Array 1 74671-72125 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLXI01000001.1 Bisgaardia hudsonensis strain DSM 28231 Ga0310497_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 74670 36 91.7 30 TC..A............................... CAATATAAAATCTCTTATTCAACGTTTCTA T,C [74662,74665] 74602 36 100.0 30 .................................... TATCCAAGGTTGCATATTTTAAATGAGTAT 74536 36 100.0 30 .................................... TTATTTTATAAATTAATTTAATTGCTTCGT 74470 36 100.0 30 .................................... CATTCCTGTTTTTTTAGCGTAAGCGGGAAT 74404 36 100.0 30 .................................... CTCAAATTTAGTTACTTGATTAAAATGAGC 74338 36 100.0 30 .................................... CAGAGCTGCTGCAAACAAGTGGATGACAGG 74272 36 100.0 30 .................................... TTAAAAGAGCTACAAAAAACAGTTGGTGGT 74206 36 100.0 30 .................................... AGGACGTCTTGGTAATGATGATTTACAAGA 74140 36 100.0 30 .................................... CAATATTCATTTCAACAAGTGCTTGTTGCA 74074 36 100.0 30 .................................... AACACGAGAAACATCAAACCCAGATAATAC 74008 36 100.0 30 .................................... CTTAGAGGCAATCTACCCAATTACTCATCA 73942 36 100.0 30 .................................... AGTTATCTCAATCACCATTACAAGCCGAAA 73876 36 100.0 30 .................................... ATTTTTTCTCTGAAGAGCTTGACGAAACGC 73810 36 100.0 30 .................................... AACAGGCACAGGTATTGTCAATGGTGTATG 73744 36 100.0 30 .................................... CATATTGAACAAGGATTGGCTATATTAGAA 73678 36 100.0 30 .................................... TGTTTCAATATCTCTACGAAAATTAGTAAG 73612 36 100.0 30 .................................... CCCTGTAGTAAACCCAGTATCAGAGATTGA 73546 36 100.0 30 .................................... TATATCCTATCCATCTTGCTATATTTCTAT 73480 36 100.0 30 .................................... GCGCTTGTTCGCGCAGTGGCGGTAATGGTA 73414 36 100.0 30 .................................... TGATTATATTACCAAACCATTTAATCCTCG 73348 36 100.0 30 .................................... GTCTGATATTTCAAAGCGGTTAGCTAGTTT 73282 36 100.0 30 .................................... CAGAGATTATTGAAGATGACTCAATGATAG 73216 36 100.0 30 .................................... TATTGCAGGTCAAACTGTACCAGATGATTT 73150 36 100.0 30 .................................... ACAGAAACTAAAAAATAAGGGGCATAAAAT 73084 36 100.0 30 .................................... ATTATAATACTGTTATAACAAATGGTGCTT 73018 36 100.0 30 .................................... TTGCTTGCCATTTATATGCCAAGCCCTGCC 72952 36 100.0 30 .................................... ATTTAACCCATTTTTAACGCATATATAACC 72886 36 100.0 30 .................................... TAAGACGTTTAGTTGCAGGGCAATGTGATG 72820 36 100.0 30 .................................... AATGGTAGAGCACATAGCGATCGCTTGTGG 72754 36 100.0 30 .................................... TCAATTCAAATCTCATCGCTTCCAACTTCT 72688 36 100.0 30 .................................... TGGAGAAACATTACGCTTATATGTTTCAGA 72622 36 100.0 30 .................................... TAATTCAGAAATTTCACAATTCTTGATCGT 72556 36 100.0 30 .................................... CGTGGAAAAAAGTACAAGAAGAAACTGTTA 72490 36 100.0 30 .................................... ACTTAATTTTTATGCCAATAACCAAAGATA 72424 36 100.0 30 .................................... CCTAGATACCGTAAATATCTAGGCTTTATT 72358 36 100.0 30 .................................... TGTAATATTTGAGCGGTGTCATCAGGCTTT 72292 36 100.0 30 .................................... TTACTCATAATCTCTACACAAGCCTCTTGC 72226 36 100.0 30 .................................... AAAGTAGCAGTGGAGGCACTGATAACGATA 72160 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 39 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCTGTGCTACAAT # Left flank : ATAAAACAATAAAAGTGTTAGTAGATGTTTCAGGTAAAGAAAAATTAAAACCAAAAGAAAAGCTTGATGTTGTCATTAATGCTTATAAATTATTAAATTATAAAAGTGTTCTTGCTGAAATATCAGGTGAAAATTATAAAGTATTAGAGGGTGAGCCGTAAAACAAACGGGATAGATAAACTATCCCGCTGTTAAATTCGTGGTAGGGGTTGAACCTACAGTGACAATTTCTTGTTAGTTTACCATTAACTGACACGAATTTACTTCTTTCTAACAGTATAAAATCATCCAAAAGGAAAAGTCAAATGATTTTAGAATTCAAATTTGAAGATGAAGACGTTATCAGAAAAATCACGCACTTAAGAAAAGTGATGAGTGGTACAGATATTTCTCGAAAAATAGCTAATGTTTTACGAGAAGAGTCAGAAGAGGCTTTTGATAATGAACGCTCGCCAACGGGTGAAAAATGGAAGGATTTAGATGTAGAAGGTCAAACTCGA # Right flank : AGCCCTTGTGAAAGCCCTTATATCAAGGGCTTTCAACGATTTTAATTATAAAAAAATTTCTTTGCTTTCTATCATTTTTTTATATTTTTTTCTGATTTTTTGAAGGAAAAAAAGAACGATAATATAGATAAAATTATCTTATTTTTCTAAAAAGACTTGTTTTTTATTATTATCTCTGTATATAAAACAAGCAAACAGAAAAAATTTTTATGTATAGTAGATATAGATAAAAACATTAAAAAATTTAAAAAAGTAGCATTTGATTTGTGTTGACTTTCTTTTCTTGAATTTTTAATTTTCCAAGTAAAATATGCATACTTGCAAACTGTTTTTCTGTTACTTCTAAACAACGTATAGATCCTTCTTCGGGTAAATTCTCTTGTAAACGTTTATTATGTTTTTCTAAAGCATCTCTTCCTCTAACGATTCGGCAATAAACGGAAAGTTGTAACATTTGATAACCATCTTTAATTAAAAAATGACGAAAACGATTTGCAGCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCTGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 1 126821-125221 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLXI01000002.1 Bisgaardia hudsonensis strain DSM 28231 Ga0310497_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 126820 37 100.0 34 ..................................... TTATTGCAATAGTTGCAGCTGGTGCTGGGTTAAT 126749 37 100.0 34 ..................................... TGATTAGCTAAATTATAATCTCCCTTAGTTTCGT 126678 37 100.0 32 ..................................... CAGGTTAGTGCAATGGTATAAGCAAGCTTAAC 126609 37 100.0 35 ..................................... TGATGAAACGTCATAGTTTTTCTCCTATTTTTTAG 126537 37 100.0 34 ..................................... ACACTTCGGCACCGGAATCAATAGTAATTTTTCT 126466 37 100.0 37 ..................................... ATTGAATATACACCATACCCTACTTGTCGTTCACTTT 126392 37 100.0 33 ..................................... ATCGGTACAGAATTTAATACCGCATTTCGCCAT 126322 37 100.0 35 ..................................... TTGTTGGTAGTTTTTTACTTTGTGCCTGTTGTACT 126250 37 100.0 35 ..................................... GAAGTTGGGGTTTCAAATCCGGGGATTGTAGTTAA 126178 37 100.0 34 ..................................... ACAAACTCGTCCATTTGTTTTACAATACTGTCTT 126107 37 100.0 32 ..................................... TCTTCCGGCACAAAATCCTCAGGCTGAGCTTT 126038 37 100.0 33 ..................................... AAGTTTATTATGTAGCTTCTCAAAAGCTTCAAA 125968 37 100.0 34 ..................................... GGCTCTATTATTTCTGATACTGTTGCATTTTCGT 125897 37 100.0 36 ..................................... TCATGTAATTGGCGGTATTTTTCTTCACTAAACTTA 125824 37 100.0 31 ..................................... TTTTTACCTCAATTCTTGCTTAATTGTTTGC 125756 37 100.0 35 ..................................... CCGCCAGGCATATCGGAGTCATCGTAGCGATTAAT 125684 37 100.0 32 ..................................... GTGATTCCTCGTAAACACCGACTAGCAATAGT 125615 37 100.0 32 ..................................... TTTTTCACCGGTGGCTGCGCCTGAGGGTGTAC 125546 37 97.3 36 ..........G.......................... ATATTTTTCTACTATTTCCGCTTGCTTTCTAAAGAA 125473 37 100.0 36 ..................................... AATGCTCTAGACGAACTAGACCTAGTTCTAGGACGT 125400 37 91.9 33 ............A......CT................ TTCAGAGTGAGTTTAACCCCAAACGACTCTAAG 125330 37 91.9 36 ............A......CT................ GTTGGAACGAGTACTTCTCTAGAATATCTCTATTCA 125257 37 83.8 0 ............A......CT..........A..C.T | ========== ====== ====== ====== ===================================== ===================================== ================== 23 37 98.5 34 GTCGAAAGACACCGCCCTGTACGAAAGGGATTAAGAC # Left flank : ACCATGTTAAGTAATATTCAATTTAATTTTTAATTCATCAAGGAATAAAAATGCAATATTTAATTGGCTATGATATCTCAGATGAAAAACGCTTACAAAAAATACACCGACGCATGCAAAAATATGCGACTCCTATCCAATATAGTGTTTTTTTGTTTGAAGGCGATCAACATAAACTCCAAGAATGCTTAAAAACTATCTTAACTATTCTAAATAAAAAAGAAGATGATTTACGAATTTATCCGCTTTCTAAAAACTCAAATCAATGGAAAATAGGTAAACCAATTTTACCAGAAGGCATTATTTGGACAGCTTTAACATAACAAAATTATATCGTATCTTTATTTAAAATAAGGTAAAATATACTACATAAAACAAGCAGTAGATCATTAGATTGTTTATTTTTAAATCAATTCAATACCCAACGAATCATTGGTACAAAAATTTTGGGAAAGTCTTAGCTAACCCATTAAAAAACAAACAAAATATAACTATCTGCA # Right flank : TAGTGTTTACTTGTAGCTAAGTAAAATTACCAGTTTTCACATATCTAGCACATAAATATAGATAACATTTGATTTGATGAAGCAAGGAAGGCAAAACATTATTTTGAATATATTAGGAAACAAAAAAGCCTTTTATCACTAAAAGGCTTTATAAAAATAAGATCGAATTAATTATTGACGTTTTCCACCAAATCCTACATATACGGCACCGTCTTTAGTGACGTGTCCAATAACTTCTTCACCTTTTGGTCCAACAAAAGCACCGTCAAACTTACTTTTAACATCTAGATAAGAGGCATCACCATAAAATATAGGGTTTTTACTAGATATTCTTCCATTTGTTAAATTAATATCAGCTATTGGTTTTCCTGATTCTAAATGTCTATCGTAAATTTTACCAGTTAAGGTTTTATCAGAAAAATTAACATCTAATTGTAATTTACCTCTTGTTGCAACACCTAAAGACTCTCCTTTATAGGTAACAGTCCCTGATTTTGGTA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACACCGCCCTGTACGAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 251920-251701 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLXI01000002.1 Bisgaardia hudsonensis strain DSM 28231 Ga0310497_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================== ================== 251919 32 100.0 28 ................................ TCACGCAGTAAAAGAAATGAAAGCTGCT 251859 32 100.0 31 ................................ AGATATGAAAAAAGCACCTATGAAAGCAGCT 251796 32 96.9 31 ..........................C..... AGATGCAAAAAAAGCACCGGTGAAAGCTAAA 251733 32 96.9 0 .....C.......................... | A [251703] ========== ====== ====== ====== ================================ =============================== ================== 4 32 98.4 30 GAAGGTAAATGTGGCGAAGGTAAATGTGGTGC # Left flank : AAGATGCGTTTCCTTTTCCCTTCAACCTAATTCCAGCTGAATTAAATTGGAACTTAGCAATGGGAGCTGAATTATTACTCCCAGTATTGCTTGTGTTAGGTTTATTCACTCGATTTAGTGCTATTTCACTCGCTATCCTAACTGTAGTTGCTTGGGTCTCTGTACACCAAGGTAATGGCTATAATGTTTGTGATAACGGTTACAAAATGGCACTTATCTATCTAGTTATCTTGCTACCAATTATTGCGCAAGGTGCTGGTCGTTTATCTGTAGATTATTTTTTACAGAAAAACTTTTTAGCCAAAAGAACTTGGTTAAAATATCTTTAACTTTAACTTAAAAATTTAGGAGAAATCTCAATGAAAAAATCACTATTAGCGTTAGCAGGTGCATTAACTATGGCAACTTCAGTTCAAACAATGGCTGATGAACATAAACACGATAAAAACATGGATTGTAAAGACAAAAATGCTGAAAAATGCACGTCTCACAAAGGCATG # Right flank : CATTAATTAAAATAAAATGGTAGGAGGCGTAATTTATTTTACAAATCCTACCGACTATAATAACAATAAAAAGGAGTCGTTATGTTAATAGGTGCAGGTTTAGGTTATCGTAGAGATATTGCTGAAGGCTTTTTAGATTTACCAGAAAATAGTGCTATTCAATTTATTGAAGTGGCGCCAGAGAATTGGTTAAAGATGGGTGGATTAGCTCGTTACCAATTTGATAAAGCCGCAGAGCGTATTCCTCTTGCAGTACATGGCTTATCGCTTTCTTTAGGTGGACAAGCTCCTTTGGATAGAGAATTGTTATCTGGTATTAAACAAATGATGAAGCAATATGGATCAGATTTTTTCTCTGAACATTTGAGTTATTGTGAATGTGAAGGCCACTTATATGATTTATTACCAATGCCATTTACTGAAGAAGCAGTAAAACATACAGCAAACCGAATAAAAGAAGTACAAGATTTTCTTGGTGTGAGAATATCACTTGAAAATAC # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGGTAAATGTGGCGAAGGTAAATGTGGTGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 10928-14192 **** Predicted by CRISPRDetect 2.4 *** >NZ_SLXI01000007.1 Bisgaardia hudsonensis strain DSM 28231 Ga0310497_107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 10928 28 100.0 32 ............................ CATTGAAAACGCTTTGCGTTTCCAACAGGCTA 10988 28 100.0 32 ............................ TTTTGGATTATTATGTAAAGAGTTTAGACCTG 11048 28 100.0 32 ............................ AATAAATTTATTAACAGTTGAATCAAAAGCCT 11108 28 100.0 32 ............................ ATTGCATTTGTTTCCTCTTTAAAGATTTTTAA 11168 28 100.0 32 ............................ TGGTTCTCCATTTGGCAAGCGTCCTGCTAAAA 11228 28 100.0 32 ............................ TGTCTGATGATTAATACCTAGTCTTGGGAAAA 11288 28 100.0 32 ............................ ATTTCCAATCCCTCTTTTAAGTGTATTTTTAA 11348 28 100.0 32 ............................ TTTGTGGAGTATCTCAAGTTTCCGTTAGTTTT 11408 28 100.0 32 ............................ TTAAGTTCACTTAAGTAAGCTAACGATTTCTA 11468 28 100.0 32 ............................ AAGGGCTTCGGATAATTGAACTAAATTACGAG 11528 28 100.0 32 ............................ ACTAAGTTTGGACTTATCCGCTTTTTCTATTT 11588 28 100.0 32 ............................ ACAAAATCTGCTTATTTTATTATTTATATCTT 11648 28 100.0 32 ............................ AACCTCGCTCAATCATAATCTCAATCACTTCA 11708 28 100.0 32 ............................ TCTTTTTTTTGTCTCTTTTTCACTATATTGAA 11768 28 100.0 32 ............................ TTTGACACAGTACCTAGTGAGAAAAAATTTAA 11828 28 100.0 32 ............................ AAAGTCGCGCGTGTTCGTGAGCTTGGTTAATT 11888 28 100.0 32 ............................ TATAAAAAAACCAGTAATATTATAGCGAGAAA 11948 28 100.0 32 ............................ TATTAATGCAAACCCAACTTCCGCTTCTTCTT 12008 28 100.0 32 ............................ TATAAGTGTCCTAAGTGTGGAGCTGCTCTTTC 12068 28 100.0 33 ............................ CATTTTGAATTCGATGAAATCAATTTCGTCGAG 12129 28 100.0 32 ............................ CCAAGCCAGTGCGATTGCTTTAATATCGCCTT 12189 28 100.0 32 ............................ TCTTAATCTTTGAATTTCCCAGCTTTCAGCCC 12249 28 100.0 32 ............................ AAACCATGTCATCACTTCAGGCTCATATTGAT 12309 28 100.0 32 ............................ GTACTTCTGGAGTTTCTGTACGGGCTCTGATC 12369 28 100.0 32 ............................ CGTTAAACACAGCATAGCTAAAAAAATAATAT 12429 28 100.0 32 ............................ AATATAAAATCTTGTACTGTTTCAAAGTGGGA 12489 28 100.0 32 ............................ TTTATGGAATCCCTGCTCATCTTCATACCAAA 12549 28 100.0 32 ............................ ATTTTTCTGCCATAAATTGAACATATAGTGCC 12609 28 100.0 32 ............................ CACCAAGACCAAAATGGAATGATGAAGGATTT 12669 28 100.0 34 ............................ CGCATGAAGCAGCTAAAGCGTTAGAGCTCGCTCA 12731 28 100.0 32 ............................ TTGTTGATGAAGCATTTCAATAATTCTTGGTT 12791 28 96.4 32 .............T.............. GCCGAACATAAAAACCCAGCTTGCGATGATGT 12851 28 96.4 32 .............T.............. TGATGAAGTAATACCACATCTTGCGGAATCAT 12911 28 96.4 32 .............T.............. GCTAAAACTAGCTGTTCTAAAATGAATATTAA 12971 28 96.4 33 .............T.............. ATCTTCTAACTCAAAGAAACGTTTTAAATGCTT 13032 28 96.4 32 .............T.............. ACTCTTTCAAACATTCATCAATAAGAGATTTA 13092 28 92.9 32 ..........A..T.............. TTAATCCAGAGCGGAAATCCGCACCCGACAGC 13152 28 92.9 32 .............T...T.......... ATTTGCTTGAGCAAACTCCCCTGCTCTAATAT 13212 28 92.9 32 .............T...T.......... AGTCGGGATAATAGCATGGTGTGCTGAAATTT 13272 28 92.9 32 .............T...T.......... ATTATTTGTTGTTCAGTAGCTTTGTTATTTAC 13332 28 92.9 32 .............T...T.......... ACTCCCCTCTATATTAATATTTTTCACTTCAA 13392 28 92.9 32 .............T...T.......... ATCAGACAAAGAAGAAGAGGAATACTCATACT 13452 28 92.9 32 .............T...T.......... TAAAAGTTGTGTCGTGAAATGACCGCTCTTTT 13512 28 92.9 32 .............T...T.......... TTGTTTCTGTTGGTATCTCACCAGTTTCTAGC 13572 28 100.0 32 ............................ ATAATCAACCGTTGCACCTGGTGTCGTTCTAA 13632 28 96.4 32 .......A.................... ACAAGCTGGTTCACTTAATGTAATAAATCCTT 13692 28 100.0 32 ............................ AAACGTCTTGCTATTGCTTGATCTCTTTCCTG 13752 28 100.0 32 ............................ GATAAACCCAGTCATTCCGCCGATAAATGTCG 13812 28 96.4 31 .............T.............. GCCCAAAAAGTTTTACGACTTTTTTTAAAGC 13871 28 96.4 32 .............T.............. ACAGCTTCCGTCTCTGCTGGTGGAACAGAGGT 13931 28 96.4 32 .............T.............. ATTCCCGAGAAAAGTGCTTAATCTTCAACTTT 13991 28 92.9 32 .............T...T.......... AACTTGCTATGCAATTTACGTCTTTATAACCT 14051 28 89.3 32 .............T...T......A... TTACCATTTCTTGTGTTATATTATGGTTCATC 14111 28 85.7 26 A...........GT...T.......... GTATTATCTTTTATCATCCTCAAACT 14165 28 78.6 0 A..........T.T...T....C.A... | ========== ====== ====== ====== ============================ ================================== ================== 55 28 97.4 32 GCTAACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTATTACAAAATGCTTTAATGCAGAGTGATCTTGAGAATTATGTGCTTATTTCTGATGCAATAAAAACACCAGAGATTATCGAATATCGTTGTTATAGCCGTTTTCAAAGAAAAGGACAAAGTGCAATACGAAGAGCCAAAAAACGTTTAACTGAACAGCACAAATGGAGTGAACAAGTAGAACAAAATATGTTGAACAAACAGGAACAACAAGATTTTCTACCTCACATTCACTTAAAAAGTGCAACAACAAAACAAAATTTTATTTTGTCAGTTAAAGTAACAGTAAAACACAAAGCCTATATCGGTGAATTTAGTACTTATGGTTTAAGTAGCGAAGCAACGGTTCCACATTTCTAAAATAAAAAATAACCCTTTTTTTATCTAGAAAAATTTTCTCTGATAAATTAAAGGGTTATCTACATCATATAAAAAAAGGAATTTATAGAAAAAGTTCTTTAACAATTTGGAATATCAAATTTTTTTATTTATAATCCTTA # Right flank : ATAGAGAAAAATAAAAAACTCATCCGCTGCTCCAGATAAGCCTCGCCGAGAGTGGGATTTGATGTTCTAGCGGGACTGCCCTCTTGATACAAATTGGTTAGATAATAGGAGAAAATATAAACAACATCAATACCATAAGCACATACCGTAAAGTGATAATTATGATACCGATAATATATTAAGGGACTAAAGTAAATTAGCCCCAATATTTTAAGGTTATATAAAAAATTGGTTGCGCCTTAAAAATTATTTTAGTCCAATAAATAAGCCCCAAATAAAAGTCAAAGGGTATTTAAAGGCAAAGTATAAAAGTATAATGATGAAGTAAGACACACCAGCCCAAAACATAACTTGAAGAAGCGTAGCCTCACTGAAAATACAAAATAGCAACCCTATTTCATAAGGTAATAATGCAATAAACCAGACAAATAAGCTTGGATGCTTTTTACTCAAGTTTCCTTTATAAGTAGCCATTTAACTCTCCTATTAAAAATAGAAAA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //