTTGCTTGAAATCCCGGTTTCTTGTATAGTCCTAATTGTAGATATCAATTCAGCAAGTTGATGTAAATTTCGGATTTACTGATTTCATATTGTTGATATGCCGGGATTTGTTTAGT # Right flank : AAATGAAGTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCAGCCACAGCTGATACGTCCTATTCCCCGTGTATGCGGGGGTGATCCAACGTCCCATTGTAGCGATAACTTTTGACCAAGCTATTCCCCGTGTATGCGGGGGTGATCCCTGCCAAGGTTGTCCCATAATCCTTCATTCGTTCTATTCCCCGTGTATGCGGGGGTGATCCTGCAGGCGGTCTGACCCGTTTTCAATATCACGACTATTCCCCGTGTATGCGGGGGTGATCCTAGCTTGGTCAGTTTTGACCGTAGTTCCAGCTGCTATTCCCCGTGTATGCGGGGGTGATCCTGAAAACGTCAGCCCAGAATCTATCGCACGGCACTATTCCCCGTGTATGCGGGGGTGATCCCGATTGGCAGAAGCATTCAATCAAGCTGGGATAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [11.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //