Array 1 546010-550313 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMWA010000002.1 Bifidobacterium breve strain BSD2780061688_150302_F6 NODE_2_length_677222_cov_71.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 546010 33 100.0 34 ................................. ATCACCATGCGCAACGCCGGTCACACCACGCTCG 546077 33 100.0 33 ................................. TACAGATATGCGCATCACAGAGAGGGAGCGTCC 546143 33 100.0 33 ................................. ACCGTGGTACTGGACGAAGAAGGCGAAGTCACC 546209 33 100.0 34 ................................. GTCCACCTGCGCCTGCAGCGGGTCGGGCGCGTCG 546276 33 100.0 33 ................................. GACTTCGCGGTAATACCGAGCACCAGCAGCAAT 546342 33 100.0 36 ................................. TGATTTTTCCTTGACCTAGACATGCCTCTAGTATAG 546411 33 100.0 35 ................................. CCGACGTGCATATCACGAAACTTGATAGGGTGCTG 546479 33 100.0 35 ................................. ATCGAACATGCCGAACGTGTCGATAACGATAACGA 546547 33 100.0 34 ................................. ATATCCGCCATATTTTGGGCCAACTGGTTTGAAA 546614 33 100.0 34 ................................. AACGTGACAAGCCTTGTCAGGGGAGAGAAGTAGG 546681 33 100.0 37 ................................. AAGGTCGGCGGCTACGCCTACTGGGCCCCCGCCGGCA 546751 33 100.0 32 ................................. CCGATTCGAACGGGAATTGGAAATACCGGGAT 546816 33 100.0 35 ................................. TCTTCGAGTATGGTGTACATGTTCGGGTATTGGAC 546884 33 100.0 35 ................................. TCTCAGACAGTTCGGGTCGGGTTCGAGGTTGTGCA 546952 33 100.0 35 ................................. TTCGCCGGACAGTACGGCAACGGCGGCATCATGCA 547020 33 100.0 35 ................................. GACCAGTCACCCAACCGGTCGGAATACGTGGGCAC 547088 33 100.0 36 ................................. ACATCATCAATCATCATCCAACCTCCGGTATGGCAA 547157 33 100.0 35 ................................. GGCTCATCGAGGCCGACCACCAGTACGCCGGTAGT 547225 33 100.0 34 ................................. GGGTCGATGCCGCGCTTCCACAGCTTCGGGTTGA 547292 33 100.0 34 ................................. CACCGGACAAACGATTGGAGGCCATCATGAAGGC 547359 33 100.0 33 ................................. TTGGCGATGGTGGTCGCCACGCCCAGCGGGGAG 547425 33 100.0 35 ................................. TCCCCGTATGGGGGTATGAGGGCGAACGCTTGGAA 547493 33 100.0 34 ................................. TCAACATGATTCGCAACGAGGCATCACCCGAATA 547560 33 100.0 36 ................................. GCATTCAGGTCACGGATCGCGTACCAGATGGGGCTG 547629 33 100.0 34 ................................. ACCCGTGAGGAGTTTCGAAAGGTCATCGCAGCCG 547696 33 100.0 33 ................................. ATGCCGAACTCGTCGTGCCAACGGCCCGGCTTC 547762 33 100.0 38 ................................. TTGACTTCGTTGTGGGTGACGTTGATCGGGATGTTGAC 547833 33 100.0 34 ................................. TGCGTCCACCACAGTTGCCTGCTGATCGCGATGT 547900 33 100.0 33 ................................. ATCTCGCCACCGTCCTCTGGTACTTGTGTGCCG 547966 33 100.0 34 ................................. TATCTCGAAATGGGCGGATTGCGTGCGATGGGTG 548033 33 100.0 33 ................................. ATTAATGGGCGTCGATTGCCGGTGAAGTTTGCG 548099 33 100.0 35 ................................. TCGACATCCCGCAGCGATACCGCAATCTTCGTAAG 548167 33 100.0 33 ................................. TGGTCGGAGATCCACCCGAATTTGGAGGCATCA 548233 33 100.0 35 ................................. CCAGTCTTGAAAACGTGCAGGTCGATAATCTGCCC 548301 33 100.0 35 ................................. ACTGACGCGATGACAAAAATCGACAATCAGATGTA 548369 33 100.0 35 ................................. CACCATAACGAAGCCATCGCAATAGCGTTGGTATT 548437 33 100.0 36 ................................. CGCTAAATAACAGTAAAGGAGTAGACCAATGTCAAC 548506 33 100.0 35 ................................. AAGAAGGAGAATCTCTATTGGGGCAGCACCGTACA 548574 33 100.0 34 ................................. GATGCGCAGGTGTCCAACGTGATTAATCGGGGCA 548641 33 100.0 35 ................................. CGGTAAACTATGAGTCTTATGCGTTGCGCAAGTCA 548709 33 100.0 35 ................................. TAATGGCGTTTTCATTTACGCCAACCGTGCACGAA 548777 33 100.0 35 ................................. ATAGGATGTAACGCACATGGATGGGGCACAGGATA 548845 33 100.0 35 ................................. ATATATATTCCGTTTTCGTTGTATCCGAATTGTAT 548913 33 100.0 38 ................................. TCGCGGTGTTGAAGACCGTCACATGGGCGCAACTGTCA 548984 33 100.0 35 ................................. CCCGACAACATGCGCTACCTTGGCGGCGAGGTCAC 549052 33 100.0 32 ................................. TGCCACGGGTAGAGATGCACGTGGAGGAACTT 549117 33 100.0 35 ................................. CCATTGTTGCGTGTTGTGGAATGGCGTGGTTTATT 549185 33 100.0 34 ................................. AGACTGTTTATCGCGCGTCTCACGCGCTTGCGTT 549252 33 100.0 37 ................................. TGATACGGCGTATTGACAATATCATGCGAAAAATCAA 549322 33 100.0 36 ................................. CCTGATTATGAATTTCGGACAACCAATAAAATAGCC 549391 33 100.0 37 ................................. ATCCCGGTCATCGAAAAAGCGGTGGAACATATCGCCG 549461 33 100.0 35 ................................. AACGCGACCGTGCGCACCATCATCTACGTCGTGAC 549529 33 100.0 32 ................................. GTCAAAATGTTGCGGGCGGACACCGATTACAG 549594 33 100.0 36 ................................. AAACTCGGCAGCAATGCCGCACCGTGGGGCACGCGC 549663 33 100.0 36 ................................. GCCTACCTGAGCGAGGACACCGCAGGACGGCAGATG 549732 33 100.0 36 ................................. ATGGTGATGATGATTCCGAAGAACATGCTGATGACC 549801 33 100.0 35 ................................. ATCGGTGTTGCAGTCTATCCGTGACCATATCGCCA 549869 33 100.0 36 ................................. AACCTCCTGTCCGACTATGGCGACGCGGTGGTGCGC 549938 33 100.0 36 ................................. CCAATCCACGGTTCGACCGTAACGGCGCCTCGACCG 550007 33 100.0 36 ................................. TCCACTTGGATTGCATCAGCCGTGACACCGACCCGG 550076 33 100.0 36 ................................. CATTGTGAGTGTAATCGGCAGTGTTGGTTTTCCCAT 550145 33 100.0 35 ................................. CAAGTTCGTGAAAACATTACAAGCGGATACCGATT 550213 33 100.0 35 ................................. AGTGGATGTAGCGGACGCCACTTCCGGCTGCGGCC 550281 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 64 33 100.0 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : GAAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGACTGCCAGCCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTACGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGTAAAGGATCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGGTGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGC # Right flank : TAGTGCTTTCCTGTCCTTGTCAGCAGGTGTGTCTGTTCAATAGAAAGTGGGCCGTGTGAGCGTGTGGAAAGTCTCCAGATGAGCGGCAGGTTTTAGTCCATTTCAGCGTGTGGCGAGAAATGAACACCGGCCCGTCCTGCCCGTACTAGTTTCCCGAGTCGGAAGCAAACCATTCGGTTTCTCGGGAAAGGAAAGGAATGACGGTACCGGTGTCCGTACAACAACGTATCAGGGTGCTTGACGCGCATGGCGTGTCATGGAGAAGCATCGCAAAAGAGGTGGGCGTGGCCCGCGACACGGTCGCGAAATACGCCGGGAGGGAGGATTGCTCTCCCAAGCCGGAGCACTCCGCATCGAGGCCGTCGAAGCTCGACCCGTTCAAGGCGACGGTCGACGGGTGGCTGGAGGCGGACCGGTTCATGCCGCGCAAGCAGCGGCACACCGCCAAGCGCGTGTACGACCGGCTCGTTTCGGAGAGGGGCTACGGGGGCGCGTACTCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //