Array 1 59791-57661 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOJU01000021.1 Vibrio cholerae strain MGL845 NODE_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 59790 28 100.0 32 ............................ CATCCCCGCTAGACCTGTTAATAACCCGCCCG 59730 28 100.0 32 ............................ GAGTGGATATAGTAGGGATGTGCACATAAATA 59670 28 100.0 32 ............................ ACGGCATACATCAGAACAAGCGCCGCTTGCTT 59610 28 100.0 32 ............................ AATTAGTGCACTCAGTGGCAATGGCCTACTAA 59550 28 100.0 32 ............................ TCACAAGCGAACGTCCACCACAACCATTTTAG 59490 28 100.0 32 ............................ ACATCAGGTGTGTGGATTACGGCGACACAAGT 59430 28 100.0 32 ............................ AGAAGATGTATTACTCACCACCCCTTGATAGT 59370 28 100.0 32 ............................ ACAAAAGGGAAGTGGATCCATATTCGTACATG 59310 28 100.0 32 ............................ TCAGCAACAGGTTCAGGCGGTGGTTTGGTGGC 59250 28 100.0 32 ............................ ATTAGAACAACAAGTAGAAACACTGCAATTTA 59190 28 100.0 32 ............................ TAAAGATTCAACATGCTTCTTTAGGTAATCAT 59130 28 100.0 32 ............................ TTATGGACCTACTGGAGCTGCGCCGGATTTAG 59070 28 100.0 33 ............................ CAAAAATCACAGGCGCCATTGACAAAATCATTA 59009 28 100.0 32 ............................ CTACAGCGATGAGGTGATTCATGCGGGCATTG 58949 28 100.0 32 ............................ TTACATACTTGGAATTTGGCTCGGTGACGGGA 58889 28 100.0 32 ............................ ATTCTTGCGCGCGGAATATTTGTCAACTGCAC 58829 28 100.0 32 ............................ ATACGGATTAGGTCACGCATCGACGGTCCGAT 58769 28 100.0 32 ............................ GCATTCGGGGTCACAGCACGCACAATACAAAT 58709 28 100.0 32 ............................ CTATACCGTAATGGAGCAAGGTGGGCGGGGTA 58649 28 100.0 32 ............................ TGAACGGATCAGCGCGATCGCTTGTTCTTCAA 58589 28 100.0 32 ............................ TATTAGTGTTGCAACAGTTCGCCGAATTTATG 58529 28 100.0 32 ............................ TTACCTGTTTGGCCGGTTTTAGGGTCAAAATA 58469 28 100.0 32 ............................ AAGCCGATCACAGCGGACTTGACGGTTTGAAT 58409 28 100.0 32 ............................ GTTTACAATGCGTTCACCTTCGATTAGTAAAT 58349 28 100.0 32 ............................ ACCTACTAATGGTATAATTTTTCGACTCATAA 58289 28 100.0 32 ............................ AGTTCGCAGAGCACCACCGACTGACCTCAGAA 58229 28 100.0 32 ............................ TTCCCCAATGCAACAAAGCCTGTTCATTATCT 58169 28 96.4 33 ........T................... ATATACGCGGGGAGACAAACGTGAAACCGTGCG 58108 28 100.0 32 ............................ GAACCACAATGCCGCGGCAATTCCATTGAGGA 58048 28 100.0 32 ............................ TTCCGCTTTGCCTTGCCTCCGCACATGGTCAC 57988 28 100.0 32 ............................ TGCTGATTATGAAATCGCCGTTGATATTTACG 57928 28 100.0 32 ............................ TGTATATTTGGCATCACCATAGCAGCGGTCAG 57868 28 100.0 32 ............................ GTATCGCTTACGTCGATAACGTCTGAGACTTC 57808 28 100.0 32 ............................ GATCAAATCGCATTAGCTAAGCGCGGCGTGTT 57748 28 100.0 32 ............................ CATAAATTCAAGTTGCCGCGCTTTGTCTGGTA 57688 28 89.3 0 ...........C.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGTAACTTACGTAAGCTTTGTACGCAAGCATGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAATCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCCTTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //