Array 1 35700-38111 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDSF010000029.1 Pectobacterium brasiliense strain CFBP8736 Pectobacterium_brasiliense_CFBP8736_contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35700 29 100.0 33 ............................. CATTCGTTTTCCTTTTCCCGCTAGCTCGTCAGC 35762 29 100.0 32 ............................. ATGGGATACCCCTTGTTGAGGTTCCTCAAACC 35823 29 100.0 32 ............................. CGTACACAAGTTCATTTTTCAGTGGCAACGCC 35884 29 100.0 32 ............................. CAGCGCAAACATAGGTTTTGCGTCGTCAATGC 35945 29 100.0 32 ............................. TTGTTGCTATTTCCCGCCTGACTGCCAGCGGT 36006 29 100.0 32 ............................. GGCCGCGATAGGAGATAATCAAGATGAAACAG 36067 29 100.0 32 ............................. CGCGGTCGGCGTGGTGAGGTTACGGCTCTTGA 36128 29 100.0 32 ............................. GGGCATACTCCAGAGATGGAATGGCCAGACCA 36189 29 100.0 32 ............................. ATCGCGCCACGTCCTGAAGTATTTCTATTGCT 36250 29 100.0 32 ............................. TCGCCAAGTCTAAAGAAATGAGCATCGTTCAG 36311 29 96.6 32 ............................T CAAAAAAAATCCCGCCGATTTCTGGGCGGGAC 36372 29 100.0 32 ............................. GCCCAGAACAATAAAATGTGGCCACTTTTAGA 36433 29 100.0 32 ............................. GAACGCCGTGGTTTCAGTCCATCCTCGGAAAA 36494 29 100.0 32 ............................. TTATCGCTGGGTGCCTGAATCGCTGCGCTGCT 36555 29 100.0 32 ............................. CCTGCCGAGTGTCGGCTTGGCTTTTTTGACCA 36616 29 100.0 32 ............................. TCGCCGCAAGGCGCTGCCCACGCACTGAACAC 36677 29 100.0 32 ............................. ATGCCGAGCCACCAGCGGGGTTTATGTTACGA 36738 29 100.0 33 ............................. TTAACGTTATCCGAATGGCAAAGGATTTATAAC 36800 29 100.0 33 ............................. CTGTATTGTTTTGTATTGCGTAATATCGCTCAC 36862 29 100.0 32 ............................. CGTAGGTTTGGCTTTTCTTCTGGCTCCGTTGG 36923 29 100.0 32 ............................. CTATGAAGAAATGAAATTTTTCTGGGTGTGGG 36984 29 100.0 32 ............................. CACGTGGCGCATGGCATGAGCATTCCACCGAT 37045 29 100.0 32 ............................. GATGACGTTATCGAATCCCGCGCCGTTCCCCC 37106 29 100.0 32 ............................. AATGCTCGCACCAAGAACACCTACGACCGCGC 37167 29 100.0 32 ............................. ACTTGAGCGCGTGGCTTGTGTGATGTTAAAAA 37228 29 100.0 32 ............................. GATTATCGGTATAGTTACACTCAATGATGAGA 37289 29 100.0 32 ............................. CGCAACTACTGAATAACTCACCTCATCACCGT 37350 29 100.0 32 ............................. GAACGGAAGAGAAGATAAAATGCCAAAATCAG 37411 29 100.0 32 ............................. CGCGTCGTCAGCCTACTGTATGGGTTCGTCGC 37472 29 100.0 32 ............................. CCATAACCTATCTGATCGGTTTCTTCTTTTGG 37533 29 100.0 32 ............................. CACACCATTGCTGTTCCTCTGTCATCCACATA 37594 29 100.0 32 ............................. GTATTGCCTCTGGTGTTTTGCGCGGAGAGGAA 37655 29 100.0 32 ............................. GTAGGGAGATCATTCATTACAGGAGTTTCCTC 37716 29 100.0 32 ............................. CTGATCGGCTCAAGCGGCGTGGTATGCGTGTA 37777 29 100.0 32 ............................. CGCCTTTCTTTCGCCGCAACTGGACGCGAGCA 37838 29 100.0 33 ............................. GCCTTTTACTGATCTGTACTTGCAGTAATTCCC 37900 29 100.0 32 ............................. CGCTATGTCTATCCGGCATACAGTAATCATTT 37961 29 100.0 32 ............................. TGCAATCAGTGAATCACTCCCACCCTCCAGAC 38022 29 100.0 32 ............................. GCCAGCTATCCTCACCAGCTTCTGCGCGTAAT 38083 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGGGGCATTACGCCGCCGCTGCCGCCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGTTGGTGGTGGTGACGGAAAATGTCCCGCCGCGTTTACGCGGCAGGCTGGCGGTGTGGCTACTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACGTCACAACGGGTGAGGGAAATGATCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGAGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTACGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTATTTTTAGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATGTCCCCCGCACGGAACCAAATCCCGCCTCTGGCTGGCGCGATGGGGGATTACGTGTCAGTATTAAAGCACGCCATTTTTGCACTCATCGTCACAGTGAGGCGCGATGCCAATGATTTTGTCTTCCATACGTTACCCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGTGGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCCGAGCTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGGCGGTTGGGACGTGAAGAAGGTTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCTGAAGGGGGAAGTATTCCGCCTTCCAACGTGTTCCAGCCGAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 156683-153594 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDSF010000031.1 Pectobacterium brasiliense strain CFBP8736 Pectobacterium_brasiliense_CFBP8736_contig_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 156682 28 100.0 32 ............................ GACTGGCAAATGACTTTAAGCAGCATCTTAAA 156622 28 100.0 32 ............................ AGCAGGAAAAACTAAGCGGACACGGACCGCTG 156562 28 100.0 32 ............................ CCGTGGGCAGATTTAGCAGCAGCCGGTTACCC 156502 28 100.0 32 ............................ GATGTTCGTTTTCAAACCCCCGAGCATTTGCT 156442 28 100.0 32 ............................ AATTTCCGATATTACGCCGCATGACATATCAC 156382 28 100.0 32 ............................ ACGGTGGGACCAAGCTCATTCTGAACAGGGCG 156322 28 100.0 32 ............................ AAGATGTAACTCAACTTTTCTGCCTATGCCAT 156262 28 100.0 32 ............................ AGACCAGTTAATCTCTGGCCCGCTCCAGATTG 156202 28 100.0 32 ............................ GTAATTATAACGATAGTGAGTTAGCTGAATTA 156142 28 100.0 32 ............................ TTGTCCGTGACCAATGATGTGGTGCGGGTCGT 156082 28 100.0 32 ............................ TACTTTCGTTACGACTTTAGAACCGTTTGTAA 156022 28 100.0 32 ............................ TGACAAATCACCTATCGATATTCAGCTAGGTC 155962 28 100.0 32 ............................ TCTAGGTCATTTTATGCAAGTGCGTGTCAATA 155902 28 100.0 32 ............................ GTAATTAACATCTACTCAGATGGTTCATTCAC 155842 28 100.0 32 ............................ TCCTGTGCTGCCGTCATTTTGCTGTTCAGACT 155782 28 100.0 32 ............................ GAATTGATAGTGCTGAGCGTGCGATTGAAATC 155722 28 100.0 32 ............................ TGAATACGCGAGGTCAATGAACGGAATAAAGG 155662 28 100.0 32 ............................ AACAACCGGAACAATTGGGATTTTACGGTCGT 155602 28 100.0 32 ............................ ACAATGTAAAAGTGGAACAAAACAGGAAGTAT 155542 28 100.0 32 ............................ TGCGACGTGATGGTGTTACCCTGCTGCGTAAC 155482 28 100.0 32 ............................ ACCCGATTCTCTGATAAGTGAGTTGATGGACA 155422 28 100.0 32 ............................ CTGTAGTTGCTGCTGATAGTAAGCTAGCGTAG 155362 28 100.0 32 ............................ TTTGCTTTCGCTGGGCTTCTTCGCTGTCCGCC 155302 28 100.0 32 ............................ AAGACCAGATGATGCGCCGGCTCGTGTCGATG 155242 28 100.0 32 ............................ AGGCAGAAATGGAGGCCCGCACTAAACGCATT 155182 28 100.0 32 ............................ GTGTCAGCACGGAACGAACCACGCATAGACCC 155122 28 100.0 32 ............................ ACGCGGAGCCTATCGCGTCTCTGACGTCAGCG 155062 28 100.0 32 ............................ GTCTTCATCAACTTCGTAATTGTTCCATAGTA 155002 28 100.0 32 ............................ GTAAGCCACAGCAACGTCTACTCTGGCACCGT 154942 28 100.0 33 ............................ CGACGATGCCCCCGAACTCAAACTGAGCCGGCA 154881 28 100.0 32 ............................ TCTACCAATGGCGTGACAGGGAAGAGTACGAG 154821 28 100.0 32 ............................ GGAGAAGCGTGTACTGGCGAAAGCCGCACGCG 154761 28 100.0 32 ............................ ATGTCCTCATCAGTCAGCAATTCATCAACAAA 154701 28 100.0 32 ............................ TGCTTTTGCCTGAGTAGCTGTGGTGCCGACAA 154641 28 100.0 32 ............................ AGCTTGGGAAGCGTTGATGATGTTCAAGAAGG 154581 28 100.0 32 ............................ AAACGCGGCCAACTGCTGACGAATATTGTTCG 154521 28 100.0 32 ............................ AATCAAATTCGGGTGGCTCACCAGTGTTCCAT 154461 28 100.0 32 ............................ TGCGCCTTTTTATTAGCGGCTGTTTCGTATGC 154401 28 100.0 32 ............................ TCTGATTTCAGCATGTATTCGGCATAGTCGGC 154341 28 100.0 32 ............................ ACTTGTTGATAACTTAATCTTGTCACTTCTTC 154281 28 100.0 32 ............................ ATTGCGTATTAAGTCTCTTAAGGCGGCTTTGG 154221 28 100.0 32 ............................ GGTAAAATTCTGTTAACTACCTCGTCAAGAAT 154161 28 100.0 32 ............................ AAACTCTAGATTGCAGCAAGCTGCGGCGCAGA 154101 28 100.0 32 ............................ CACTTTTAGGCCAACGGACAGTCACCCGCTGA 154041 28 100.0 32 ............................ TACTGTGGCTCACAGCTTCACACTGTAGCCAA 153981 28 100.0 32 ............................ ATTGCTGAGCGATAACGGGAATGTTACGTTGT 153921 28 100.0 32 ............................ TGTAAATGCGCCTGCTGACGAGCTAGCGGGAA 153861 28 100.0 32 ............................ AGACGTGATCCGCCATCTCAGTGAATTTCGCA 153801 28 100.0 32 ............................ ATTTATTTGACGGATATACAACATATAGTGGC 153741 28 100.0 32 ............................ ATGTCATCGGATATGATGAGATTAATCATTCT 153681 28 100.0 32 ............................ TTCCCAGCCGACACTGTCGCAGTGCAGTCGGA 153621 28 78.6 0 .............C......T...TCCC | ========== ====== ====== ====== ============================ ================================= ================== 52 28 99.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGTGACAGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGCTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATCATGTATTTTCTGCCGTAATCGATAATAGCTGTGACGCCAGCGGAATGAGTCGCAGGCTAACTATTTGATAAAGAAAAAATATAATTTTCAGAAAACTAACGAAAATCAGATTATCACAAATATTCAGAAAAAATGGTGGCTGCAAAAAATATGACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTACTAATAAAACAAACCGTTAGAGTGATCGGGCTACA # Right flank : CGGTTTTAAGTGCCATTATCTGGCTATTATCGAGGTAGCGCTATCGGCAGATTTTGATGCGTTATCGCCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACCTTTTTAAGTAACGGGTTTCTTTGTTGGGAATGAAAAATTGCGTATTGAACGTTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAACCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACACTTGTTGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTACAGACGTTATGCACCCCAAATCCCAATCAATCGTGGAAAACGGCCATATTTGGCTGTACTGATCCTGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 165257-166304 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACDSF010000031.1 Pectobacterium brasiliense strain CFBP8736 Pectobacterium_brasiliense_CFBP8736_contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 165257 28 100.0 32 ............................ GTATGCTGCATTTTTATACTGCGACAGTAATA 165317 28 100.0 32 ............................ AGGAAGCTCTGTGGGCAAGTCCATCAAAGGCT 165377 28 100.0 32 ............................ GTTGCAGGACGAGTTCATTGATACCGCAAAGA 165437 28 100.0 32 ............................ GATAATGTCACCCTCAAACATTTTAAACGTGC 165497 28 100.0 32 ............................ CACGTCGAAGCCATCACATATGTCGATTATTT 165557 28 100.0 32 ............................ ATGAGCAACCCATTCTTGCCTGATGATTACGT 165617 28 100.0 32 ............................ AGCGCCTACCCTCGAGTCGTCATAACCAAAAT 165677 28 96.4 32 ..............G............. TAAATAGGTCCCTGAGCAATATGTACGCTGAT 165737 28 100.0 32 ............................ CAAAGCCGCCAGCGACCTTAACGCCTACATGC 165797 28 100.0 32 ............................ GACGCGGAATTGATAGCCGTGCTCCCGTTCGC 165857 28 100.0 32 ............................ AGACAGGGCGGAAGCAAAACCAGGCGGCGCAA 165917 28 100.0 32 ............................ GATGGAGAAGAGAATATTTTCCATGTTGCAAT 165977 28 100.0 32 ............................ AGCTTGACGCGTAACGTAGCAACGTCGCCAGT 166037 28 100.0 32 ............................ CTGGCGCAATGCCGTTCGCCATTAACGCCGAT 166097 28 100.0 32 ............................ GCAACGGCGTGCATCGTGGAATTAGGCAGGAG 166157 28 100.0 32 ............................ GCAGCGAAGACGATCAGTGGAAGGATTACGAC 166217 28 100.0 32 ............................ GATCTCGAAACAGAGCTGGCGCAGTTCATGAT 166277 28 82.1 0 .............C........C..TGC | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACGCTGGATCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCACACTGCCGTTTGTGCAAATCAAGAGCCTGTCCAACGGGCAAATGTTCTTCGTATTTATAGAACATGGTCCGCTACAGGACGTTCCCGTCGCAGGACGCTTTTCCTCCTACGGCTTAAGCGCAGAAGCCACCGTTCCCTGGTTCTGACCCTTTTTTGGCGACCATCTGCAACCCATTGATTTTTAAATGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCGATAAAATGAATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACCTAATA # Right flank : CTTATCGAGATGCGTCGCTAGCGCGACGCATTCTTGAGGACTATTCCCCGTTGAGGGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGTATCGTTAGACTGTTGCCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCCGGCACCAAGCGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAACACCTGCATCAGCCCGACGTTTATCTGCCGCAGTGCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGAAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGTCGTATCCTGCTATCAGGCTTCGCGTGCCAGAATCGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //