Array 1 62505-60646 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNYM01000016.1 Escherichia coli strain MOD1-EC6174 MOD1-EC6174_16_length_132041_cov_25.2945, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62504 29 96.6 32 ............C................ CGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 62443 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 62382 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 62321 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 62260 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 62199 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 62138 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 62077 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 62016 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 61955 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 61894 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 61833 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 61772 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 61711 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 61650 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 61589 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 61528 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 61467 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 61406 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 61345 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 61284 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 61223 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 61162 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 61101 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 61040 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 60979 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 60918 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 60857 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 60796 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 60735 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 60674 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 89148-88204 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNYM01000016.1 Escherichia coli strain MOD1-EC6174 MOD1-EC6174_16_length_132041_cov_25.2945, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 89147 29 100.0 32 ............................. AGATTTGCCAAATTACGGACCTGATGCTGGGT 89086 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 89025 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 88964 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 88903 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 88842 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 88781 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 88720 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 88659 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 88598 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 88537 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 88476 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 88415 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 88354 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 88293 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 88232 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTTTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //