Array 1 9736-10484 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYY01000024.1 Clostridium botulinum strain 51714-DC contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 9736 30 100.0 36 .............................. TGATAAAAAATTACCGTATATTTATATAATAATAGA 9802 30 100.0 36 .............................. AGATGTCTCTAATACACTTCTATCGAGTAAAGTTCT 9868 30 100.0 36 .............................. GCTTCAAGGACATTAGTATCTACATTCCCATTATCG 9934 30 100.0 35 .............................. TAAGATACTAGATTTCCCTTATTCATTGCAGTTAA 9999 30 100.0 35 .............................. TCTATGGTTTTATCTTTATTTAGATACTCTTCTAT 10064 30 100.0 35 .............................. TTTGCACGTACTGGACATAAACAACATGAACAACA 10129 30 100.0 36 .............................. GAAACCAAAAGCCATCAATAGAAACTCACGCAATAC 10195 30 100.0 36 .............................. ATCCAAATCCTAATACATTTAGGATTTCAACTAGTG 10261 30 100.0 35 .............................. TATATTAAGTTATCAAGTTAAACATAATATACTAA 10326 30 100.0 34 .............................. TTAAATCCTTATATAAGTATTGACGGAGGTTTTC 10390 30 100.0 35 .............................. CTGCATTAAAATATTTTAAACGTCTTAATACGTTT 10455 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 12 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGAGAAGATATAATGAGTAAAAAATTTAATTATAATTATGCATTTTTATTTTATGATGTGAAAGAAAAAAGGGTAAATAAAGTGTTTAAGGTTTGTAAAAAGTATTTAACTCATTATCAAAAATCTGTTTTCAGAGGTGAGATAACACCTTCTAATATAATAAAATTAAGAGAAGATTTAAAAAAAGTAATAGATGAAAGTGAAGATTTTATATGCATAATTAAATTATTAAATAATAAAGTATTTGGAGAAGAAGTGCTAGGAGTAGATATTGAAACAGCAGAAGATTTAATTTTATAAAATTATTTTACCAACTGCTTCGAAAAAATAAAACGGTCAAAAGTGTTGATTTTACTGGTTTTCTATGTAACTTAAACTGAAAAAAATAAGTTGTTAAAATTGGTTGGGAAAAAATTAATGAAAGTGTTTATTTTCAATAGGTTTAGGGGTATAATAGAAACAAGGAATGGCTATTTTACTATG # Right flank : TAGAAAGTAAGTAAATATTAATAGAAGTTGTTATAACAACTTCTATTATGAGAAGAATTGTTATAAAAGACATGAATGATAGATGTTTTTGAAAAATATACTCAAAGTTACTCAAAAAATGACTAATATACTCAAAAATTTAAAACACCCCTATAAGTAAAAACTTATAGGGGTGTTTTAATTATCTGGAGTAATTAAATCTATATTGTGTTCTTGAAAAAACTTAACATATTCTTTAGGTGGAAGCTTATCGGTAATAAAACAAGTGATATCTTCCAAATTACAATAAGTTTTAAGAGAAGCTGTATCTAATTTTGAGTGATCAGCTAAAAGTATTACATTTGAACTATTTTCAACTACTGTTTTTTTTACATCATATTCAAAATTAGATGAATTAGTAACTCCTTTATCAATAGAGAAACCTGTAGTGGCCATAAATGCTTTCGATATATTATAATTTTTTAGGAAGTTTGAAGCTTCTACACCGATTAAAGAATTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 30575-30895 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYY01000039.1 Clostridium botulinum strain 51714-DC contig_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 30575 36 100.0 34 .................................... ATATAAATCTTATTTCCATCAAATACATATCTAG 30645 36 97.2 35 T................................... CATTAGTTATTGAAGAATTACCATCATTTCCACCT 30716 36 100.0 37 .................................... ATAGGAAACTTTGATAATGTAGTAAAAAACTAAGTAG 30789 36 100.0 35 .................................... CTTCTAGTTCTTCTTTAGTATAGTCTTTACCTTCC 30860 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 99.4 36 GTAATAAAGATATTAAGCTCCATAGGAGATTGAAAC # Left flank : GCATTAATGAAAGAAATTGAATATATACCGTTTTTAATTAGATAAGATAGGAGAAAATGTGGTATGATGTATTTAGTTAGTTATGATATTGTTAATGATAAGAAAAGAACAAAACTTCATAAATTGTTGAAAAACTATGGTGTAAGAAATCAGTTCAGTGTTTTTGAATGTAATTTGGATGATAAAAAGTATGTTGAACTTGTATATAAGATTAACAATATTAAAGTAGAGGCAGGAGATAGTATAATGATTTATCCATTATGTTATTCTTGTAAATCAAAAATAGTAAGAAAAGGTTCATTTATTGAAATAGATGTAAAAAATATGATTTTTTAATGCGCCAAGCTTAGTGTTTGAAAAAGTACGTTGACATGGCGATGGCTTTAAATAGCCATTTGTAGATAGTTTTTTATAGTATTGGTATAAAATTTAAAATAATAATAGATACTTTGCGAATAATGCGGGTCTATGTTAGTGTTTGTGAGGGATAAAACGCCGGC # Right flank : CGAAAGTAGCTAGTCTTGAATGGTTAGCTACTTTTTATGTAATAAAGATATTAAGTATAAGTGCTATTATGGGAATGCAAGAAAGTGATCATCTAAGGATGTAAGAATTAGATTTATGTATAATACTATAATTACAAACATTTAAACTGGAGGTAATTATGATTATACAAATGAATATTAATTCTGAAATACAAATAGATAAGTTAGAGGATCTTCATAAATTAAATTTAATTATGGAGGAAAATAATTTGAAAGTAAATAAAAGTCAAATAGCTAGAGAACTTGGCGTTGATCCACGCACCGTAGGTAAATATTTAAATGGATATGTAAAACCTAATACTAGAAATCGTAAATCTAAAATAGACCATTTTGAACCTATTATCAAAAAACTTCTTGGTAAAGATTCTATTCAAATATTTTATTATAAACGGATTCTGTGGCAGTATCTTAAAGATAACTATGGATTAGATTGTGCTCAATCTTCTTTTAGAAGATATATC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAAAGATATTAAGCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : NA // Array 1 28006-28817 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYY01000068.1 Clostridium botulinum strain 51714-DC contig_68, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 28006 30 100.0 35 .............................. TTATTTGTAGCTATAACATCTTTGCCACCATCACA 28071 30 100.0 33 .............................. GGGTTTTAGGACCTGTAAGATATTGACTAACAA 28134 30 100.0 36 .............................. ACATTTTTGTGTTTTAAATATTAACTTGCAGTTCTA 28200 30 100.0 35 .............................. ACAATAATCTGATTAAATGCATGGCGTGTTTGTTT 28265 30 100.0 34 .............................. TCCCAATGTGCCAATTAGAGTTGGTATAAGTGGA 28329 30 100.0 36 .............................. AATGCTTTAAGTGCTGACAAAAGTGGATTTAAATAC 28395 30 100.0 35 .............................. AAGTTGAGAAAAGATATAAAAAATGGAATTCTTAC 28460 30 100.0 36 .............................. GAAGAAATTCCAGAAGAATAAATCGTGCCTATGGGG 28526 30 100.0 36 .............................. AAACAAAAAGATATTAAGGAGGTTTCAAAAGGTACA 28592 30 100.0 36 .............................. ATATGAATAAGCATATGAGAGGATGAAAATAAAATG 28658 30 100.0 34 .............................. TCATTCGTTGCTGCGAAAGTAGTATCTCCTTTCA 28722 30 100.0 36 .............................. TTTTCTTTTCTATTAATTCCATGATAATTCCTCCCT 28788 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 13 30 100.0 35 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : ATAAATAATGAGCCTTGGACTAATAAAATGGATATAGATTTATTAAAAAAGAGTATCAATGAGAATTTAATAAAGAAGATAAAAGTTATTCAGGATATAGATGAAATTTTAGAACATGATATGATAAAATCTATAAAATTAAAAAATAGAATGCCTATAGGATGTAAATACAAACAAATCAAACTATTGGGGAATAAATTTGAAATAGAAATTAAAGATGATGATATATCGCAATTCATGGCAAATATAGCTGTGGCAGTAGGAATTTTAGAAAAAAATTCTCTTGGTTATGGTTATTGTTTATACAAAAGTAAGTAAATTATTTTCCCAACCGATTTAAAAATTAAAACCAGCTATAATCCTTAATTTTACTGGTTTTGATATATGTTTAAGTTTCAAAAATGGCATTACTAAAATCGGTTGGGAAAAATATAATAAAAGTGTTTATTTTCAATAGCTTTAGGAGTATAATAAAAACAAGGAATGGCTATTTCCCTATG # Right flank : TTTTCTCTAATTAAAAATGGTCTTATGTCAATATCATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 53160-52146 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYY01000072.1 Clostridium botulinum strain 51714-DC contig_72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 53159 29 100.0 36 ............................. ACGGATGATTTGGCGGTGGTGTTGCTCTAAGTCTAT 53094 29 100.0 36 ............................. TTATTCTTCGCCCTCCTTAATAAATACAAAAGGAAA 53029 29 100.0 37 ............................. AAAGGTAGTTTAAGGCTTAGTGATAATGTACTACTTA 52963 29 100.0 39 ............................. GGGTGTTTTAAAGACAGATATTTTAAAATGGGTGCGTGT 52895 29 100.0 37 ............................. TTGCTTTCGCTTCACATCCGCCATATTCTTCTAAAAA 52829 29 100.0 37 ............................. GAATTTGTTACGTGTGAAAAGTATTATTATTTTATAT 52763 29 100.0 36 ............................. TTTTGAGATTTAGCTGCTATAAAACCTAGTGCAATT 52698 29 100.0 37 ............................. TTTTTTATCCCTCCAACATTATAATTCTTTTACTATT 52632 29 100.0 36 ............................. TTATTTCTCTTAATTTCATTTCTTTTAACATTTTAA 52567 29 100.0 37 ............................. TCATGCAAAACTTCACATTGATATACTTTCGCTCTAA 52501 29 100.0 37 ............................. TCTAATACGTCTTTTGCTATTTGTAATTGCTCGTCCA 52435 29 100.0 37 ............................. CGGTATCGGGATACATTTTTTTTAGTATCTTACATAT 52369 29 100.0 36 ............................. CCAATTACTTGAGATATATTTTTGAAAATAGCTTTT 52304 29 100.0 36 ............................. TACAGAATAGTATATAATTTCTTTCATTACTTTTTT 52239 29 100.0 36 ............................. CTAAAACTTGCTATATATTGCATTCTGTACTTCACC 52174 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 16 29 100.0 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : ATTGAAGATGAAAAATATAAACCTTTAAAGGCATGGTGGTAATTGATGTTTGTTATACTAACATATGACATTGAGGAAAAAAGAATAAATAGAGTAAGAAAATTATTGAAAAAATATTTAATATGGACTCAAAATTCAGTATTTGAAGGAGAGATTACAGAAGGGAAATTGCATAAGTGTTTATCTGAGATAAATAAACACATTGACAAAAAAACAGATTCAATATACATTTATAGAGTTAAGATGAGCAAAAATATAACGAAAGACGTAATAGGTATTGAAAAAAGTTTCGATGAACTATTTTTGTAAATACAATTTGCAGTATTGCAAACAAATGTTCTCATTGCCTTAAAGCCTTGACATATCTAGCATAAAGGGTATTATTTAAGAAAAATCCAAAACACTACTTAAGGTTTACTGCAAAATTGCTTAAATTAGAGTTATAGCCGTTTGGTTCAAGGCTAGTAGTATCAATAGGTTCAGGTGTTTTGTATTTTAGG # Right flank : TCATTTAAATCACCTCCCAATAATATTAATTATTAACAGTTTTATGGTTCTTTCCAATGTTTGTTGAGTAAATATTTAATTTATGATAAAATTACTTATAATTTGATAATACTAAGGAGTTTTTTATGGATGAATTTATAAAATTATTGGATGAAAATCTTGATTACATTAGTCATAAAATTATAGATGATACTTTTTATATACAAGATCAAATAATGATGTTTTAAAGTGGTTAAAGAGTTATCCTAACATTAAAGTAGTTTCTAGAGATGCTTCTATTACATATAAAAATGCTATTTCTAAAGCTCATCCATCTGCGATGCAGATTAGTGATAGATTTCATATGCTTAAAAATTTTACGGAGTATTGTAAACAATATTTAAATAAATATTTTAAATCTCAAGTTATGATAAATAATAGTAATTCTAATAAACAGGAAATGAAAAATATCATAAGTAATTTCCAAAATGAAAAAGCTTTAAAAGCAAGACAAATGTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 4679-5037 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHYY01000091.1 Clostridium botulinum strain 51714-DC contig_91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 4679 29 100.0 36 ............................. GATTTTAATTTTAGTAATGTCGTTAGTATATGATTA 4744 29 96.6 36 .........A................... AAATCAAATGGAGGGACAAGGATGGTATGGTTGTTA 4809 29 100.0 40 ............................. TTTTCTAAGACAACGTTGAACCATAAATACCCGATATATC 4878 29 100.0 36 ............................. TCTACAATAAGACTAAATGCTATTCCAACAACTAAA 4943 29 100.0 37 ............................. GAAGGTACTGGTGCTTTATATAAAGATACTGCTTTAT 5009 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= ======================================== ================== 6 29 98.9 37 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : AGGTTAGTTTTAATCATTTACTAGCGTTAATGATATTAGCATAGGAGAAATATTTGATAATATTTTTGAAAGTGGTGATTTCATTGATTGGATATGAAAGCTTATATAATGAAGACTATTTGCAAATAGGAAAAGGGAAGTAGTTTAGAGTAAAAATGTACATAAATACTTATTTTAATATATATATACAAATATAGAAAAAATTTAACAATAATATTGAAAAATAATTCTTAAATTACATAATTATAGTATAATAATAAAATAGAAGGGAGATGAAGATAATGGAATTCAAAAAATTAGTATTAACATCAAAAATGGCTCATTTTAAAAATGGAATTAATGGAAAAAATCAAAATACTTTTAGAGTTCCTCCCATATCAACCATAGTTGGTATATTAAAAAACATCTATGGCAAAGACATTAAAGATTTTATATTTGGATACACCTGCAAATATGATGGTATTTTTAAAGATGATAGTCAGGCATAATATGTTCTATTT # Right flank : CATAGAAAAACCTTCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAACCTATTGAAATATAATAGATTTTTCACAAATATATTACCTCCCAGAAAGGAGAGAGAAATCAATGAACAAAGCTAATAAAGAAATCATTTGTTCTGGTTGTTGCAGCCATAATCTTTTTAGGTTTGGAAAAGACAAAGAAGGAATGATCACTTTCTTACATTCCCATAGTAGCACATATATATATTCACGACTTTAGTTCAATAATTAATTACTAAACATTTATTATAAGTATCATTGGTATTGTAACTTAATAGGTCATATAACAAAGATATATATTAATATATCTTGAATATATATTAATATATTGGTAAATAAAGGAGAGAAGATATGAGGAAAGTAACGAATATATTGACATCATTAAATTTGTTTATTTTTTCCATATTAATTTTAATACTATAATAGTGCATTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //