Array 1 112865-114174 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUX01000012.1 Salmonella enterica strain BCW_3055 NODE_12_length_138161_cov_1.82315, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112865 29 100.0 32 ............................. CCTCCGCCCCCACCTCAACGACAACAAAAGAA 112926 29 96.6 32 ............................A AATAGCCGCTCCCTTTAAATTCCCGGTGCTCC 112987 29 100.0 32 ............................. CGCTCAATGCTGGCGCGTATTCCATACTTCCA 113048 29 100.0 32 ............................. CCCGTAATCCATTGGATATCTGGGCTACTCAT 113109 29 100.0 32 ............................. GCAACATGCGCACCGCCCGTGAAATGCTGGGT 113170 29 100.0 32 ............................. TTGTTCCATCGTTCCCGGTTGTCTGCTCGCCC 113231 29 100.0 32 ............................. GATTTACCCATATCCAGACGACACGCTGTTTT 113292 29 100.0 32 ............................. GGTGCGGGAGCCAATCCCCGCTACGTGGCAGT 113353 29 100.0 32 ............................. ACTGCCACAACAGGGAAAATCAGTGTTACGGC 113414 29 100.0 32 ............................. CAACGGATTCCGACCAACGCAGCGCCAGCGCC 113475 29 100.0 32 ............................. ATTGCCGAATTTATAGCTACCACCCCGTACCA 113536 29 100.0 32 ............................. GTTAATGCCTTTAAAACAAAGCGCCTCAATAT 113597 29 100.0 32 ............................. CTCGACGGCGACCCAACACAACTACCGGACCA 113658 29 100.0 32 ............................. CCGGATGAATCGTGGATGAGCGCACAACAGGA 113719 29 100.0 32 ............................. GCGACTATCGATTTAACAGGTAGATCGTCAAG 113780 29 100.0 32 ............................. TCGCCGCGGGTAGAAATTTACAGCATTGATGA 113841 29 100.0 32 ............................. GAAAGATGCCGGCTGCCTGCGGCCAGTACATC 113902 29 96.6 32 ...........A................. TTACCGATAGACAGGCTCGCACTCGTGCAGTT 113963 29 100.0 32 ............................. GCCAACAACATTGAGCCAGCTATCTCGGCGCA 114024 29 100.0 32 ............................. ATGATTTTCTCCTCAATTACCCGCTATAATAC 114085 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 114146 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCTGAGCCGGAATCTCTGGGTGACAGCGGACATCGGGGGCATGGTTAATGAGCATGGTGGTGGTGGTGACTGAAAACGTACCGCCGCGCCTGCGAGGGCGGCTTGCCATATGGTTACTGGAGATTCGTGCGGGGGTTTATGTTGGCGATACATCAAAACGCATTCGGGAGATGATCTGGCAACAGATTACACAACTGGGTGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAGT # Right flank : ATTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //