Array 1 19906-17958 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALLH01000040.1 Streptococcus suis 8830 Contig00042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19905 36 100.0 30 .................................... TGTAGAAGCCCGTTAAAAGATACTTGCCCA 19839 36 100.0 30 .................................... TTCCAAGCTTTTAGAAAGCCTGTCAGAAAA 19773 36 100.0 30 .................................... GAACATTTAGTGATTCAATCAAAGGAATGT 19707 36 100.0 30 .................................... GTCCATAAAGAAAGGAATCCCTAAAATGTG 19641 36 100.0 30 .................................... CCCGAATCACTCGCCGTAAGAAAGCTACTC 19575 36 100.0 30 .................................... GAGAATTTGCAGGTTGGTGGAAACAATCTA 19509 36 100.0 30 .................................... CTATAATCATCTAACTTAACCTAGTCATTG 19443 36 100.0 30 .................................... TAATATAAATAAGGAGGAAACTACAAATGG 19377 36 100.0 30 .................................... ATCATGTCTATTGCAACTTTTTGAGTATCT 19311 36 100.0 30 .................................... TATCACTCTGGTTGTTCTGGCAGCCTGTGG 19245 36 100.0 30 .................................... TGTTTTGTACTGCCAATGACCGTACTCAAG 19179 36 100.0 30 .................................... AATGACTCAAAAAATAGCGGAGTAAATGCG 19113 36 100.0 30 .................................... ACAGCCACATCTACTTTGACGACGATGGCT 19047 36 100.0 30 .................................... ACCAGGGCGACGTTGAACATCACAGTACAT 18981 36 100.0 30 .................................... TAGAAACTAAAAATAAATCTATTGATAATG 18915 36 100.0 30 .................................... GAGCATTCTGATCGCCCTATTACTGATTCA 18849 36 100.0 30 .................................... ATATAATCAATATATCAACAAAGAAAGGAG 18783 36 100.0 30 .................................... CATTGAACTGTGGATTTTAGCAAGAAAACG 18717 36 100.0 30 .................................... CTATTGAACCTTGCTAGTCAAGTATGGTAG 18651 36 100.0 30 .................................... GTTAGTGGTCGGTATCCTTCTACTTGTCAT 18585 36 100.0 30 .................................... GCAAGCTCGGAAACGCGTTGCAAAACATAG 18519 36 100.0 30 .................................... TGTTTCAAGATTGATTGTCATCTAATACCT 18453 36 100.0 30 .................................... GAATTGTTAAGAAATGATAATCAAAATGAG 18387 36 100.0 30 .................................... AATTTTTATTTTTATTATATCAAAAGAAAG 18321 36 100.0 30 .................................... CGAATACTGAATACATGCATGACTGGCTAA 18255 36 100.0 29 .................................... TACAATAGTTTTTGTAAATGATTGAGTTA 18190 36 100.0 30 .................................... AATATGGCGAAAAACCAACACGTCGTTCCG 18124 36 100.0 29 .................................... TATGTCAAATAATCTAAAATACTATATGG 18059 36 100.0 30 .................................... TGGCTTATGCAGAGTGTTTGGGCAAGGCTA 17993 35 83.3 0 .......................T..T.-....TCA | T [17969] ========== ====== ====== ====== ==================================== ============================== ================== 30 36 99.4 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAAATTTAGATGATTACCTAACTTACGATTCTTTTGTGAGAATAGCACAGTATTTAGAGGAACTTAGTAATAAGTATCCCTATTTCAACACAATCTTGTTTCCTTCTCAAGAGGGCTATTTGTACTTGACCGAGGCAACGCTTGAGACTGTTAATATTGTGTCTGATAGAATTGAACACTACCCTGCTTTCACGTTTCTCTATACTCGTTATCAGCAGTCATATCCCTCAACTAGCCCACTAGGTGAAAAAGAATTTTTAAACTCTTTGAGAAAAATCAGTTCCTATTTATTCTCTTCAGACATTAATAGAGTCGTGAGCTTAGCAGACATAGACCTAGTAACTCTAAAGATAGTTAATTCACTTTATCAGTATGATATTAAGATGGTATATATGTATAAAGGAATATCAAAATTAGAGGAAAATTACCTTTCTTCCTAAATTTGACAAGTTTTTCGATAAATATTATAATTACGGAAGAGAGTACAAAAACCATTTGAG # Right flank : TAAGCGATAGTACATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCCTACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATCACAGGCGTAACGACCTCTCATGCCACGGCTGAGCACGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGGGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGATTGTCGATGAGTTTAAGGTGGTTCAAACCCTAGGAGCCTTCAAGTTGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //