Array 1 261653-262962 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQZP01000004.1 Pseudomonas aeruginosa strain S1h NODE_4_length_406853_cov_23.0956, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 261653 29 100.0 32 ............................. CAGCCGTGCATATCGCGCTGGATGTGCAGGGC 261714 29 100.0 32 ............................. CAACGCTTGGCGCGCTGCGAGGCGCTGGCGAA 261775 29 100.0 32 ............................. ACGATCCCGACCGCCAAGATTGGCCGTCGCCG 261836 29 100.0 32 ............................. GCTTGGATTCTTCTGCGTATGCGAAGCCGCAC 261897 29 100.0 32 ............................. ACGATGGCGTCCAGCAGGGTCGGCTCGATGTT 261958 29 100.0 32 ............................. AACGCGATATCGGACAGCGAACCGCCAGCGTG 262019 29 100.0 32 ............................. GCTGGAGCCGCCGGCAAGACGTTCGGCGAGGC 262080 29 100.0 32 ............................. GACGGCGACCTGAAGCGCGCGGATGCGATGAA 262141 29 100.0 32 ............................. ACGTTCTTGTGCTTCTTGCCGGTCAAATCCGC 262202 29 100.0 32 ............................. GCCGGCCAGGTGCTCGGCCAACAGCTCGCGAA 262263 29 100.0 33 ............................. ACTGGTACCGCGCGGGCAATCAGCGAACCCGCG 262325 29 100.0 32 ............................. GCTGCTCAGGCTAGCGCCGCCTCTACTCTCAT 262386 29 100.0 32 ............................. TGTTTACGAGCTTCAGCGGCCCTCCATGTAGA 262447 29 100.0 32 ............................. GAGGAGTTGGAGGCCATGATCGGCGCCAAGTC 262508 29 100.0 32 ............................. GCGATCATCGAATGGCCGCACCGCATGGACCT 262569 29 100.0 32 ............................. CTCAACGAGAAGAACATCCCGCGCAACATGAT 262630 29 100.0 32 ............................. GCCATCAAGGAAGAGCCCCAGCTGCGCGTCGA 262691 29 100.0 32 ............................. CTGCGTGTTCACGCCGAAACCCTTGGCTGGGT 262752 29 100.0 32 ............................. TAGTCCTGGCGGATATCGCTGCACCAGTGCAT 262813 29 100.0 32 ............................. ATGGAAGACCCAACCCGCGGCCAGGGGTGGGG 262874 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 262935 28 79.3 0 A..........A..C..-.....A....T | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGTCGGTGGATGGTCGAGGGGGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTAGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGAAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGTGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 272134-273687 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQZP01000004.1 Pseudomonas aeruginosa strain S1h NODE_4_length_406853_cov_23.0956, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 272134 29 100.0 32 ............................. CAGCTCATCGAGTACAGCAACGTGCTCAACAA 272195 29 100.0 32 ............................. TAGTCATAACGGTCATAGTGCTTAGACGACAC 272256 29 96.6 32 ............................A CCGACACCTACACCTCGACCAAGACCGGGGAA 272317 29 100.0 32 ............................. CGCTGCTCCTGCTCTGCCTGATCCAGGCCGCC 272378 29 96.6 32 ............................C GCAACGCCTCGTCGAGCGACGGCAGCGCGCTG 272439 29 100.0 32 ............................. ACCCGGCGAAACCCTGCATATCGGCGACAACA 272500 29 100.0 32 ............................. CCACTGGGTTACCCCGTATTGGTAGAGGGTTC 272561 29 100.0 32 ............................. GATCGCCTCGTTCTCCGACCCGACGCCTTCCA 272622 29 100.0 32 ............................. TCGACCTTGTCGACCCAGGCGACCGCCTTGAG 272683 29 100.0 32 ............................. CCCATATGTCGCAATGTTCTATACCAACAGAA 272744 29 100.0 32 ............................. TGCCGGTGGCGGTGCCATGCCGGGTGCCGACG 272805 29 100.0 32 ............................. TCCTCCACCCGCTGGGTGATTTCCTCGGTACG 272866 29 100.0 32 ............................. CGGGATAACAGTGGGAATCAGTCTGTAGGCTT 272927 29 100.0 32 ............................. TCGTAGCGCGGACTGATGTCGTTGCAGTACTT 272988 29 100.0 32 ............................. CCATGAAGGGTTCCTTCCGCGCCGTAGAGCAG 273049 29 100.0 32 ............................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 273110 29 100.0 32 ............................. CCCGCGCGGCAATAAGGTGAAACTGGGAGACG 273171 29 100.0 32 ............................. GTCTCCCACGGCGATCCGCGGTAGATCATGTT 273232 29 100.0 32 ............................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 273293 29 100.0 32 ............................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 273354 29 100.0 32 ............................. ATGTGCTTCCAGCTTTCGTCGTCCAGCTTCCG 273415 29 100.0 32 ............................. ATAAAAGAGGCCGTCAAATACCGATGCGTCCT 273476 29 100.0 32 ............................. CAGCGGGCCACCTGGCTGCAGTTGCTGACCAG 273537 29 100.0 32 ............................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 273598 29 96.6 32 ........T.................... AAGGACCGCGTCCGCGTGCTGCTGGAGACGAT 273659 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGTCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGTCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //