Array 1 3865827-3860833 **** Predicted by CRISPRDetect 2.4 *** >NC_009665.1 Shewanella baltica OS185, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3865826 28 100.0 32 ............................ AATACGCTGAACTGAACACTGTGACCGCTCAA 3865766 28 100.0 32 ............................ GCCATCAATCGTTTGGCGGCTTCAATATCTTC 3865706 28 100.0 32 ............................ AAGTGGAAGCACATCGCAGTGATTGCGATTGA 3865646 28 100.0 32 ............................ TAAAATTACCACAACCACATAAACTGATAAAT 3865586 28 100.0 32 ............................ ACCTATCAAAGTGGTCTGCCGACCATGCGTGA 3865526 28 100.0 32 ............................ TTAAAGCATAGCCCTAGCTGGCGCGCGGATAT 3865466 28 100.0 32 ............................ TCCAGTGCTTGAGAGCGCTCTTCTGTCCTTGC 3865406 28 100.0 32 ............................ TACAGAGTCAAAACTCTGCGCCAATGGCATAA 3865346 28 100.0 32 ............................ AAACACGGATTTTTTAATGCAGCGCCAACAAA 3865286 28 100.0 32 ............................ CTTTTCTTTGCAATTATCGCATTGATTGGGGC 3865226 28 100.0 32 ............................ ATCAGTGCGAGGATAGGCTCTAACGCTGTTTG 3865166 28 100.0 32 ............................ ACTTGTTGATATTACTGTACCCGTAAATATTT 3865106 28 100.0 32 ............................ ACCCATCGATTGAGACATCCAAACTGGTGGGA 3865046 28 100.0 32 ............................ ATATAAAGTGACAGAGTTCAGAGGTGTAAGGT 3864986 28 100.0 32 ............................ CCAAGCGGTGGCCTTTTCAGTTCCGCTAATAA 3864926 28 100.0 32 ............................ TTTGTACGGTTGCGTCTTGAAATGCAGGAAGT 3864866 28 100.0 32 ............................ TATATCAAACACCCCGACAAACTCAGCTTTAT 3864806 28 100.0 32 ............................ GATGGAAGTCGCGCGCGATTCGAATGAGAAAT 3864746 28 100.0 32 ............................ CTCTGTAGGTTGCGATATGACGTTAATCTCAG 3864686 28 100.0 32 ............................ ACCTAAGGGCAAGCGCGGTACAAACTTCCAAG 3864626 28 100.0 33 ............................ AGCCCCTTACGTTGTCGATGTTGTTATATCCAC 3864565 28 100.0 32 ............................ AATATCGTCGAACAGTACCGATTGAAGGTAAG 3864505 28 100.0 32 ............................ AAGTGAGTTTTTGACCCGCCTGGTGCGATGTT 3864445 28 100.0 32 ............................ TCTCTAGGAACAAAATCATGCGTTTCGCGTGG 3864385 28 100.0 32 ............................ TTATGCGTTGTTCAGCAACCCGATAATTCTCT 3864325 28 100.0 32 ............................ TACGGTGAACACCAAATACATTGGTATTGCGG 3864265 28 100.0 32 ............................ AGGCGGGTCAAAAACTCACCTAGTATCGATGT 3864205 28 100.0 32 ............................ TCATAGCTCGGCATATAAATCACCTGTTAAAT 3864145 28 100.0 32 ............................ GATATTATGCTCCAAATTCGACCGGTTATGTA 3864085 28 100.0 32 ............................ CTTTTCTAGCGAGGCAGGTTAGAAGTTCGTCA 3864025 28 100.0 32 ............................ TAACTATGTCCTGCCACTTTGTTGGTTCTTTG 3863965 28 100.0 32 ............................ GTATAGAGATACCATTTCATGAGGACTTTGTC 3863905 28 100.0 32 ............................ TGTTAACCTGACTTTTTCGAGCTGCTTTTGGG 3863845 28 100.0 32 ............................ CATAAGAATGGAATAAAACGCATTGGCCGTAA 3863785 28 100.0 32 ............................ TATTTAGTGCAACCATGGCTTTGCTCTCTGTT 3863725 28 100.0 32 ............................ AGAATTACGACAATCATAAGATTTAAAACTGT 3863665 28 100.0 32 ............................ TACGGTTTACGATAAGGCCAATGAAATAGAAT 3863605 28 100.0 32 ............................ AATCGGTCGCCGCTATCACGAATTGCAATTAG 3863545 28 100.0 32 ............................ ACTATCTAAGCCAACGCGGGGCGCAAATCGCG 3863485 28 100.0 32 ............................ AGTTTGATAAAGTGATGCAACGCACCGCGACC 3863425 28 100.0 32 ............................ AAGTTTTCGGTCAGGAAACATTGCAGCATTAT 3863365 28 100.0 32 ............................ TTCAAGCACAAAATCCAGTGTTAAACGGCCAG 3863305 28 100.0 32 ............................ GTCCGTACAACAGCCCGAAAGAAATCACCGTC 3863245 28 100.0 32 ............................ GTGTCGAAGTCATGGAGTTATTAAGCTAATGC 3863185 28 100.0 32 ............................ TTCAGCTAGAGGGATTTGAACCTGTACTGGAT 3863125 28 100.0 32 ............................ CAGAAGTTAAGCAACAAAAAGACACATTAACA 3863065 28 100.0 32 ............................ TACTGAGCAAATCGGGCAAGCGTCACTAGCCA 3863005 28 100.0 32 ............................ ATGGCAAGATAGAAAAGTACACTGCGAATAAT 3862945 28 100.0 32 ............................ TTAGGCAAGAAAGAGTATCCGTTGTTCTACTA 3862885 28 100.0 32 ............................ TCAATGAAGAGCATGAGGAACTTATTAAAATA 3862825 28 96.4 32 .........T.................. TACGCAGCCTTGCTCGACGGCTAAATCTTCAA 3862765 28 100.0 32 ............................ TAAATGGCTGCCAATCGTCGAAGAGTATTTAA 3862705 28 100.0 32 ............................ ACCAACAAAAACCAATAGCAAGTCGCTGGTAC 3862645 28 100.0 32 ............................ TTACGTCAATTTCGATTTCGACCTCCGCAAAG 3862585 28 100.0 32 ............................ AGAACGCCGATACCGCGCGCGCGATATTTCTG 3862525 28 100.0 32 ............................ TCTGAAAATAGGCTAAATGTCGCGCCGTCATC 3862465 28 100.0 32 ............................ GTTGGCGGAGGTTTCGCCGCGCACCACGGTAA 3862405 28 100.0 32 ............................ TTAAGCCAAATTGCCGATGCGGTATGCAAACC 3862345 28 100.0 32 ............................ TGTTACCGAGACTTCTCTTGAGAACCGTTCCC 3862285 28 100.0 32 ............................ TGCCAACCAGCTACGCCAAAAACATCATCAAG 3862225 28 100.0 32 ............................ AATCAACGCAATCCGTTAACGACTGCACTGGC 3862165 28 100.0 32 ............................ TTTATCGTCATATATACGTGGGAATGCAACAG 3862105 28 100.0 32 ............................ CAATAAAGAATTCATTTGCTGCAAAAGAGAAT 3862045 28 100.0 32 ............................ AGAAGACCAGATGAAAGATTCTACGACTCCAT 3861985 28 100.0 32 ............................ CGCCGCAATACCCACAGAGGTATAACCCATCA 3861925 28 100.0 32 ............................ TGTATCTCAAACCAGTAAAACCGAACCAGGGC 3861865 28 100.0 32 ............................ CCACTTTAGAGCGTTGATATTTGGCACACCGT 3861805 28 100.0 32 ............................ TGCTGACGGCTAAGTTAACAAACCCTCGTCGT 3861745 28 100.0 32 ............................ TTCACCGACTACCGTAACAGACCCTTTGGTTA 3861685 28 100.0 32 ............................ TTGCCGAAGATGTTCATCATAGCCGTATTAGT 3861625 28 100.0 32 ............................ AATAAAACAAACCAGCAAACCCAATAATCAAA 3861565 28 100.0 32 ............................ CAGTCGCACCATACGCAGTTTTTTGTGTTTTC 3861505 28 100.0 32 ............................ AGCCCAAATTAGTACTGTGTTTGGTACTGTTT 3861445 28 100.0 32 ............................ ATCCTGACCATCTAGGCCAGCAAGACCTTGTA 3861385 28 100.0 32 ............................ TGTAAGGACTACAGCTTAAGGCGTTTGCAATG 3861325 28 100.0 32 ............................ ATCGATATCAATTGCGCTATCCGCTAATAGCT 3861265 28 100.0 32 ............................ ATAAAAAAAGCCCCAGCATAGCTAGGGCTTAC 3861205 28 100.0 32 ............................ TAACCAAGTACCGCTAAACGCAGAAGCAGCGT 3861145 28 100.0 32 ............................ ATGCTGCGCCGTGGAAAACCAATTATCCAAGA 3861085 28 100.0 32 ............................ AGTTAGCGGAGATGCTAAAAGGCATCAAAGCA 3861025 28 100.0 32 ............................ TGACAGGCTTTGTAACAAACAGCATTTCACAA 3860965 28 96.4 32 ............G............... CGGCTGGCGGTTAGAAACTCGTTTAAATGAGG 3860905 28 89.3 17 ..................A...C...G. TTCATCAGTATGCGATT Deletion [3860861] 3860860 28 71.4 0 .....AT...AT......T.T.C.T... | ========== ====== ====== ====== ============================ ================================= ================== 84 28 99.4 32 GTTCACCGCCGCACAGGCGGCTTAGAAA # Left flank : GGAAGATCTAAAGGTAAGCAATTGGCTGCGTCATTTTACCGACTACTTGCATATCAGTAGTATCCGTCCAGTGCCCGATAAAATAGAAGTTTATGTTGCTTATTCACGCCCAGCAATCCGTGCGAATAAAGCGCGGGAAATCGCTCGAAGAATGAAGCGTCATAATGAAACGTTAGTGCAAGCTACAGCGCATTTTGAAGGTTTTAAACCTAAAAAGACCAAAGCGCCCTTTGTTTATATGCAAAGTTACACTAAGGATTCGCGCTTTCCTTTATTTATTCAACAAACACATAGTGCTGTAGTAAAGGAGGGAAATGTTTCGTTTGACAGTTATGGATTATCAAGCAGAGGCTATTTACCCAAGTTTTAACCTTATAATTTATGCTCTTTAACAAATCAAATAGAAACAGTGAGTTACTGCAGTGTGTTTTTCGTAAGGTAAAATAATGTTTTTTATCCTAACGAATTGTAGTTACTCACTTTTAAACTAGTAATCTATT # Right flank : ATCTATGGCAAGTTGATTTTTGAGCGCGATTTTAATGGAGTGATTCTGCTATACTCCGCGCCAAGATATCAAATGACAAATCATTATTTTAGTTTTGTGTACAAGCGTGTGTACAAACTGATTGAACAACGAGTAAGACTTAATAAATATGTCTATAGAAATCAATAAGCGACGCACTTTTGCTATTATATCGCACCCCGACGCGGGTAAAACAACCATTACCGAAAAAGTGCTGTTATTCGGAAACGCTTTGCAAAAAGCGGGAACGGTTAAAGGCAAAAAATCGGGTCAGCATGCTAAGTCTGACTGGATGGAAATGGAGAAGGACCGTGGTATTTCTATTACTACGTCTGTGATGCAATTCCCCTATGGTGGCGCCCTCGTTAACCTACTCGACACGCCTGGTCACGAAGACTTCTCTGAAGATACCTATCGTACACTGACCGCTGTTGACTCTTGTCTGATGGTCATCGACTCTGCTAAAGGTGTTGAAGAGCGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //