Array 1 504061-505553 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPJZ01000001.1 Salmonella sp. S118-65274 NODE_1_length_684254_cov_147.391, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 504061 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 504122 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 504183 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 504244 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 504305 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 504366 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 504427 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 504488 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 504549 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 504610 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 504671 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 504732 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 504793 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 504854 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 504915 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 504976 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 505038 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 505099 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 505160 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 505221 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 505282 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 505343 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 505404 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 505465 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 505526 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 521685-523588 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPJZ01000001.1 Salmonella sp. S118-65274 NODE_1_length_684254_cov_147.391, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 521685 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 521746 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 521807 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 521868 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 521929 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 521990 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 522051 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 522113 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 522174 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 522235 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 522296 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 522357 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 522418 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 522479 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 522540 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 522601 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 522662 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 522723 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 522784 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 522845 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 522907 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 522968 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [523010] 523010 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 523071 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 523132 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 523193 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 523254 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 523315 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 523376 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 523437 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 523498 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 523559 29 96.6 0 A............................ | A [523585] ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //