Array 1 41515-43822 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXON010000023.1 Pseudomonas aeruginosa strain MB635 NODE_23_length_106648_cov_10.237362, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 41515 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 41575 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 41635 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 41695 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 41755 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 41815 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 41875 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 41935 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 41995 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 42055 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 42115 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 42175 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 42235 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 42295 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 42355 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 42415 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 42475 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 42535 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 42595 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 42655 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 42715 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 42775 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 42835 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 42895 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 42955 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 43015 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 43075 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 43135 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 43195 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 43255 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 43315 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 43375 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 43435 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 43495 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 43555 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 43615 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 43675 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 43735 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 43795 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 52915-52347 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXON010000023.1 Pseudomonas aeruginosa strain MB635 NODE_23_length_106648_cov_10.237362, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52914 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 52854 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 52794 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 52734 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 52674 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 52614 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 52554 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 52494 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 52434 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 52374 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 69651-70351 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXON010000004.1 Pseudomonas aeruginosa strain MB635 NODE_4_length_376010_cov_16.870372, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 69651 29 100.0 33 ............................. TGACGCGGTTTGTTCGTAAGATCCGGACCATGC 69713 29 100.0 32 ............................. CCCGCGAGCTGATGGCGGTCAACCATGGCTTC 69774 29 100.0 32 ............................. GAAGCAAACCACGGGCCATTTTGGAGCGGTAA 69835 29 100.0 32 ............................. ATACGAGGCGGACACGTCCAGGAGCTGGAGAT 69896 29 100.0 32 ............................. CGCAGCGTGCGCAGGAAGATGCGAGCTTTCAT 69957 29 100.0 32 ............................. CCCTGTCCGACGCAGAGCGGGCGCGGCGCTAC 70018 29 100.0 32 ............................. ACCCTGCAGCGATCGATCAAGCTGCAGATCGC 70079 29 100.0 32 ............................. CCGCGCAGCAGCTTCCAACCCAGCGGGATCAG 70140 29 100.0 32 ............................. GGGTTCAACGACTGCGGAAACCGTCCGGCACC 70201 29 96.6 32 ..............T.............. CAGCCAGCTTCGGCTCTCTGCATTGTTGAGCT 70262 29 100.0 32 ............................. AAGGCTTCGGCAGCCTCCTTTGATATCCGCGG 70323 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.4 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : CCAGCTCGACAGCGCGCGGAACTTCATCGCCGCCTATGCCTTGGAAGGCGAGTGGCTGCCGAGAGAGCGGGTCCATGGCTTCGGGGCGCTGATTGGCCGACCCTTGGGGCGTCTCGAGCGGTGGATGGTCTCCATCAACTACAAGGGGGAGGAGCAGTACAGCCCGATCCCCAACGATGCCTGTGTCCTCAGCCATCGCGACCTGATCAAGGCGATGGTCGCGACTCCCGGCGACCTTCCTGTCTCCACCGACGAGATGTTCGAGCTCGCCCAGGCGGCGCTGATGAACCTCAAGAGCCGCGCCACAGTGCAACAGCACCAGTTGCGGCAACTGCGCCAAAGGGTCAGGCAGTGAATGCCCCATCGGCATCCTCTGAGCACCTCAAGATGGAGCACGCTGGTATAAATGGGGGCCTTCCGGGGTAGCGCGAACGCCCGTTTTTATCGGTGGAGTTTTTCCTGCTATTTTTCTTATTTCAAAACAATGATATACGGAAAGT # Right flank : TGCGCTGCAGGTGATCCGCCTGACGCTGCGCAAGTGCCCCTACTGATGCGGGGGTTACCTCATGAGCGCAACCCTGGCTGGCTTGGGGCAGTAGGGGATGGCCGTAAACGGCATGGAGAGGGCGCCTTCTGGCGCCCTTTCTGTTTCTGCCAGATGAGCCCTGGGTTTTGATGTTGGCCAGGTGATGGTAGATTGCGGGCTTTTAGGAGGCTGGATATGGAAAGCGGCTCTTCTTTATTGCTTGGTTTTGTCCTTCTGATTGGAGGTGTTGTCCTCTACTTTTTACCTGCAATAATCGCTGAAAATAGAAAGCATCATAATAAAGGTGCGATAACTGTATTAAATGTGCTTCTCGGATGGACCTTAGTGGGATGGGTTGCCGCTTTGGTTTGGGCTGCGTCTGCCACAAGAGTGAGTGAGAGAAACAATTCTGTGGGTCGAAATAATCTAAATCTGCAAGCTCAAGCAAGTGATGTTCGACCATGTCCGTATTGCGCCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124057-124757 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXON010000004.1 Pseudomonas aeruginosa strain MB635 NODE_4_length_376010_cov_16.870372, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 124057 29 100.0 33 ............................. TGACGCGGTTTGTTCGTAAGATCCGGACCATGC 124119 29 100.0 32 ............................. CCCGCGAGCTGATGGCGGTCAACCATGGCTTC 124180 29 100.0 32 ............................. GAAGCAAACCACGGGCCATTTTGGAGCGGTAA 124241 29 100.0 32 ............................. ATACGAGGCGGACACGTCCAGGAGCTGGAGAT 124302 29 100.0 32 ............................. CGCAGCGTGCGCAGGAAGATGCGAGCTTTCAT 124363 29 100.0 32 ............................. CCCTGTCCGACGCAGAGCGGGCGCGGCGCTAC 124424 29 100.0 32 ............................. ACCCTGCAGCGATCGATCAAGCTGCAGATCGC 124485 29 100.0 32 ............................. CCGCGCAGCAGCTTCCAACCCAGCGGGATCAG 124546 29 100.0 32 ............................. GGGTTCAACGACTGCGGAAACCGTCCGGCACC 124607 29 96.6 32 ..............T.............. CAGCCAGCTTCGGCTCTCTGCATTGTTGAGCT 124668 29 100.0 32 ............................. AAGGCTTCGGCAGCCTCCTTTGATATCCGCGG 124729 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.4 32 GTGTTCCCCACGGGCGTGGGGATGAACCG # Left flank : CCAGCTCGACAGCGCGCGGAACTTCATCGCCGCCTATGCCTTGGAAGGCGAGTGGCTGCCGAGAGAGCGGGTCCATGGCTTCGGGGCGCTGATTGGCCGACCCTTGGGGCGTCTCGAGCGGTGGATGGTCTCCATCAACTACAAGGGGGAGGAGCAGTACAGCCCGATCCCCAACGATGCCTGTGTCCTCAGCCATCGCGACCTGATCAAGGCGATGGTCGCGACTCCCGGCGACCTTCCTGTCTCCACCGACGAGATGTTCGAGCTCGCCCAGGCGGCGCTGATGAACCTCAAGAGCCGCGCCACAGTGCAACAGCACCAGTTGCGGCAACTGCGCCAAAGGGTCAGGCAGTGAATGCCCCATCGGCATCCTCTGAGCACCTCAAGATGGAGCACGCTGGTATAAATGGGGGCCTTCCGGGGTAGCGCGAACGCCCGTTTTTATCGGTGGAGTTTTTCCTGCTATTTTTCTTATTTCAAAACAATGATATACGGAAAGT # Right flank : TGCGCTGCAGGTGATCCGCCTGACGCTGCGCAAGTGCCCCTACTGATGCGGGGGTTACCTCATGAGCGCAACCCTGGCTGGCTTGGGGCAGTAGGGGATGGCCGTAAACGGCATGGAGAGGGCGCCTTCTGGCGCCCTTTCTGTTTCTGCCAGATGAGCCCTGGGTTTTGATGTTGGCCAGGTGATGGTAGATTGCGGGCTTTTAGGAGGCTGGATATGGAAAGCGGCTCTTCTTTATTGCTTGGTTTTGTCCTTCTGATTGGAGGTGTTGTCCTCTACTTTTTACCTGCAATAATCGCTGAAAATAGAAAGCATCATAATAAAGGTGCGATAACTGTATTAAATGTGCTTCTCGGATGGACCTTAGTGGGATGGGTTGCCGCTTTGGTTTGGGCTGCGTCTGCCACAAGAGTGAGTGAGAGAAACAATTCTGTGGGTCGAAATAATCTAAATCTGCAAGCTCAAGCAAGTGATGTTCGACCATGTCCGTATTGCGCCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //