Array 1 242645-241291 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYUX01000019.1 Salmonella enterica subsp. enterica serovar Copenhagen strain OLF-FSR1-STCopenhagen-51 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 242644 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 242583 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 242521 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 242460 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 242399 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 242338 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 242277 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 242216 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 242155 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 242094 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 242033 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 241972 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 241911 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 241808 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 241747 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 241686 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 241625 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 241564 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 241503 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 241442 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 241381 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 241320 29 96.6 0 A............................ | A [241293] ========== ====== ====== ====== ============================= ========================================================================== ================== 22 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAGGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 260331-258777 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYUX01000019.1 Salmonella enterica subsp. enterica serovar Copenhagen strain OLF-FSR1-STCopenhagen-51 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 260330 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 260269 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 260208 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 260147 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 260086 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 260025 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 259964 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 259903 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 259842 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 259781 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 259720 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 259659 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 259598 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 259537 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 259476 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 259415 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 259354 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 259292 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 259231 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 259170 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 259109 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 259048 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 258987 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 258926 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 258865 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 258804 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //