Array 1 127158-126004 **** Predicted by CRISPRDetect 2.4 *** >NZ_FBIM01000039.1 Campylobacter coli isolate SWAN325, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 127157 36 100.0 30 .................................... AAATTTTGGATTAAACCAAGTAAGTATTTT 127091 36 100.0 29 .................................... CTAGCCCCTATCATATAGGGCTTAGAAAG 127026 36 100.0 30 .................................... AGTTTATTTCTTTTTCTTCTAACCATTTAT 126960 36 100.0 29 .................................... GCCGACAATTCTACATAACTATCACCAAG 126895 36 100.0 30 .................................... CCCAAGAGAACTTGGGAGACTTATTTTAGG 126829 36 100.0 29 .................................... TAAATTGACAAATACTTATGCCTAGCATA 126764 36 100.0 30 .................................... TAAAAGCTTAGTAGAAGTCGGTGCTGATAA 126698 36 100.0 30 .................................... CAACGCTAAATCTTTTGTAAATAGGAAAAT 126632 36 100.0 30 .................................... TTTTCGTATAAATAAGGTATTAAAAACTCT 126566 36 100.0 30 .................................... TGCTTCTTGAGGCGATAAACCTGGAGCAAT 126500 36 100.0 30 .................................... GCTTACAGCGAAATTGATTATTCTATAGAG 126434 36 100.0 30 .................................... ACTACTTAGATTATATGCACTCATTTTTAC 126368 36 100.0 30 .................................... AGATTGAGAAAGTGTTTTTAAATGGTAGTA 126302 36 100.0 30 .................................... AGAAGTAGCTAAAAAATATGGATTTAATCA 126236 36 100.0 30 .................................... AATTTACCTAGTATAATAATAAATAATCAA 126170 36 100.0 29 .................................... TGAAAATCAGCGAACTTATAAAAACTTTG 126105 36 100.0 30 .................................... AAAAAATCTTTTATTTAATGTGGATAAGAT 126039 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : TTATCAATCAAGTCCTAATATTTTTAAATAGAAATAAAATAATGTTAAAATATTTTGTTTCTATATTAAATCAAGGAGAAAAACAATGAAACATTTTATTTTTAGCGGATTAATTGGTTTAGGTGCTTTGGCTTTTTTAGCAGGTTGTGGCGATGAGGCAAAAACAAGCGATTATTATAAAGCGCACTTAGATGAGGCAAAAGCTAGAGTTGCAGAATGTAAAAAAATGGAGAAAATGAATGAAACTCAACAAAGGGATTGCTCTAATGCAAATGAAGCGGTATTATTTCAAAGAGACAAAAATAATAAATTTTATCAATCAAGTCCTGAAGCTTTTGAATGGAAGTAAATTAGCTTTAGTTTTATTTTTATGCTTTTTGATTCCAAATTTAGCTTTTGGGGCTGAAAGTCCCGAAGGGGCGTTAACACTAATCAAAAATGGACTCTTATCTTGGACGCCCCTTATTAAAACCGCTTGTTTGTAGATATTTTGAATTTTT # Right flank : AGACTTTGAACAAATAAAGAAAAATAGAGCTTTTTGTATACAAAAATGTATAAAAATATGCTATCATTTTAAAAGAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTCGGTTAGCCACGCAGGGTTACAATCCCTTTAAAACCGTTAAAATTCAAACAAACTAGCTTGTCTAATTTTATTAGACTTAGTTTTGTTTTCTTTGTATATCTTGTCATTGCTGTATTTAAAATCTTGTGTTTTTTCATCATACTCAAAAAGAACTAAATTTTTATCATCATTCATTTTTTCATTAAAAGTAACTCCGCCTAAAAGTATTTGCATATTGTCAAATTGTTTTTCAGTTATGGTTAATACTCTTATATTGCCACAAGGGGGTAAAATTCTTTCTACGGATTTGATTGCTGTTTTAGCCGAAGTCATTCCTTTGCAAATTTTAACATATACGCTAAATTGCATCATAAAAAAGCCAAGTTTTACAAGCGAAACTCTAAATTTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //