Array 1 65125-63893 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMC01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10855 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65124 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 65063 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 65002 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 64941 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 64880 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 64819 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 64757 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 64696 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 64635 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 64574 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64513 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64452 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64391 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64288 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64227 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 64166 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 64105 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64044 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63983 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63922 29 96.6 0 A............................ | A [63895] ========== ====== ====== ====== ============================= ========================================================================== ================== 20 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83238-81257 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSMC01000011.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10855 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83237 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 83176 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 83115 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 83054 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 82993 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 82932 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 82871 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 82810 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 82749 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 82688 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 82627 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 82566 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82505 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82444 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82383 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 82322 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 82261 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 82200 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 82139 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 82078 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 82017 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 81956 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 81895 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 81834 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 81772 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 81711 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 81650 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 81589 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 81528 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 81467 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 81406 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 81345 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 81284 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //