Array 1 146941-147946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQUW010000003.1 Corynebacterium diphtheriae bv. gravis strain 09-15 NODE_3_length_249147_cov_56.850602, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 146941 29 100.0 32 ............................. GCCGCTTCACGAATGATTGAGCTTGTCACATT 147002 29 100.0 32 ............................. CGTCTCTACAAACAATGCGCAAACCATAGCCG 147063 29 100.0 32 ............................. AAGGTATTGGTGCTATGCGCTCGATCGGCGCC 147124 29 100.0 32 ............................. GCTCAAAAGTCGGGGCTTGTCCTGTCGCTGGA 147185 29 100.0 32 ............................. GGGTCTGAAGCCATGAAATTTGAGGCCTTGAA 147246 29 100.0 33 ............................. TCCGGCGTCGGCTTTTCCAGCTCTGGCCTCGAA 147308 29 96.6 32 ............................G AAGGGGCAAGCAGGTGCGGTTACAGTAGCTGA 147369 29 96.6 32 ............................G CCGTCATTGCCGACCACAACGAATCTTCGGAA 147430 29 100.0 32 ............................. GTTGATAATCGTTGGTGCTGGTCGAGAGTCCG 147491 29 96.6 32 ............................G AAGGGGCAAGCAGGTGCGGTTACAGTAGCTGA 147552 29 96.6 32 ............................G CGCGCTGCGGTGCACCAAGAGCAGACGACCTG 147613 29 96.6 32 ............................G CTTCTGATCTTGCGGCGCTACGCCTACGGGTG 147674 29 100.0 32 ............................. CCGCGAGTCTATGTCAAAAGCAAAATTGATGC 147735 29 100.0 32 ............................. GGTTTTGATCGCCATTTCGCCAGCGCCCAACC 147796 29 96.6 32 ............................G AAAACCAATACTCCTACAGCTGGAACGACCAA 147857 29 93.1 32 .............T..............G TCATAATCAGCACTGTCAATCCTCATGTATTG 147918 29 93.1 0 ...........GT................ | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.0 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAAAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAAGACTAAGCAAATTTGGGTGAATAGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGTCTCTAAACATGCAGCTTGATAAGA # Right flank : CAGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTTTATTCTGTGGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 41383-42328 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADQUW010000013.1 Corynebacterium diphtheriae bv. gravis strain 09-15 NODE_13_length_45224_cov_54.324345, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 41383 29 100.0 32 ............................. GTCTCCAGTGTTTTCCCGATCTTGTATTCGGG 41444 29 100.0 32 ............................. GAAGGGGGCCACCTGGGCCGCCAACTCGGATT 41505 29 100.0 32 ............................. AGGTTTGCTCCGAGCGTTCCCGGCAGTTTCGC 41566 29 100.0 33 ............................. TGCACCAGGCTCTCATATCGGAGGCAGAAGCAA 41628 29 100.0 32 ............................. ACCCGTAGGGGGTTTCGGGGGATTTTTTTTAG 41689 29 100.0 32 ............................. TCATCGACGAATCGCTGCGAGCGAACCGAGAA 41750 29 100.0 33 ............................. TAAGTTGTCGGTGTCGCGGCGTCGGTTATCGCG 41812 29 100.0 32 ............................. TTCCAGTTGGCGTTCCGTAGGGTTGGCGCATG 41873 29 100.0 32 ............................. ATGTCTTCACACGCTATTCGCAGTGGGTGGGG 41934 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 41995 29 100.0 32 ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 42056 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 42117 29 100.0 32 ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 42178 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 42239 29 100.0 32 ............................. GCGAGCGACCGGCATGCCATCAGACCCGACCC 42300 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : CGGCAGGCAATCCAAATATTCGTGTGATGCGTGTGTCTGATGGCTCGCTCATGGACTCCGAGTCTCAGAAGATTCTCTCCGATATTGCGACAGAAACAGGATTCCAGGTGTGGGTTGAGCTGGTTGATGAAACCGGTGAACATGGCATTGTGATTGAAGATGGGCAAGTGCGGGAACTTATAGAAGAAGCAGTGTAAGTGCTGCGTGGTGGGGCGCGCATACCTTCAACGCGCACTAGATCAAAGGACAAAGAAAATGGCACAAGGCGAAGTCAACGTCACCATTGTTGGTAATCTCGTTGCAGACCCAGAACTTCGCTTCACCCCTAATGGTGTAGCAGTAACCAGCTTCCGTGTTGCTTCTACCTCCAAGAAGTACGACTCCCGGTCGAACCAGTGGGTAGATGGTGACGCGGTTTTCTTGCAGTGCAACATTTGGCACCAAGCTGCCGAAAACGTTGCAGAATCCCTCACCAAGGGCATGCGCGTGATCGTCACCGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //