Array 1 29183-30693 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUG010000001.1 Riemerella anatipestifer strain 20190514E3-1 NODE_1_length_673790_cov_219.087545, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 29183 47 100.0 30 ............................................... CCCCTCCCCCAGCTTCTCCCGGAAGCGCAG 29260 47 100.0 31 ............................................... CTGCCGTAATGCCTAAGCCTTTATGATTGAT 29338 47 100.0 30 ............................................... CAAAATGAAACTCTTTTAGAAGTATCTTGG 29415 47 100.0 30 ............................................... CAGACTGTCACTGCCCTGTGGTGAGAGATT 29492 47 100.0 30 ............................................... TAATATTATGAACATTTGTAAAATCCTTAA 29569 47 100.0 30 ............................................... TCAACTATTCAGCAAATGTAGACGATACAG 29646 47 100.0 30 ............................................... AGCACGATAGAATTATGCTCATTGAGTTAA 29723 47 100.0 30 ............................................... GTATAAAAGACCAAGTGGAGATTACCCATA 29800 47 100.0 30 ............................................... AATTAGTTAATTCTCTGGGCGAGGTAGTTT 29877 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 29954 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 30031 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 30108 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 30185 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 30262 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 30339 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 30416 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 30493 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 30570 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 30647 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== =============================== ================== 20 47 98.4 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : TATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,4.87 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 54952-54008 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFUG010000009.1 Riemerella anatipestifer strain 20190514E3-1 NODE_9_length_55972_cov_221.706324, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================= ================== 54951 36 72.2 81 ...................TGCTAT...T..A.G.A CTCCGCTGAAACTACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGGAAGGTAGAATTGAATGTTTTCATGATCT 54834 36 100.0 30 .................................... ATAGCAGTAGAACCATCAAACGCTGTGGCT 54768 36 100.0 30 .................................... CGGCAACAAAAGAAGGAGAAGAACAAAGCA 54702 36 100.0 30 .................................... AGCAACATATACGAAAATCCAGAAATCTTA 54636 36 100.0 30 .................................... TGTGCTTCCTACAACGAGTAGCGTTCCTTT 54570 36 100.0 30 .................................... TTAACTAAGTTACCTAGAAGTATAAATGAA 54504 36 97.2 30 ...................A................ CAATAGGACCTATTATATTTACAACAACAG 54438 36 97.2 30 ...................A................ ATTTTGAAAATATAGAGGCGATAAGCCTTT 54372 36 97.2 30 ...................A................ ATTCTAAAAGGTACAGAGAATGAAGCTAAA 54306 36 94.4 30 ...................C........A....... TCAACCAATTTAATCTGCAACTCTGAAATG 54240 36 97.2 30 ...................C................ TAATTTTAAGACATTCTACCTTACCAAATT 54174 36 97.2 30 ...................C................ TGATAGGAATATTTCTTATTCTATTTTTTA 54108 36 97.2 29 ...................A................ TTAGGAGCAAATAAGCTGTATTTATTGGT 54043 36 66.7 0 ...................TGCT.T...T.ATTGTT | ========== ====== ====== ====== ==================================== ================================================================================= ================== 14 36 94.0 34 GTTGTGAATACCCTTCAAAGTGAGAGCAGTCCCAAC # Left flank : ACCTAGCAGATGACGGTAAACTAAACGGGTTGTGAGTACCCTTCAAATGTTACGCATTCACGAACTCCGCTGAAAACTTACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTTCTGTGTTTTGTGCTGTAGCCTTAATATGTTGTTAATACCCTTCAAATGCTACGCATTCACGAACTCCGCTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACACTCACAACAACTTAAAATACCAAAATAAAGTTGTGAATACCCTTCAAATGTTATGCATTCACGAACTCTGCTGAAAACGACAACAAAGTTGTGAGCTAAACTGAGAGCAGTCCCAACAATCAGACTTAGCAGATACTCGTGAAAAAAGTTGTGAGTACCCTTCAAATGTTACGCATTCACGAACTCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACTTGGACGAATAATACGCCATTGTTTAACTC # Right flank : ATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGATGTTTCAAAGAACGCTTTTCTTTACAACGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACTTATGATGCAGCACCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGCTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGCTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGTACATCTGCTTATGGGCATGGAGTATATCCTCGTACTTTTGGCGTTCAATGTTGCCCTTAAGCTCTT # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.27, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAGTGAGAGCAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: R [matched GTTGTGAGTACCCTTCAAAATGTGATACTTCCCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //