Array 1 6340-1742 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNQ01000007.1 Salmonella enterica subsp. diarizonae serovar 48:i:z strain SBO27 contig7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 6339 29 100.0 32 ............................. AACTGATTAACTTTAACGGCGGTACTTTGTGC 6278 29 96.6 32 C............................ CGCCAATCTCCAGTCGAAAGGTGCCGGGTGTG 6217 29 100.0 32 ............................. GGGCATGAGGGTGACTTTGATCCGGAAGAACT 6156 29 100.0 32 ............................. GTTACGTCTGTCCCCCTGAGCCGGATTTGTTC 6095 29 100.0 32 ............................. AGTTTTGTGCGGGGTGGATGTCCGGTACACTG 6034 29 100.0 32 ............................. GCAGTGCTCAGCGCCTTTGCGGCCCAGTACGT 5973 29 100.0 33 ............................. GTTTGAGCGCCTTCGGACGTTGCGTTACCTGAA 5911 29 100.0 32 ............................. ACTGCTGACCGCCGCCCGGTAAAACTTTTACA 5850 29 100.0 32 ............................. GCTACGACCGACAGACCATTATTGACCTGGTA 5789 29 100.0 32 ............................. CGCTGCGGGAGGATGTGAAATACCCGTATCAG 5728 29 100.0 32 ............................. AATTCATATATATTAACCCTGTTATTTTTCCG 5667 29 100.0 32 ............................. CGCGGTATCTTTCTGATTGGCACCGCCAAACA 5606 29 100.0 32 ............................. TTTGATAGCAAAGTTCATTGTCCTGCCTCCTC 5545 29 100.0 32 ............................. AGTACCTCTGACAACGTGGTGCGCGTGGATGC 5484 29 100.0 32 ............................. ACGGCAAGGCGACTACTAAATGGTTTTTCGGT 5423 29 100.0 32 ............................. AACGCCAGTTCATCACGCGCTACCTGGACAAT 5362 29 100.0 32 ............................. TGTTCCACGTTAACCCGCGCGCCGTACACCGT 5301 29 100.0 32 ............................. CTTACACTGCCTGCTGCTCAGTGCCCGGTATT 5240 29 100.0 32 ............................. CGATCGAGAAGGTCAGCGTGTGACTGCGCCAC 5179 29 100.0 32 ............................. CGACCACGCTGTACCTGGATAATACGGACGAC 5118 29 100.0 32 ............................. GATTTAGGCGAAAGCGCCGATATTGGGTCAAA 5057 29 100.0 32 ............................. GGACAAAAACTGGCCGGAAGAGACGAAGCGAA 4996 29 100.0 32 ............................. GCTTTTCGCTTGCTGGCAGGCTACAGATGGCA 4935 29 96.6 32 ............................T CAGATAGAACTGATCTCATTGCTCCCGCCATA 4874 29 100.0 32 ............................. CAAATTGACAGGCTTAAAATTGATACGCAGGA 4813 29 100.0 32 ............................. CAATATTTCTTTCCCGCCAGTAAAGCCCCTCC 4752 29 100.0 32 ............................. TGTAGTTGACTGTGCTCACGAATTGTGAATAA 4691 29 100.0 32 ............................. GGTAATTGTGTTCCGCTGGTATTTGATTTTAA 4630 29 100.0 32 ............................. CATGAATATCAGCCAGCAACTCAGCGATTATG 4569 29 100.0 32 ............................. AGTCTCATCAAATATCGGACAAACCTGATGAA 4508 29 100.0 32 ............................. GCTATGGTCTGCTGCTTGAGGGCGTTGTTGAT 4447 29 100.0 32 ............................. CATTCTATAACCGACTTATTAATAAAGGTAAA 4386 29 100.0 32 ............................. CAGAACAATCAGGCGTCAATGCTTCTCTTGAA 4325 29 100.0 32 ............................. GCATCAGCCAGCGCGGCGTCGGCTGACACAGC 4264 29 100.0 32 ............................. CGACGGGAAGGTTTCGAAAATCTGGATTGTGA 4203 29 100.0 32 ............................. AATTTAAGCGCGTATCCGGCTATAACGGCGTA 4142 29 100.0 32 ............................. CGCTTATACATCACAGAACCCCTTTAGAAGTG 4081 29 100.0 32 ............................. TCACATGCAGTTCCGGCGGTCGCTGGATTTTA 4020 29 100.0 32 ............................. GTGGGGAATTTATCAACGCCGGTGTTGGTGGA 3959 29 100.0 32 ............................. GCTGCGATTATGGCACGACATGCCAAACGACC 3898 29 100.0 32 ............................. TCAACGGATTTTACCAGGTGAGCGCGGACAGG 3837 29 100.0 32 ............................. GATTTCTCGTTATTTCCGAACAAGCCGGATGA 3776 29 100.0 32 ............................. AAAATAAGGACTCCCTGTTTTTACCGGTAGTA 3715 29 100.0 32 ............................. ATTTGTGCTACTGGGGCTATTCGGAGTTTGAA 3654 29 100.0 32 ............................. TTAGCAATTTTGGCAATCTTGAATTTGGTTTC 3593 29 100.0 32 ............................. TGGTGAAAGAGGTCGAAGAGAAATACGTGCAC 3532 29 100.0 32 ............................. TCTTCATATACTTTTATAAAGTCCGCGCTTTC 3471 29 100.0 32 ............................. GAACGACGACACCACGCAGTGGGATAACATTA 3410 29 100.0 32 ............................. GTGAGCATCAGGTTCTACGCATTAGCGGCCAA 3349 29 100.0 32 ............................. GCTATTGTTGAGGCTGACGGCGAAGAATTTAA 3288 29 100.0 32 ............................. CCGCAGCGGGGTCAACTGGCGGCGTTTGAGGG 3227 29 100.0 32 ............................. GTTATCAGCCTGTTTTTATATGTGGTGGATAT 3166 29 100.0 32 ............................. GCAAAAAAAACCGCCATACGCCGCCTGTTCAA 3105 29 100.0 32 ............................. CGGCGTTAACCGGCACACTGACCGGGGAAAAT 3044 29 100.0 32 ............................. CCATTACGCACCTTGAGCAGCCCGGTATCACC 2983 29 100.0 32 ............................. ATAACGTGAGGGCGGCACTGCGATACAAGGTA 2922 29 100.0 32 ............................. ATTGATTATCTCGGCCATCTGGTCGGGGTGTT 2861 29 100.0 32 ............................. CCGGACGAGGTACGCGCCAAGCTTTGTAAGGC 2800 29 100.0 44 ............................. GCACCGGCAGCGCCTACGGCGTCTCGCTGGCGGAACAGCTCGGC 2727 29 96.6 32 ............................C GTAACTGCTGCGGGGCAACCATACCACCATAG 2666 29 100.0 32 ............................. GATAACTGTACCGACTCGCCCCGTACAGACAA 2605 29 100.0 32 ............................. TCAGCCAGTTCAGCACGAATGAAATTAGCGAT 2544 29 100.0 32 ............................. GTATCGGCTGGGGTGTCGATATTCTGGAAGAG 2483 29 100.0 32 ............................. AGCACCATAGGTATTTACGTAGAGGGGCAAGA 2422 29 75.9 13 ...............A..T...A.G.TAT TCACGGCGCAGTA Deletion [2381] 2380 29 100.0 32 ............................. CGTCTGGGGGTTTTTGTCCCTAAGCCGACAAA 2319 29 100.0 32 ............................. GTGAGTCCGCCTTCAGCCTGAACTCGCTGATA 2258 29 100.0 32 ............................. GCGGTAATTCGTTTACGGTGAATATAGGCGGG 2197 29 100.0 32 ............................. TGGATACCAGCCGTAGTGCGTGATAGTGACGA 2136 29 100.0 32 ............................. GCATAGGCTCATTCTGTTCTCGCGGGAACGGA 2075 29 100.0 32 ............................. GTGCTATGCTGTCCCGTATTTTTTCCCGTCTA 2014 29 100.0 32 ............................. ACGGTGCAAGCGGTACAGTAAAATACACCTGG 1953 29 100.0 32 ............................. AAAATATCCCACAGATTCAGTACGCGTGACCG 1892 29 100.0 32 ............................. GCGTGAGGTTTGTTCTGCGTCTGACGGTGGGG 1831 29 100.0 32 ............................. CTCTATAGCCTCTTGTTTTTTAAGTCTAACGG 1770 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================ ================== 76 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AACCGTTCAGATCCAGCCAGTAAGCACGCACGCCTG # Right flank : AAAGCAGTCTAAATCCCCTTAGATACACCCAGTAGTTGTTACTGCTGCCAGTGTCATACCTGTTGTGGTCGGCGCTGATATTATATGGGGTATCCGGGATATGGAAATCACTGTAATTCACAGTCTGCTGCATACAGCCCCGATTATCCTTCTGCAGGCTGTAACTCACCTGACGGCTGTCGTCACACGGAATACTGAAACCACCATTCCCCACCTGCGCCAGTTCATACCATTTCATCAGCTCAGCGGTTCCCGGCTCGTTTTCGGCGGTTGCCCATGGATCCATATCTTCTTTAGCTACAGGCTGGTAACCCCTCGTGTTTTACCTCAAAAAAAACGCCGCCTTTATCCATCGACAACACGGCATGCCATGTTGCATCCCTCTACTCATTGTGCAGCCCCATTGATAAGGTTCTCTATTGGTACAGAACTACCTGTCAGATTAGGTTTGGCTATTGCGCAATAGATGTGTCAGGTCAAATCTGAGCTAATATACGTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3566845-3563098 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVNQ01000004.1 Salmonella enterica subsp. diarizonae serovar 48:i:z strain SBO27 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3566844 29 100.0 32 ............................. GATGAATGACGCGAGGCTGATGTTTGCAGAAA 3566783 29 100.0 32 ............................. TCAGACGCCCCTTTTTTGCCGATCTCATACAC 3566722 29 100.0 32 ............................. GACGGGCGCCGGGTGGAATTTACCGCAACCTC 3566661 29 100.0 32 ............................. ACAGTTGAGCAGGCCCGCGAACTACTGGCGGC 3566600 29 100.0 32 ............................. GTGGTCTGATGTTGTCGAAACTGACGGCGAAT 3566539 29 100.0 32 ............................. AATCTCTTAAATTCCAGTCGGTTCACCTTGTC 3566478 29 100.0 32 ............................. GTCGCATCCGACATAGTGAAATGGCCTTTAGC 3566417 29 100.0 32 ............................. TCTGCACAGGGAAACGCAACGAAAAGCGCGAA 3566356 29 100.0 32 ............................. CCATCATGGCTACGACCCCAACAAAAAAACAC 3566295 29 96.6 32 ............................A CCACCTTCAACACTAACACCAGAAACCAAACC 3566234 29 100.0 32 ............................. TTCAGATCCAGCCAGTAAGCACGCACGCCTGT 3566173 29 100.0 32 ............................. AACTGATTAACTTTAACGGCGGTACTTTGTGC 3566112 29 96.6 32 C............................ GGCGATACCGCGCACTGACCCTGACCGGAACA 3566051 29 100.0 32 ............................. ACTGACAAACAGCGTGAGCATATCGCGCAACT 3565990 29 100.0 32 ............................. GCTGGCGGTTCTGGATGACCTTTGTCGAGAAA 3565929 29 100.0 32 ............................. AGATAGACCAGCAGTGGCGTCAGGCTGATACC 3565868 29 100.0 32 ............................. AGAACGGCTGCGTCATTCCGCTGGAGGCTACC 3565807 29 100.0 32 ............................. GCTCTTTTTTCAGTAACACTGATGCGCCGCCG 3565746 29 100.0 32 ............................. CCAGCACAGGGTGCGTGCGTGTGCAAAGCGGC 3565685 29 100.0 32 ............................. GTGATATTCACGATCGAGGTATCACTGACAAT 3565624 29 100.0 32 ............................. CGTCTTTAAACCAGCCGTTGCCGGATCTTGAT 3565563 29 100.0 32 ............................. TAATCAAGAAAGCTGTCGAGTTTATTTCTGGT 3565502 29 100.0 32 ............................. GATACAGGCAGGTATTTGAACAGGCGGCGTAT 3565441 29 69.0 29 ....................NNNNNNNNN NCTTTCTGGAACAAATATATAGATTTAGT 3565383 29 100.0 32 ............................. GATGAATGACGCGAGGCTGATGTTTGCAGAAA 3565322 29 100.0 32 ............................. TCAGACGCCCCTTTTTTGCCGATCTCATACAC 3565261 29 100.0 32 ............................. GACGGGCGCCGGGTGGAATTTACCGCAACCTC 3565200 29 100.0 32 ............................. ACAGTTGAGCAGGCCCGCGAACTACTGGCGGC 3565139 29 100.0 32 ............................. GTGGTCTGATGTTGTCGAAACTGACGGCGAAT 3565078 29 100.0 32 ............................. AATCTCTTAAATTCCAGTCGGTTCACCTTGTC 3565017 29 100.0 32 ............................. GTCGCATCCGACATAGTGAAATGGCCTTTAGC 3564956 29 100.0 32 ............................. TCTGCACAGGGAAACGCAACGAAAAGCGCGAA 3564895 29 100.0 32 ............................. CCATCATGGCTACGACCCCAACAAAAAAACAC 3564834 29 96.6 32 ............................A CCACCTTCAACACTAACACCAGAAACCAAACC 3564773 29 100.0 32 ............................. TTCAGATCCAGCCAGTAAGCACGCACGCCTGT 3564712 29 100.0 32 ............................. AACTGATTAACTTTAACGGCGGTACTTTGTGC 3564651 29 96.6 32 C............................ GGCGATACCGCGCACTGACCCTGACCGGAACA 3564590 29 100.0 32 ............................. ACTGACAAACAGCGTGAGCATATCGCGCAACT 3564529 29 100.0 32 ............................. GCTGGCGGTTCTGGATGACCTTTGTCGAGAAA 3564468 29 100.0 32 ............................. AGATAGACCAGCAGTGGCGTCAGGCTGATACC 3564407 29 100.0 32 ............................. AGAACGGCTGCGTCATTCCGCTGGAGGCTACC 3564346 29 100.0 32 ............................. GCTCTTTTTTCAGTAACACTGATGCGCCGCCG 3564285 29 100.0 32 ............................. CCAGCACAGGGTGCGTGCGTGTGCAAAGCGGC 3564224 29 100.0 32 ............................. GTGATATTCACGATCGAGGTATCACTGACAAT 3564163 29 100.0 32 ............................. CGTCTTTAAACCAGCCGTTGCCGGATCTTGAT 3564102 29 100.0 32 ............................. TAATCAAGAAAGCTGTCGAGTTTATTTCTGGT 3564041 29 100.0 32 ............................. GATACAGGCAGGTATTTGAACAGGCGGCGTAT 3563980 29 100.0 32 ............................. CTTCTGTATCGGAATCGCTGATTGCCTGGTAT 3563919 29 100.0 32 ............................. GCTGGAAATCCTGGGGAAACCGCACCGCAATT 3563858 29 100.0 32 ............................. ACTACAGCCCCGACTACCCCGGATGCGGTGTA 3563797 29 100.0 32 ............................. TCGGTGACGGCGGCGTTGTCGGTGATGGCCGA 3563736 29 100.0 32 ............................. TCGTAAACCGAACCATCACGCAGAAGCGCGTA 3563675 29 100.0 32 ............................. CATCTCAAGCAGGGGTTTACGGATACTGTCAG 3563614 29 100.0 32 ............................. CATTGGTAACGCCATTTATTGCTGGAAATGGT 3563553 29 100.0 32 ............................. GGTATTACTGGATTCAGCATAACGGTGTTGTT 3563492 29 100.0 32 ............................. CAGGCGTTATCAGATGAGCAGCGACTTCAGAT 3563431 29 100.0 32 ............................. TAATAGCCGTTAATCAGGGTACGCAGACGGAC 3563370 29 100.0 32 ............................. GCGACTATCGATTTAACAGGTAGATCGTCAAG 3563309 29 100.0 32 ............................. ATGATTTTCTCCTCAATTACCCGCTATAATAC 3563248 29 96.6 32 .............T............... TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 3563187 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 3563126 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 62 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //