Array 1 106722-106082 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSA01000030.1 Salmonella enterica strain CVM 43809 43809_contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106721 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106660 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106599 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106538 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106477 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106416 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106355 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106294 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106233 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106172 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106111 29 96.6 0 A............................ | A [106084] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 317309-318740 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYSA01000014.1 Salmonella enterica strain CVM 43809 43809_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 317309 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 317370 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 317431 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 317492 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 317553 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 317614 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 317675 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 317736 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 317797 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 317858 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 317919 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 317980 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 318041 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 318102 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 318163 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 318224 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 318285 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 318346 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 318407 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 318468 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 318529 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 318590 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 318651 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 318712 29 96.6 0 ........A.................... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : CAGGTTATGCGCAAAAATTAATTCATATTATAGTGTTCCCCGCGCCAGCAGGGATAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //