Array 1 208812-207884 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVX01000003.1 Pasteurella multocida strain HNA18 Contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 208811 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 208751 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 208691 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 208631 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 208571 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 208511 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 208451 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 208391 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 208331 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 208271 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208211 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208151 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208091 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208031 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 207971 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 207911 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATACTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 105747-106913 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVX01000005.1 Pasteurella multocida strain HNA18 Contig005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 105747 28 100.0 32 ............................ TTATCGCGGAAGTCAGTCGCCATAATGGCGTA 105807 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 105867 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 105927 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 105987 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 106047 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 106107 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 106167 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 106227 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 106287 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 106347 28 100.0 32 ............................ AAGCACTATGCCGATAGCTCCCCAAAAGTCAT 106407 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 106467 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 106527 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 106587 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 106647 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 106707 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 106767 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 106827 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 106887 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //