Array 1 3330123-3325472 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKJH01000001.1 Acinetobacter sp. FDAARGOS_558 unitig_0_quiver_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3330122 29 89.7 31 ....G.......CC............... AACGAGCATGGTTTAGATTTAAGAGATGGTA 3330062 29 89.7 31 ....G.......CC............... TTTGAACTTGTGCATTCTCAATGATTGTTTT 3330002 29 89.7 31 ....G.......CC............... TATTGTGAGCACCTTGATTGCTGTGCGCTGC 3329942 29 89.7 31 ....G.......CC............... ACAGCGGGAAACTTGAAAGTCATTGCGAAAT 3329882 29 89.7 31 ....G.......CC............... GATTGCCCCCTGAGGAAACTGTATAAAGTCC 3329822 29 86.2 31 ....G.......CC..............A AACACCAACTAAGCCATTCCCTATTCAAAAA 3329762 29 86.2 31 ....G.......CC..............A TGAACTTTTAATGGATGCATGCGCCGCCCAC 3329702 29 86.2 31 ....G.......CC..............A CGAACAACGATAATTTGGAATACACGCTCAT 3329642 29 89.7 31 ....G.......CC............... CAGGAGAAAGATCGTTCAAAAGCTCAAAACC 3329582 29 89.7 31 ....G.......CC............... GAAAGTTTTGATATCCACTCTGCTGTTTCAA 3329522 29 86.2 31 ....G.......CC..............A GATGGTAAGAAAATTATTGAGTCTGGAGACA 3329462 29 86.2 31 ....G.......CC..............C GACAGTCCAGTTGATCAGATCTTGATTAGAC 3329402 29 86.2 31 ....G.......CC..............A ATGACATGGTTCAACAATTAAATTCATCTCA 3329342 29 86.2 31 ....G.......CC..............G TTCTTTTCTGCAATATGTGCCATTAGGTATT 3329282 29 86.2 31 ....G.......CC..............A TTTTAGATGAAACAAAAGATAGCAGGATTAT 3329222 29 86.2 31 ....G.......CC..............A GACCAAGCGGATTGACCGTATTGATAAATAA 3329162 29 89.7 31 ....G.......CC............... TCTGCAATACAAATCACTGGATCAGCCAGGT 3329102 29 89.7 31 ....G.......CC............... GAGTCTTTGATTTCCCAAATATTACTTGAAA 3329042 29 86.2 33 ....G.......CC..............C CTGAAAAATTTCACTGTGTCCATTTCGTTATTA 3328980 29 89.7 31 ....G.......CC............... ATGTCTTTAAATTCTGAAAAAACACTTGTTC 3328920 29 86.2 31 ....G.......CC..............G AAAAAATTGAAAACTTTTTAGAAGTAAATGA 3328860 29 86.2 31 ....G.......CC..............G CCACACATGCCTAAAAACGCAAGTGCGCTCG 3328800 29 86.2 31 ....G.......CC..............A TTATCAGATAAGCCTTTTATGAATGATCGTT 3328740 29 86.2 31 ....G.......CC..............A TTAGCTATTAGCTTTTTGGCAACAACAACAG 3328680 29 86.2 31 ....G.......CC..............A GTTCATGAAAACAGCTTTAAAAAGAAAGCAC 3328620 29 89.7 31 ....G.......CC............... CCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 3328560 29 89.7 31 ....G.......CC............... TGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 3328500 29 89.7 31 ....G.......CC............... GGTACGACAACTACGAAAAGCTGAGCAAAGT 3328440 29 89.7 31 ....G.......CC............... CAACTTAAATGGATGCTCCCCGCGGTGAATT 3328380 29 89.7 31 ....G.......CC............... TGATTGCTAGACGGATTTTTAGGCAGATCAT 3328320 29 86.2 31 ....G.......CC..............G AGTTTAATGCGCTATATGGCGACGAGGATTT 3328260 29 86.2 31 ....G.......CC..............C ATGCAATCGCGTTGATTACCGCAGCTTCGAA 3328200 29 86.2 31 ....G.......CC..............A TGAGCCGCAACCATACGGTCTATGACTTCCA 3328140 29 86.2 31 ....G.......CC..............A TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 3328080 29 89.7 31 ....G.......CC............... CCAAGTGAATCGGCTCCTAATGCAAATGACC 3328020 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 3327960 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 3327900 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 3327840 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 3327780 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 3327720 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 3327660 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 3327600 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 3327540 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 3327480 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 3327420 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 3327360 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 3327300 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 3327240 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 3327180 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 3327120 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 3327060 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 3327000 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 3326940 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 3326880 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 3326820 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 3326760 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 3326700 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 3326640 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 3326580 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 3326520 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 3326460 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 3326400 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 3326340 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 3326280 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 3326220 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 3326160 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 3326100 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 3326040 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 3325980 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 3325920 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 3325860 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 3325800 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 3325740 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 3325680 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 3325620 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 3325560 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 3325500 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= ================================= ================== 78 29 93.1 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3335213-3337395 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKJH01000001.1 Acinetobacter sp. FDAARGOS_558 unitig_0_quiver_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3335213 28 100.0 32 ............................ AATCCTATAAAATTTAAAAGTGTTGATTTTAT 3335273 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 3335333 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 3335393 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 3335453 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 3335513 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 3335573 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 3335633 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 3335693 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 3335753 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 3335813 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 3335873 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 3335933 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 3335993 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 3336053 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 3336113 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 3336173 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 3336233 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 3336293 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 3336353 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 3336413 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 3336473 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 3336533 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 3336593 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 3336653 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 3336713 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 3336773 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 3336833 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 3336893 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 3336953 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 3337013 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 3337073 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 3337133 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 3337193 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 3337248 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 3337308 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 3337369 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 37 28 98.5 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //