Array 1 5839-7616 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRD010000084.1 Calothrix sp. FACHB-156 contig84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 5839 37 100.0 34 ..................................... AAAACAAGTGATTGAGGAGCATGGAGAGGAGTAT 5910 37 100.0 38 ..................................... ATCAATAATATTGAGGACTGGAACCACATCCGGCTGAT 5985 37 100.0 36 ..................................... TGCTTCCTGGGCGTTTTGGCAGCAACCTTGTAGTTT 6058 37 100.0 34 ..................................... ATGCAGCTGTAACAAAAATACCCTGAGAGAGAAA 6129 37 100.0 37 ..................................... AATTAATGCTGTAGGTGACGATGTTACTGAGGTAAAA 6203 37 100.0 34 ..................................... ACTCCAACCAGCAGTTTTTAAGGCTTTTACAGAG 6274 37 100.0 39 ..................................... GCAAAATCCGGCTTGGTGGAACATCTAGCGACGGGTGGA 6350 37 100.0 36 ..................................... ACGAGAACCGGAGGTAGGTACACCTTAAGCCCCTCG 6423 37 100.0 39 ..................................... CCAATGACGGTACGGACTGGGCTTTATATGCAGACGAGA 6499 37 100.0 34 ..................................... GAATAGCAACGCAACGTGGTTCCAGTCTTTAATC 6570 37 100.0 42 ..................................... AACCACCTGCTAGCCCCGCCAGAATGACCTGTAAGGCGTGTT 6649 37 100.0 33 ..................................... AAAATTGATTGAACTAGCCACCAGCTTAATAGC 6719 37 100.0 35 ..................................... AGGGATAGTAGATGTCGAGGCAAGAGCGTTATAAA 6791 37 100.0 32 ..................................... ACCAGGAGAATAACGCGCGTTACCTCTAGCAG 6860 37 100.0 42 ..................................... CCAAGTTATTCCCCCGAAACTATGGAGAGAATATGTGCCAAT 6939 37 100.0 32 ..................................... ATTTCAGTATCTCCTGTTGACGAATGTGTAAA 7008 37 100.0 33 ..................................... GAGTTGTCCATGCTCCACCATTGTGAGGGCAAG 7078 37 100.0 32 ..................................... TCGTTCCCCCTAGGGGGATGTCTGCGGAAGAC 7147 37 100.0 37 ..................................... TTTAGTCTTGAAACGCGATTCTTTCCCCGTGCCGATA 7221 37 100.0 32 ..................................... CAGACCCCAGATGTATCAACGCTTGACCCTTC 7290 37 100.0 38 ..................................... TCGTTCCCCCTCGGGGGATATCTGCACAAGACCGCAGA 7365 37 100.0 33 ..................................... AGAGGATGAAGGGAACGAGGGACGAAACGAGGC 7435 37 100.0 36 ..................................... TAGCTTCACTCCCTGCTATTAAATCAATGGCAGCAG 7508 37 100.0 35 ..................................... AAATATTTGTCTGCTTCATCACTAGAAGAAAAAAG 7580 37 94.6 0 ...................T....G............ | ========== ====== ====== ====== ===================================== ========================================== ================== 25 37 99.8 36 GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : TCTAGCCCGTAGCTGCCAGCTTCCAGAGCGCTTTGGACTTCATCTGATGAAAAGTTAACGCCGATGCTAACTAATGCTCGCTCGTATTTTTTGAAGATTTCGTATTCAATCGAGTCCTTTTCCCACAACCACACTCAACTATCTCCAAACAGTTAATCTCAAGTGTTCTTCACTCCATCATACTTTCAAGTTTATCTATGAACCATGATTGCTCTGGTAAAGTTGAGCGTACCAAAGGTATATTGTTGGATAACAATAATATTTTCCTTCCTGAATGCGCGAATAGATAGATGTTTAAAAGTTGATTTCGGCAAATGAGGCTAAAATATTGGCACATAAGACTTTTGGGGCAACACTTCATCAAAGTACCCGCGCACTTTATCTAGACTGGGTTTTCAGCGTTTACATACTGATTAACCATAATGTTTTATGCTATTATTAGCTCATTCGCGCAACAGAACCTTGAAAAGTGAATACAGCTTCTATTTCAGGCTTCCGCC # Right flank : CGATAGAGCAGACAATGCGCTTTTAGCAGTTCTTTACCTGGTCAATCAGGTGCCGCGCTGCGACCTTAACACCATTGAGGATGATTGATTCGGCGATCGCCAAAGCCCGGTTGGCGATGGCTGGGTCACTCGCGTCGTGCAATGCCGATATTAGTCGGTTGGCGGTCAGATCTGCGATCGGTATCAACGTGCCGATGCCGAGTTCCCGCACGCGGTTCGCCCAAAACGGCTGATCGCTAAACATCGGAACGAGTACCTGTGGTACGCCAGCACGTGCGGCAGTGTGCGTTGTTCCAGCACCACCATGATGCACCACCATCGCGACTCTGGGAAACAACGCTTGGTGGTTGACATCACCGATTGCGATGCAATCAGGGGCTTGGTCGATCAGCTTGAGGTCGGCCCATCCTTGCGATATGATTGCTCGTCGCCCGACCGCACGCGCAGCCTCGATGAGGATAAGGCTCGTATCCCCGGCGATTGGCATACTGCCGAAACCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 21225-22618 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRD010000084.1 Calothrix sp. FACHB-156 contig84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 21225 37 100.0 35 ..................................... CACGAGTTGATAGTCTCCCCGGCTGAATCTCAGTA 21297 37 100.0 34 ..................................... GAGGCGAGTGCATTATATACCGTCTGAGTGAGTA 21368 37 100.0 36 ..................................... TGAAGAAGCCGGGTGATTTGGTAGCCCGGTTTCGCA 21441 37 100.0 34 ..................................... GGTAAAAACGTCTTACAATCTCGCCCCAATTCAT 21512 37 100.0 34 ..................................... TATTAAGAAACTTACAGCAATCAGGCGAGAGAAA 21583 37 100.0 34 ..................................... ACTTGAGATTCTCGCCAATCAATTTTTAATTCTT 21654 37 100.0 34 ..................................... GATTATAGTTATTTGAGAAACCCTAACCCAACAA 21725 37 100.0 34 ..................................... GTAGCTCACTGTAGTGCTATCGTCTGCTGCTTCA 21796 37 100.0 35 ..................................... TACGGATGGACATCCTGGATGATTGCGGGGATGAC 21868 37 100.0 36 ..................................... CCGAAACTTTAGCAGAGAAAGCATCTCAAATATCAC 21941 37 100.0 33 ..................................... AAACACATGGCTGATTTGTTATCTGCCGATGTG 22011 37 100.0 34 ..................................... TTCAGGAACATCACAAACAAAGGCTTGAGAAGGC 22082 37 100.0 35 ..................................... AGCTGGGCGACCCCGAAAACTAACTTGGAAATATC 22154 37 100.0 34 ..................................... CTATCGTACAAGCTGATGAATTTTTACATTTAGT 22225 37 100.0 35 ..................................... TTGTACCATTTATCATATTGTTTCTGGGTATGGTA 22297 37 100.0 34 ..................................... AAAATCTATTGCAACTAGTCCATTGCCTGTTATC 22368 37 100.0 35 ..................................... ATTCTCTTCCGCTTTTAATAGTAGTTTTTCGATAT 22440 37 100.0 34 ..................................... TGGGGTTGTGAGTTGGAATCCTGGCTCAAGTATC 22511 37 100.0 34 ..................................... GTTGCGTCCGTGGCTGCATCAGCGGCATTAAAGA 22582 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 20 37 100.0 34 GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : TGAATGTTGTTATCTCCTACGATATTTCCGAAGACAAACGCCGCACCAAGATTCATAATATTCTCAAGTCTTATGGGCAATGGGTGCAGTATAGTATTTTTGAATGTCAGTTGAATGACACGCAGTACGCCAAACTGCGAGCGCGATTGCATAAGTTGATCAAAACTGATACGGACAACATCCGTTTTTACTCTTTATGTAGTTGCTGCTTTGGTAAGGTTGAACGTATTGGCGGCGAACCAGTCCCCGATGATACTATTTTCTTTGCCGAATGCGCGGATGGGTAGGTGTGGAAAATATAGTTTCACCAAAAATTAAATGAAACTATTTCTACTTAAGGCTTTCAACCATTCACTGTTGTCCTATCACCCGCGTGCCTTACATAGAAAGACTTTCAGTCATTTTGGTTTTGCATTTTTACTATTGCTCATGTTATTATGGCGCTATCCGCGCTCCAGAACCTTGAAAACTGCATATAGATCAACTTTCAAGCTTCCGCG # Right flank : CAAAGTACCTCTCAAACCCGCATTTCTCACAAGCAGCAGGGCAGGTTCACAGATATGATCAAATATTCACGACGATCTCGCTTAACCCACCCCTACTAACAACTCACAACAACTCGTAGTCCGGACTTCAGTCCTTACCCTGAGGATTTTATTTACGATGACAAACTTATTTAAGGCAGAATAAACCCATATCGTTCGAGGAAAGCCTTAGCTTGACTGCTAGATAAAAACTGCACAAAATCCTTAGCAGCATCCGCATTTTTACTACCTTTGAGTACAGCCACCGGATAGATAATTGGAGAATGGTATTTTTCATCAGCCACTACCACCACTTTTACCTTGTTAGAAATTTTGGCATCAGTGGCGTAAACTAAACCAGCATCGGCGTTACCACTTTCTACAGACGCCAGCACTTGACGCACGTTGTTAACATAAACCAACTTTGATTTTACCTGTAGTAGAATGTTCAATTGACCGAGGACTTGCTCCGCGTATTGTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 80687-81166 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRD010000043.1 Calothrix sp. FACHB-156 contig43, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 80687 37 100.0 35 ..................................... TAAACTCGCAAATGCCAAGTTTCAAGCCCCTGTTG 80759 37 100.0 37 ..................................... CATCGAGTCCATTCTTTTCGGCATTGGATAGGAGTGA 80833 37 100.0 37 ..................................... TCGGGAAGACCGCCGTTACATCCTTAATAAAGTCAAC 80907 37 100.0 39 ..................................... CGAAGTATTTCATATTTTTGATAACCCACAATAACAAGC 80983 37 100.0 37 ..................................... TCTGTTATCTCTCGATACTATGGTGGAAGTTTTTTGT 81057 37 100.0 36 ..................................... CTCACTGTCACTGCTATCTACAAAATCCCTGTGCCA 81130 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 7 37 100.0 37 CTTTCAAGCCACCACCTAGCAGGAGGGTTATTGAAAC # Left flank : GGTCAGCGGTTCGAATCCGCTTAGCTCCATATGTACATTAAATTATTATTGTCAGTTTTAAAGAATTATTGTCCAATTTGGCAAATTGATAGGACATAAGTGACCTATTGTTAAAGCTTTTAGCTATTAATCTAGTTTTAAATAATTTTTGTCCAGGGTTGAAACCAGTTTTAAATAATTTTTGTCCAAAATAAAGGCAAGCTTACCGTCAGATACATAGACTGTAGATCTATTGTGCAAGCTCAGTATAAATAGCACAGACTCTGGCAATATGCCATTGAAGTGCTCCTTTCAAACCACCCTAATAAATAATTCTACGATAGAAGACTATAAAAAGTGAAATTACTGAAAATTTAGCGCTCAAAATATTTCAACCCACCACCTAGCAGCTATGCATTACCCACATCTTTCTTTACAATCTTAAAACCCTTGTTATATAAGCATATTAGAGAATGAGAGGTTTAAGCAGACTTGAAATCTTGCCCTCATGACTGGCTAAT # Right flank : CCCTTACCTTCAAAATGCTTATCTCTACTGACTTCAGCAGGCGATTTTGACAAGTCTACTTAAAAACTAATTTTCTACAGTCAATAAATAAACTTTGATTCGCCTTGAAAATTCTAAAATTCAGTCAAGATAATAGTTTTAGCAATTTGGCATATCCCTGGGGATTTTGCCCCCGCTTTGACTTGCCAAAAATAAAAATTAGGGGGTGGTAGTTCGGCAGCCACCGTGACGGTATACCCGTACCCTTACTTTGTTATAAAGTAAGAGGTAGTAGTTCCTCGTAAAACCAAAATCTAAGATTGTGGTAATACAGACCGCTCTGGCACCCAACACCAAGCTGAAAGAGTTTGATGTCAAGAGCAAAGGTTCTGGGCTGTTTGAAACCCTAACACCTAATACTTCCCATGCGTCTCGGTGCGAGTCCTTTCTCATCTAATAGCAGCATTTGCTTACCTAAACAATTACGGGAGCAATGCGGTTTTGTCAGATCCAGTCAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAGCCACCACCTAGCAGGAGGGTTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 54094-54494 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRD010000048.1 Calothrix sp. FACHB-156 contig48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 54094 36 75.7 37 G...T..T.T........A..-....CAG........ CTAGCGGTGCTTTTGATCGTCCCGCGAAATCATTTGT T [54106] 54168 37 97.3 35 .................A................... TCCATTGCATTACTCCAAATCTGACGCTATGATGG 54240 37 100.0 34 ..................................... CAAGCTATTTGCGGCGATACTTGTGCTGCTCAAA 54311 37 100.0 36 ..................................... TAAGCAGACAACCAGAGCAGTTGTGTTGTACGAAGC 54384 37 100.0 37 ..................................... CAATTACCTCAATCGATGAAGGGTTGCGCTCATCACT 54458 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 95.5 36 CTTTCAACCCGCCTCAAGCTGTGAGGGGTATTGAAAC # Left flank : TTTAGCTATATTGACAATTTCCAAAACTGGATCATGAATACCTTGCGCTACGGCTTCGGTAAAAAACCACCCCGCCCTGCATCCAGCGAACATGAAGTCATCAGCCTCCCATCAGAGCGGGAAAAATCTGCTTCTTAAATTCAGCCTTGGCTGATTATGGTATAATAGCAGCTAGTTATAGCTTAATGACTAGCTGCATTTTTGCGGGTGTAATTCAGTGGTAGAATGTCACCTTCCCAAGGTGAACGTCGTGGGTTCGAGTCCCATCACCCGCTTTTTTTTCTGTCGATTGCCAAATTATTTGTCCGCGTTGACAAATTGTTGTCCGTATTGACAAATTAGTGTCCTCTTCAACAACAAGCTTGCCCTTATTTAATTCTATGCTGAACCTGAATCTACGGAACGCAATTTTAATTCAGTTTCTAGAAGCATAGAAATTGGGAAGGTGACATTCCTTTCAACCCACCTCTTTATTTTGAAATGCTACATGAAAATCTATA # Right flank : CACCAGCGCCTCAAATCCTTCACTAGCAACGACTCCAGAAGCATTTTTGTCAGAACTGCCAAAATCGCCTGTCACTTAACACTTGAAAAAGTAAATTAACTGACACGATGAAAGCTACAAGCCTTAATCAATAAGCGATTTGAAGTTTTGGCATATCCCTAGGGAAATTGACCCCGCTTCGATTCGCCAAAAAATAATTAAGGTGGGTTCCTCCTTGGTCGGAGGTGATTGGGTAGCCACCACTGCGGTAAACCCGCACCTCTATTACTGGGGGCGCACCTTATTCCTATCCGTAAAGGATAGCAGCATCAAGGTGGGCAGCTACCAGGGTCAGAAAGCAAGACTGTCTTCCAACAGTCAAACTAACCCACATTTTCACAGTACAGCGGCTTTATACAAGCATGAACTGCGGCGCTATTTATTGATACTTATTCTATTTTCAAGGTTCGGTATTTTGTCAATCAGGTTTTTTGGCGGGAATGATAAGCAGCGATCGCTAA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCTCAAGCTGTGAGGGGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA //