Array 1 1101623-1097825 **** Predicted by CRISPRDetect 2.4 *** >NZ_LS483408.1 Streptococcus uberis strain NCTC4674 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1101622 36 100.0 30 .................................... AGATGGAGTTAGCGGTGCCGATGGTTTACC 1101556 36 100.0 30 .................................... TTGTTTATTTAAGGTATTATATTTTCTCAT 1101490 36 100.0 30 .................................... AGCTTTTTATGCAACTGGAAAAAAACCAGA 1101424 36 100.0 30 .................................... AATTGTACTGATGGCTAGTGTACTGTTTTT 1101358 36 100.0 30 .................................... GCAAAGAAAAAAATCAAAATGCACTGCTTG 1101292 36 100.0 30 .................................... TCTGGCACTTGGTTGCTTATTTGGTTGATT 1101226 36 100.0 30 .................................... TCTTCTAAAAGTGGCTTTAACAGGTCCATA 1101160 36 100.0 30 .................................... TTTCATCAGCCATGTTCTCAATCATCTTCT 1101094 36 100.0 30 .................................... CTCCGATTGATGTATTTGTTCCTGAGTATT 1101028 36 100.0 30 .................................... CATCGATTTGTTTGTTTTTTACTTTGAGTT 1100962 36 100.0 30 .................................... ATAGATGCAGATCTAGACGCACGCAATGCA 1100896 36 100.0 30 .................................... AGGATGCCTACAGCTAAAGAAGTAGTCGAT 1100830 36 100.0 30 .................................... AGACAACACTTCGCGACGGTGACGAAGAGA 1100764 36 100.0 30 .................................... CAATCGATTAAACCACTGCATGGTCCGTTT 1100698 36 100.0 30 .................................... TGGTTTCTTCGTCACATTCACGCCCAGTAC 1100632 36 100.0 30 .................................... TATGTTAAGAACGGCGACAAAATATTCGCT 1100566 36 100.0 30 .................................... ATTATCACAGTTATTGCGACGAGTTATACT 1100500 36 100.0 30 .................................... TGGCGAATTGCGTCAAGAATTGGTTTGCAT 1100434 36 97.2 30 .........................A.......... TAGCTAAGGCATTCGGTACTGAAGCGCAAA 1100368 36 100.0 30 .................................... TTTCATTTTTTTGTCAGTTTATTTTCGACG 1100302 36 100.0 30 .................................... CAAGAAATCCGAAAAGATTTTGACTGGGCG 1100236 36 100.0 30 .................................... AACTCAGGTACAATTTCATACAATAATGCA 1100170 36 100.0 30 .................................... ATAGGTATGTCGAAGTGAGTGGTTACGGAC 1100104 36 100.0 30 .................................... CAGTAAATTATCCGCAAGCATTTTGCCAGA 1100038 36 100.0 30 .................................... TCTATCCAACCCAGAAACAGCTAAAGGTCT 1099972 36 100.0 30 .................................... ATAGACTATTTAGTGCCTTTTCAACAAAGT 1099906 36 100.0 30 .................................... AGATTACGAAAAAATTAATCAAGAACTCCA 1099840 36 100.0 30 .................................... GTTTTTGTTGTGATTGAAGCGTTTAAGTTA 1099774 36 100.0 30 .................................... TTCATGATACAAAACAATCATTAAAAAAAT 1099708 36 100.0 30 .................................... TCCATCACAGAACGTTTACTAAAGCTCACA 1099642 36 100.0 30 .................................... TAAATTCTATAGTAGATAAGGTTTCCTCAG 1099576 36 100.0 30 .................................... AAATAGAAGACTATTGTAAAGAAAGACTTC 1099510 36 100.0 30 .................................... CAGCAATCAGCAACCGCAGTTTGTGCTTTC 1099444 36 100.0 30 .................................... CATTCTAGACCGCATCAAGCAGTCAACGGA 1099378 36 100.0 30 .................................... GGAATAGACGCATGCAATATTCATATTGGT 1099312 36 100.0 31 .................................... CACCTGAGGAGACTGTTTTATCTGTTGTTGG 1099245 36 100.0 30 .................................... TCCTGATTTGCCACCTGCAAACTCAGACTG 1099179 36 100.0 30 .................................... TTGTTATCCAGCAATTTCTTACAACTTAGA 1099113 36 100.0 30 .................................... TCTTCCAAATTCTCAATCATTTCATAGATT 1099047 36 100.0 30 .................................... TTTTAAAAATATGCAACTGTATCCATGATT 1098981 36 100.0 30 .................................... ACAACGCAGAAAGACCGGTTGCGGTATATG 1098915 36 100.0 30 .................................... ATCAACTGTTAGTATGCCAACAGCGACAAT 1098849 36 100.0 30 .................................... AGAACAGATGAAAAAAACGTGTGCGATTTG 1098783 36 100.0 30 .................................... TTGGCATACTGCCTATGCTAACTCTGCTGA 1098717 36 100.0 30 .................................... CACAGAAATGTTAATGGTCGTGATGTTACT 1098651 36 100.0 30 .................................... CCATAACGATCGCCCATATCATATCTAACT 1098585 36 100.0 30 .................................... ATCTTCAAATGGTTTTGAAGTATTTGCCAC 1098519 36 100.0 30 .................................... AGATTTTAGTAATTATATTGGTCAAAAGTT 1098453 36 100.0 30 .................................... CTGAGGTTCTTGAGGCTAGCGCAGAAATTG 1098387 36 100.0 30 .................................... TTGGTCAGAGATTAAAGCGTATGTTGATGC 1098321 36 100.0 30 .................................... ATGAAATCATAGACTTCTTGATAGTCGTTT 1098255 36 100.0 30 .................................... AAGTACGAAAGGGAGGCAATTTTGGCAAAC 1098189 36 100.0 30 .................................... AACCAACGCCTCTTTCATTTCGACAGATAA 1098123 36 100.0 30 .................................... ACTTACAGTATTATCAAGACTTGCTGGTAA 1098057 36 100.0 30 .................................... ATCACACCGCTCTCACTCAAGTAAGCGACT 1097991 36 100.0 30 .................................... ATTTAATCATGTCGAAGGTTGTCATTTCAA 1097925 36 100.0 30 .................................... ATGGAAATAACCACTCAAACTAAGAAAAAA 1097859 35 83.3 0 ................G....AT....G..-....T | ========== ====== ====== ====== ==================================== =============================== ================== 58 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Left flank : AAAAGCCAGAAGTTAAATCTATGGTTGATAAACTTGCTGCAACAATTACAGAATTAATTTCTTTTGAATGTTTGGAAAATGAACTTGATTTAGAATATGATGAAATAACGGTGCTCGAATTAATAAAAGTATTGGGTGTCAAAGTTGAAACACAAAGTGATACAATTTTTGAAAAATGTCTTGAAATTTTACAGGTCTATAAATACTTAAACAAGAAAAAATTACTCGTTTTTATCAATACGGGTTCCTATTTGAGCGAAGAAGAAGTGGAACAATTGTTTGAGTACATTTCTTTGTCGAATCAATCTGTTTTATTTTTAGAACCACGGAAATTATATGATTTTCCGCAATATATTTTAGATAAAGATTTCTATCTTATGCCGCCAAAAGTGGTATAATAGTAGTAGAATATATCCCAATTAATGGAATCTTTCAAAATTGAAATCCTGCTAAGATGAGTAGCGCGATTACGAAACTTTTTGGAAAAATTCTTCCACGAG # Right flank : TACATAAAACAGCCACTTTCTAGAGTGCCTGTTTTTTCTTACTTTTCTTATTTTTGCATGATTTCTTTGATTTTGTGTGACTTTATCCAGTCTACTGTTTAAAATGTATAATTATTAATAAAATGGTCTTGAAAATGTATATCAAAAAATGCGTTTTCAGGGTTTTTCTTGTTTTTTTGATGCTTTAAACCCTATTAAAATAGGATTTTATAGTAATTAGATTTTTTAGTCAGTTTTTTCTTTGCAAACCCTTACATATGTGTTATAATGAGAAAAAATAAGAGGAGAGATTCCGATGGAAAAAACATTTTTTATGATTAAGCCTGATGGCGTTCGTCGTGGTTTGATTGGAGAAGTGCTTCAACGCATTGAAAGAAGAGGGTTTACTCTTGATGCTTTGCAGCTAGTTACTCCGAGTCGTGAGCATTTGGATGAGCATTATCATCAATTGAAAGATAAAGCTTTTTATCCTGGTTTGATTGATTATATGATGAGTGGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGATCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //