Array 1 328124-332286 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCO01000001.1 Aggregatibacter kilianii strain PN_522 NODE_1_length_484943_cov_60.4514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 328124 32 100.0 34 ................................ CTGAAAATGTAGCTTATATATTAAAGATGTTTCG 328190 32 100.0 34 ................................ ATCCGAACTATTGTGCTTTAAAAACTCCGCAAGA 328256 32 100.0 33 ................................ ATCTCTTCGTGCTTTATATAGCAACTTGGATAG 328321 32 100.0 34 ................................ ATCATAAGAAACTGATGCAGGAGGAGATATATAA 328387 32 100.0 35 ................................ TTGTATACTCTGCACTGGTCGAACGACGTCCCAGT 328454 32 100.0 34 ................................ AGGCGTTCCAACAACCAACCGGTGGTCACCTTGT 328520 32 100.0 35 ................................ CTTTATCTGTCGTTAGACTATACACTTTGGCGTGG 328587 32 100.0 35 ................................ CACCTTGCGCATCGCTTTAATGGCTTTCCACAAGT 328654 32 100.0 35 ................................ TGCATCGGGTCGGTAAAATAGATAATCGACCCCGC 328721 32 100.0 34 ................................ GTCGAAGGCACACGAGAGATGACCGCGAACAAGT 328787 32 100.0 35 ................................ TACGCCGAAGGTGATGGCTCAGCGCTGATTATTGA 328854 32 100.0 36 ................................ GTCTATTGTAGCCATTAAAACCTCAATCTAAAAAGG 328922 32 100.0 35 ................................ TTTACAAATTCTAATTTCCCAATAGCAGCATATTG 328989 32 100.0 35 ................................ ATCGCAAAGTTGTTGAAGCCTTCAATAATTTCAAG 329056 32 100.0 33 ................................ CGGATACCAAATAAAATAATAAAAATAAAATGC 329121 32 100.0 33 ................................ TGGTTCTGTGGTTAGGGTTGATGGGAATCCTAG 329186 32 100.0 35 ................................ TCCACCTGCTGATAATGGAGGTTTTGACACTTCAA 329253 32 100.0 34 ................................ CTATCGTAAGCCAGTCAATATGAAAATTCATTTT 329319 32 100.0 34 ................................ CCTTTACCATCACCGGAAGATGAAGAACCATTGC 329385 32 100.0 35 ................................ TTTACCTAATTTATCAATGATATAGCCTGTTATTG 329452 32 100.0 34 ................................ GATATTTTGAGTAACTATGCCGTCACTTGTCGTT 329518 32 100.0 33 ................................ GGATTATGTTACAATTCGTAGCGCGGTAAAATC 329583 32 100.0 33 ................................ ACTATCCCCATCTTTTACTATATTAGGATTTTG 329648 32 100.0 33 ................................ TCGATGAAATTTAAAGACTTGAGCGAAGCTGAA 329713 32 100.0 35 ................................ AAGATCGCCCAAGCGATCCGGTATGGACTTACACA 329780 32 100.0 35 ................................ CACACAATTTTGCGTTTTTCCACTTCCGTTGCTGT 329847 32 100.0 35 ................................ TTTTGCTGCGGGTTATGCAGACGTTGCCGGAAGCA 329914 32 100.0 36 ................................ ATTAAAGACCGCATAGAAACAACTTTTTTGATGTCC 329982 32 100.0 35 ................................ ACAATAAGAGAGACCCTAGGCAATGCCTAGGGTTT 330049 32 100.0 36 ................................ AAAGGGCATCGGTTTAATGAATCAACGTGGCGACTT 330117 32 100.0 34 ................................ GCGCGGATAAACAAGCACCATTACAGACTTACCT 330183 32 100.0 35 ................................ CAACCATGCCAAAGTCAAAAATAGAACGAATCACG 330250 32 100.0 35 ................................ TAAGCCACGCAAGCGCACCATCATTTCCTGACGGC 330317 32 100.0 34 ................................ TCCCTATATTAGCCCGCTTTAGCGGGCTTTTTTT 330383 32 100.0 35 ................................ AGAATCGGCGAATTGTGCGGCAGAATATTTATGCT 330450 32 100.0 35 ................................ CCCAAGTACGTGATCGGGAAATAATCGTTGTTTAT 330517 32 100.0 38 ................................ GACTATGACCGCGTCCGAACAGCTCGAAGCCATGAAAG 330587 32 100.0 35 ................................ ACGGCTGATCGGGATTGTGCGGTTGCGGTTGCTTT 330654 32 100.0 35 ................................ ACAATCTCCGGCGGACGCAATTCAATGTGAAATTT 330721 32 100.0 33 ................................ TCGGAGTTTATAGCCCCGTGAATATGGGTCTAA 330786 32 100.0 36 ................................ TTTGTATAGCCCGATCCCTTCTAACGGGTTCCCGCT 330854 32 100.0 35 ................................ AGAATCGGCGAATTGTGCGGCAGAATATTTGTGCT 330921 32 100.0 34 ................................ TGCAATTAAGCTGTCTGATAATGATAGTTTTGAT 330987 32 100.0 36 ................................ CGCTCGTTGCGCGGATAAAAGTGCGGCCTGTTTTTG 331055 32 100.0 34 ................................ CATTTAGTGCTGAGTGTTCTCAACTTGCCACTCG 331121 32 100.0 35 ................................ CATATAATCCAAGCTAACATACCGCTGAAAATCAG 331188 32 100.0 34 ................................ AATAAGGAGGCTTGACATGAGCAAAATCATCGAA 331254 32 100.0 33 ................................ AGCAGGGAAGAAATCACGCTTAGCCCACGTTCC 331319 32 100.0 35 ................................ GGCGTAAGTGTCAAATTTAGAATCACTTGTCATGA 331386 32 100.0 35 ................................ ATATAAAATAACGGAGGCACAACAATGACATTTAA 331453 32 100.0 37 ................................ TGGCCCCCTTTGATTGAATTGCATTAAGTAGCTCCAA 331522 32 100.0 35 ................................ TAAACAAAAATAGGAGAAACATAATGAATCAAGAA 331589 32 100.0 37 ................................ TGGCCCCCTTTGATTGAATTGCATTAAGTAGCTCCAA 331658 32 100.0 36 ................................ AAGTATTGAAATTATGCCGAACTTTCGCAATAGCGG 331726 32 100.0 34 ................................ GTTCGTCTCGCGGTCTGAACCCGGTGCGGTCAAC 331792 32 100.0 35 ................................ TCATCAATAAGACGTTGTGCATCTGAGAACAAGGG 331859 32 100.0 32 ................................ GCGCCGTGCTCAATCTTGGCAGTGCAGACAAA 331923 32 100.0 34 ................................ GGGTGTAACAGAACGCCCCGAACTTCTTCGAGCG 331989 32 90.6 35 ..........T..G.T................ GCCAAAGGTGACCGTGGCAAGGCACATGAAATCGC 332056 32 90.6 34 ..........T..G.T................ CAGTATTTAAGTTAAGGTGTTTAAATTTTATAAA 332122 32 93.8 35 C......T........................ AGGGTACCACACCACCCCGCCGTGCCAGCCTTTAT 332189 32 93.8 34 ..........T..A.................. TCAAAGTAGATCACAAAGGTGGTGAGCATACCGC 332255 32 96.9 0 .......................A........ | ========== ====== ====== ====== ================================ ====================================== ================== 63 32 99.5 35 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAACCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTGCGTCATATCGCAAAACATTGCTTAGATTACGGCGTACGCGCGCAATATTCGGTATTTGAATGTGATGTCACGCCTGACCAATGGGTCATGTTGAAAAACAAACTGTTGGAGACCTACGACCCTACATGTGACAGCCTGCGTTTTTACCATTTAGGCAGTAAGTGGCGCAATAAAGTGGAGCATCATGGGGCAAAAGGGGCAGTGGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGCTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATAAGTTAATTTATTTGTATAACGGCGGTATGGCCGTTATGCTTACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATCTGCTGATTTTTCTTGCTTTTTTAGCTAGGGA # Right flank : CTAACGCTTATATATCAATAAGATCAAGTAAGATCGCAGCCACCTTTGGGTGAGTATATATTTTGTCTTTACGAAAAATAAGTGATGTATAAGTTTCAAGCTTTTCTGCAAAAACGTCTGGAAAATCCACCGCACTTTTCTTTCATAAAAATAAAAAGCTGAACCTCTTTCGAGATTCAGCTTTTCTTTTTGGGTTAGATCATTTTAACCGCTCTTTTTATTTATCTACGCTGAAATATTGTTACATTTTCGGAATTTCAACGCCTGAAGAGAGCAGGTCTTGAATATCCGATTTCAGTACATCAGCTTTTGGCCCATAAATGGCTTGAATGCCAGTGCCTTTGACGATAAAACCCATTGCGCCTGCTTGTTTCCAAGCCGCTGCATCGCCCACTAATTCAGGATTATGCACAGTGATACGTAAACGGGTCATACAAGCATCTACCTCGGCAATATTGTTTCGTCCGCCAAGAAGATTGATGATTTGTACCACTTGCGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //