Array 1 235307-238224 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRA01000005.1 Siphonobacter curvatus strain HR-U HR-U_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 235307 30 100.0 36 .............................. GATCTTCCGGCAGGGGGGCAAGGGCTCCGCGTCGGG 235373 30 100.0 36 .............................. GTGGCGGGGTCCATGATCTGCCAGTTGGGAGCAACC 235439 30 100.0 35 .............................. GGTCAAGACCTGTCACCATCGGCGTTCTTAATAGG 235504 30 100.0 36 .............................. GATTTCGAATGCCCCAACGTTTGATCAGGGCGTTCA 235570 30 100.0 35 .............................. AAAGTAAAACCGACGTATGGGTTACATACGCCGGA 235635 30 100.0 35 .............................. GGCAGCACAGATAGTTTCAGAGAGACTTACTTCTA 235700 30 100.0 36 .............................. AATACCGTACTGACTTACGGGCATTCCCGAGATCGT 235766 30 100.0 36 .............................. ACTTAAGTCTTGATCAACTCCGGAGAATTGAAGCAA 235832 30 100.0 36 .............................. TAGGTGCCCCTTCAAATGACGATGTTCCGTTGTCGA 235898 30 100.0 35 .............................. TTTCTTCAGCTGCACGCCGATGACTATCCGGGCAG 235963 30 100.0 35 .............................. ACTTAAGAAAAACAACCCATGACCCTAGAAGAATA 236028 30 100.0 36 .............................. GTGGCAAATCTTGGCTAGGTAATATTAAGAAAGAAT 236094 30 100.0 36 .............................. CGTAATGCTGGGTTTTTATTCGATTCGTGAATGAAA 236160 30 100.0 35 .............................. TAGGCTGTGCGTTTGTTCGCTTTAACACCTCTTTC 236225 30 100.0 35 .............................. AATTTATTCTTTACCTGCGAATTCCCACCGACGAG 236290 30 100.0 36 .............................. CTGTCAGCTGGCCAATCGCACTAACGGTGGCCTGCA 236356 30 100.0 35 .............................. AAATCGACGAAATCCAGGCCGAGTACGAGATCAAA 236421 30 100.0 36 .............................. TCTACTCATCACCAAGACGTGTTACGGAGCCAATGC 236487 30 100.0 36 .............................. AAGGATTCGCCGAAAACGCGGATAAGCCAACGCCCT 236553 30 100.0 36 .............................. TGTTGGGGGATTTAGTGTATGCCCTATTCCCAGGGC 236619 30 100.0 35 .............................. TTGTTCTCTAATTGGATAAACATCTACACCCCACA 236684 30 100.0 36 .............................. CGTAAGCCGTATAGGCTATAATAGGCTTGGGAAAGT 236750 30 100.0 35 .............................. CCGATAAGGCTACGAAAGGTATGCTGCCCGTTCGG 236815 30 100.0 36 .............................. ATAGTCAATGAGGTACCAGTTCAGATTCATGATTCA 236881 30 100.0 36 .............................. GATATTGGACGACCCGACGGGTAGCCTGGTATTTCT 236947 30 100.0 36 .............................. CTGATCTGAAGTACTACGGTGATGCCGCTGAATACA 237013 30 100.0 36 .............................. CTGGTGAACGTGGGCAAGGAAGATGCCATCGTTGCC 237079 30 100.0 35 .............................. ATTGGGGGAAGGTAATATCTGCGATTCGGATACCT 237144 30 100.0 35 .............................. ACAGTAAGCAGTGGTTTCGCTGGGCGGCTCAGGAT 237209 30 100.0 36 .............................. TAAACGGCTGGTTGCCAATGTAGCTTTTCCAGCGTT 237275 30 100.0 36 .............................. CAGCTTTGGGGCTATTACGATGTGCCTTGCGAGTGT 237341 30 100.0 36 .............................. GTAATCTATCTCCCATTTGACGTAGTGCAGGTGAGG 237407 30 100.0 36 .............................. CTAATTGTTCTGCTACTGTCGGCCCCATAGGGTAAT 237473 30 100.0 35 .............................. TCGATTAAAACGTGTCCGACGATATGAATACCCTT 237538 30 100.0 36 .............................. TATTTTGAAATGATCTCTTTGGCTATGGTAGATAGG 237604 30 100.0 36 .............................. AGAACTAAATGCTCACGGTTGAGTTTACGCTTAGGG 237670 30 100.0 36 .............................. GAAGCTACAGTGAAAGAGCGGGTGGATAAGGGACTG 237736 30 100.0 35 .............................. CAGAGTCTTTCCCGCTTGAACATCGGTGTTCGCTA 237801 30 100.0 35 .............................. AGATAAAAACCTCGAAGCTCTTGACGAGCAATACG 237866 30 100.0 36 .............................. AAGCAAGCAAACGTTACGGTCGCTCAACTCAAAATC 237932 30 100.0 36 .............................. TAGGGGAAGGGGGCGGCGGAACGGGGTTGGGGTCAT 237998 30 100.0 36 .............................. TAGTAAACCAGGTGGAAACGGCCCGTAATAAAGAAG 238064 30 100.0 36 .............................. AGCTGATAGGATCCTCCTACATCATTCAGGAAGGGG 238130 30 100.0 35 .............................. TTACCAGGGCTTTGACGGGTTCTGGGGCATCGGCT 238195 30 90.0 0 .............A......T....A.... | ========== ====== ====== ====== ============================== ==================================== ================== 45 30 99.8 36 GTCTTAATCGTACCAGAGTGGAATTGAAAT # Left flank : CAATAAGTAAAAGGAAGTCACTATGTATATCATTCTGGTTTATGATTTTGGGCAGAAACGCGTGGGGAAGATGCTGAAGCTTTGTCGGCGGTATCTGAACTGGATCCAGAATTCCGTCTTTGAAGGCGAGATGACCGAAGTACAGCTGAAAGAGATGTTGCACGAAGCCAAACGCATCATGAATGAAGAGCAGGACAGCCTGATTCTCTTTAAAAACCGGGATCAGAAGTGGATGGACAAGCAAATCGTCGGCATCGAGCGGCAATCAACTGACGATTTTTTGTAGGATTGCATCGTCGATCGACTGATAGGGCTCACTGGCAGTCACCTCTTTCTGGCATTCACTACCCTTGTATTTGCATAAGTCCCTGATTATGAGGAGTCGTCGATCGACGGGTATTTTCATACCTTTGGAGATCGACGATTTTTCAGTTTAATTTCGGAAAAACAAACCCCGTACAGAGGCCTGAAAAGGCCTTTTTTACCTATTTCCGAATGGG # Right flank : TAAGCTCATAACTGAGAAACCTAATATTATTAGCCGTACGAATTTTATTTGGGAATTAAAGACCACCGTATATAAATATACGTAAAATGAAAGTGTAATTAAGCTCAGCTAAGTAGTGGTTGATAATGTATGGAGTGAACCATGCGAGCTTCCTTTGCTGAAGTATATCTCTTCCCCAAATGTGCCCCTAGCTGACTGAATCAGTCAAAACCCTGCGTAAGGGCTCATTATAAGTAAACATAAACTGTTCACACCGATTCCAGACCTTACGTTTAAAGAATAAGTAATCGAATTTGAACTATTTCCCATCCGATTCCCTTATTATTTCGTACCTTTACGCAATAACAGGTTCCTGCCTTTGCTTTTTCTGATATAGTTTGGGATTATTCTTTCCTCTATCAACAGTTTTCGCTCTCTCAGCTACCACCATTTATTCCACTTTAAACTGGATTTTCGGGCGTTACCCGCTAGAAACCAGACGTTTTGAATTCTTTGATTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCGTACCAGAGTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 795967-794228 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTRA01000001.1 Siphonobacter curvatus strain HR-U HR-U_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 795966 30 100.0 35 .............................. GAGCCAGTGACTCAGAACTTGAAACCTACTTCGGA 795901 30 100.0 36 .............................. TCCTGACCGATACCAGGCAATCGGTGCAGGAGCTGG 795835 30 100.0 36 .............................. AATTTGAACACCGTACGGGTGAGACTGGCGTAATCC 795769 30 100.0 36 .............................. TAAAAATAGAGGATTTGGAAATCAATAGCGACGATA 795703 30 100.0 36 .............................. CGGATAATCAACCAAAACGCATGAGCCTTGCACCCT 795637 30 100.0 35 .............................. AGTGTAGCGATTACGCCGACTTCACTTTCGCTGAT 795572 30 100.0 35 .............................. AAACAGGGCAGTCGGCCATTCAGTCTTTAACTCCG 795507 30 100.0 35 .............................. CTCTACCGCTGAGCTAAGGGTCAATGTTTGTCCGG 795442 30 100.0 36 .............................. AAAGTCTGGAGCATTGTCGCCCAACATGTCGTAAAT 795376 30 100.0 35 .............................. CCCGAAACACTGGAAGGTATATCCGTGTCATTGCT 795311 30 100.0 36 .............................. TGGACGCACTAGGCCAGTCACTATATGCCTTGTATT 795245 30 100.0 36 .............................. AATACCACTGCTTTGACCTGAGGTCCTACGACTGAT 795179 30 100.0 36 .............................. TAGAATCGGTGCCGGTTCGCTGTATTGCTGTAGACT 795113 30 100.0 36 .............................. AAAGCTTACCAAGCTCACTGGCTTTACGCGAAAAAT 795047 30 100.0 37 .............................. TAGGTCATTCCATCCGTTCCCGAAGTAGAAAGACACA 794980 30 100.0 36 .............................. TCCTTCAATGAGGTCGTTAATACTCTCATTGGTTGT 794914 30 100.0 36 .............................. GAGACAGGGCAGCTGCGTTAAACATGTTCTTGAAGT 794848 30 100.0 36 .............................. TTATGAAATCCCCCAGGCCGCCGTTCTGATCGGTAC 794782 30 100.0 36 .............................. AGTGATTTTTAGCGTTTTGAGGTGCGTTCTCTAAAT 794716 30 100.0 36 .............................. CTGACAAAAAAGGCCATACGGCTTAGGCCCGCAGCG 794650 30 100.0 35 .............................. TGCTGGGTCTGTTCCTGCTGGGAACGCCTGCCATC 794585 30 100.0 36 .............................. ACTGATTTTAATCTCGTATTCCTTCACCACGTTCGA 794519 30 100.0 35 .............................. GCGTGACCTCGTGCCTGAATTTCCTTCAGATCAAA 794454 30 100.0 36 .............................. GTTATTTCCTACGCTCAGGTGCAGGCCTCCGTCTAC 794388 30 100.0 36 .............................. TAGGAGCAACCGGGCATTAATTATTAAGTTTCTTAT 794322 30 100.0 36 .............................. GCTGGATTTCCGTCGCCTGCCGCTGACCACTCCGAT 794256 29 83.3 0 ................A.C......-.C.C | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 99.4 36 GTCTTAATCGTACCTAGTTGGAATTGAAAT # Left flank : TTTTATCGTTACGAAGGGCATTTTTTACAACGAAGAAGAACTAGCCAAGTACCCACCGGCCCTGAAATCCATTTACCTGAAGCAAGGGGGCGAAATCATTTTTGACCAGGAGTATACCGTTTTCGGTGAAGTAACCAAGGGCCTGGACATTGTCGACAAGATCGCTCAAATGCCCCTCGGCGGTTTCGAACGGCCAACCGAAATTGTGAAGTTCTCCATGAAAGTGCTGGATTAAAAAAGCAATCTTTTCATCCGTGCATACGCGTTAACGGAAGCTTTCGAAAAGCAGTATCGTCGTCGATCACTTTGGTGAGTTCTCCATACCAGATAAAAACGGCTTAGTTCTGCACTAAGATTTTCATAAGTAACTGATTACTAACAGTCGTCGATCACCAAGGGTTTTCCTATCATTGGTGATCGACGACTATTTTCATATATAGAGTGAAATAAAACTATTACAGGAGATTAGAAAAGGGTTTTTTGGGCTGTAAATTAAGGGG # Right flank : CCCAGCCCCTGCCAAAACCATTTCTAACTAACAAGTCCAAGTCATCTAACCCTTGGACTTGTAGTGAACATCCTCTTAGAACCGTCCGGTTTTGCGTACCATCCGGGCAATAGACTCTTCTTCATTAAGCGTAGTCACGTCTGCAAGCGGAACCCAGCGAATGTCTTTCGACTCCTGATTGATGACGATTGGCTGCGTCGCATCGGCTTCAAACAGAAAGCGTACATCATAATGCAAATGCTCCGGTTCCTGACCCCGGGCGGGGATGGTGTGAATGTCTACATCGAAGATGGTCTCGCTTACAGGCTTTACCGTAACTCCCGTTTCTTCCCAGGCTTCTCGCTGAGCTACTTCCTGTACGTCTGGATTCCCATCGCAGTGCCCGCCAGGCTGAAACCAGCGATCGAGTTTTCGATGGTGCATCAGTAAAACCTGGGTGCGGGTTTCATCTAAAACCCAAGCCGATCCCGTTACGTGACCCACGAGTAAGGTCCGCTCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCGTACCTAGTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //