Array 1 113-854 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNNM01000023.1 Nitrosomonas eutropha strain Nm38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 113 37 97.3 34 ....................................T AGGTATGTCTTGACAACTAATAAGTTTCTTAAGC 184 37 100.0 33 ..................................... CGCTATCGCTGGAGGTATTGCTCCTGTACCTAC 254 37 100.0 33 ..................................... GTATTAAATTCCAGTTTCTTATCCATAATTACT 324 37 100.0 34 ..................................... GATGTTGTTGTTTGGCTTGATAGTGACATGAAAA 395 37 100.0 33 ..................................... TGATCCAGATGTGGCATTAAACAGCCTCAATAG 465 37 100.0 34 ..................................... TATCGCACGACCATGCATCGTGCCCTGCGGCTGA 536 37 100.0 33 ..................................... TGATCCAGATGTGGCATTAAACAGCCTCAATAG 606 37 100.0 34 ..................................... TATCGCACGACCATGCATCGTGCCCTGCGGCTGA 677 37 100.0 33 ..................................... TGATCCAGATGTGGCATTAAACAGCCTCAATAG 747 37 100.0 34 ..................................... TATCGCACGACCATGCATCGTGCCCTGCGGCTGA 818 37 94.6 0 ...................................TT | ========== ====== ====== ====== ===================================== ================================== ================== 11 37 99.3 34 GAAACACCCATGCCCTGATTTCAAAGGGATTGAGACA # Left flank : CGCTGTCGTGCGGGCGCTTCCGTGTAATATCTGTCCCATAAATCATCCCTCCGTAGCTGGTTATATGTTACACCAGCACACCGTGGGACTAAACACTTAGGCTGTGCTTCTTG # Right flank : TGGCATACAAGCCGGTATTTGTTTTCCTCGTCATCACGAAGCCGTCAGGCTATGGTGATCCACTACCACCGCTACCACTTCACTGGATTGCTTCACTCCTTGGGTGTGTGCAAAAGCAAGGGCAGTGAACTGGGTTGCTACGTCAGCCTGGCCACTACCTGCTTTCCGCTGCATTATGCTTGTGGGCGCAGTCGCAGTTAAAGGCTGGTTTGCTCACAATGGCACGTCAGCTCACCAAGACAAGACGCTGTATGCTTGGCTTCGCACGGTTCATTCCCCATACCCCCCCTGCACAACTGTAAAATTACAGAATTACGCAGAAGTCTTTTTGTAAAAAAGACTGTTATCTTGGACAAGGAGTTTTCGTAATGGATAAAGCAATATATAAAGAAAGGTTTCCGGATTTCTTTGCTGATGCGCCGGCTGTAACCCTACGCGATCCGCTGGCACAGTTTCTCGGCACAGCACGTGACGGGATTATGGAATACCGGTATGCCGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCCATGCCCTGATTTCAAAGGGATTGAGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 3591-831 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNNM01000015.1 Nitrosomonas eutropha strain Nm38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 3590 37 100.0 35 ..................................... TGGACAAATACCCGGAGATAAAATAATGGCTGATA 3518 37 100.0 35 ..................................... ATAACACAACCATGGCTGATATTGCCAGCGAGATC 3446 37 100.0 34 ..................................... CCCTATATCCTCTATCACTTATCTGCCTTATGAT 3375 37 100.0 35 ..................................... TTTACCAAGCTGTGGATTGTTTCGCTCTATCCCAG 3303 37 100.0 34 ..................................... CGCGATTGGGGTCCCATTGGCCAAGTGTTCTGAG 3232 37 100.0 34 ..................................... ATACTTACCCGTATCTTCGCCGCCGAACTTAGCA 3161 37 100.0 34 ..................................... CTTGAAGCGCTTTCTGGTATACAGCGCGGTTGAG 3090 37 100.0 34 ..................................... CTTCCAGCGGCTGCTCCATGGATTGGTTTGTTGA 3019 37 100.0 34 ..................................... GAGAACACGCAAGGCATTCTGTACGCACTTGGTG 2948 37 100.0 34 ..................................... ATGTCAGCCATTGCGCTTTATCTGTATTTTTCAA 2877 37 100.0 34 ..................................... AGAATGCGGTTGAATTAATAACAGCTTTTATATT 2806 37 100.0 35 ..................................... TGGTATGCGCCCAACCAATCCGGTTTTGTCAGCAA 2734 37 100.0 35 ..................................... TGCCCAGCGGTTGCCAGAGAATTTGAAGGAAGTCA 2662 37 100.0 35 ..................................... TAATGCTGCCTGAAACGCTTCGCCAAAATTCATTG 2590 37 100.0 34 ..................................... GGATTGCTTAATTTTGATGATGCGCGCGCAGCTT 2519 37 100.0 34 ..................................... AGCAATAATACCAGATAATCGCTTAACACCAAGC 2448 37 100.0 34 ..................................... TACAAAATCCTGCTCGCCATATTCCGACAGGTAC 2377 37 100.0 34 ..................................... AATCCGGGACATTGCCAGCCGGGCTGTCTCTAAC 2306 37 100.0 34 ..................................... ATTTTTCATCTGGATTAAAGATAATTATTACGAA 2235 37 100.0 36 ..................................... ACGCAGGGAAGATTAAGCGGGTTTGGGATAAAGGCC 2162 37 100.0 35 ..................................... AAACCGTTGAGCGAGCAGCCGCACTACGCAGCCCA 2090 37 100.0 34 ..................................... CTGACGCCGCTGCGCGCCGGCACCATCAATGCAT 2019 37 100.0 36 ..................................... TTGGGAATCCATGTGCGCAAGGACACTTGTGCAGAA 1946 37 100.0 35 ..................................... AAGCTGCTCGCGACGATAGGCTGTCTGCCAGAGAG 1874 37 100.0 35 ..................................... GCCGATTTCCGCAAAATACTGAGTTGTACTGCCGT 1802 37 100.0 34 ..................................... TCAAGCTGCTGGGTGCGTATGTACTCTTCCAGCT 1731 37 100.0 34 ..................................... AAAAATGCTCCTGTTTTTTGCTCAGGAGACCCAT 1660 37 100.0 34 ..................................... ATACGATTTGGGAATTATGCATCCGGAGTGCACG 1589 37 100.0 35 ..................................... TGTCCGTGTGATAATCTCACCTTGCACGGTCTCAC 1517 37 100.0 36 ..................................... TGCACCATCACCCACAGTATCTACCGCTTGATGATG 1444 37 100.0 34 ..................................... ACGCAGCTGGTGAAGGCCAGGCGTGGTGGTCTTT 1373 37 100.0 36 ..................................... AAAATGTTTGGTGACAGCAATCTCTCTTGGGATCAG 1300 37 100.0 34 ..................................... TTTCTGCGTGCGGGCGCCAAAAAATGTAATCGGT 1229 37 100.0 34 ..................................... ACTTATCTGGGAGGCGGTGTTGATGTTAGTCCAC 1158 37 100.0 36 ..................................... TATATGGGGGAACGCCCCCAGATTATCAACATCCGG 1085 37 100.0 35 ..................................... TTCTACAGAACCAGCTGACAATGCGGCGGCTATAT 1013 37 100.0 35 ..................................... AGGATTGATCCATCAATCCCAGTTGTGACCAAGCT 941 37 100.0 36 ..................................... GAAAGACCGGCATCAGGGTACATAAGAGATGTAGTG 868 36 75.7 0 ..................T.AC...A.T.-.AA...T | C,T [845,851] ========== ====== ====== ====== ===================================== ==================================== ================== 39 37 99.4 35 GTAGCGCCCGGTCACCCGACTGGGCGAGGATTGAAAC # Left flank : GGTTATCTCCCTTTCCTGACCAGATAGTGATGCTGATTATTGTTACCTACGACGTTTCAACAGAAACCAAAGCTGGCCGCAAACGATTGCGACGAATCGCAAAAGTTTGCGAAAGCATCGGGCAGCGTGTGCAAAAATCCGTATTTGAATGCCGTATTGATTTGATGCAATATGAAGAACTGGAACGCCGCCTGCTGGCAGAAATAGACGAGCAGGAAGATAATCTGCGACTGTATCGGTTAACCGAACCAATTAAACTCCACGTAAAAGAATATGGAAATTTCAAGGCAGTTGATTTTGAAGGGCCACTCACCATCTGATACGCGCGAACCTGTAGCATCGGCCAAATACCGATCGGTTCGCGCCACATCTAACTACATGATACAGAATAGAAAAATAATTTACCCCTCCTTTTATCTGTTACATGCAGTCAAGGAAAATCTCATGTTCGCGCAAACTGCTCGAATTTTGATGATGTATCAAGAAGTTGTAACTGTACT # Right flank : GCCCCTTAACGGCAATTAAAAATTGCCCCCCCTGAATTAAGCTGGTCATTTTTTCTATGAGGTGGCTGCTATTATTGTTAATACAGGAGATGGCAATGACCATTAGGGTATTAAAGAAGCAGGGAAAGAGGATTAAAGAAAACTGTATATCATGCGGGCACCTCGAATAACCCGAGGGTTTCAGTCAATCCTGCCGCGAAATGATGAGCGCGACCGAATTCGGTTTGATTTCCATGACAAATCGCCGCTTTCCTGGCGATGTCGCGCCGCTTTTACCCCGAATCTCCCTGGGCATTAGCGATTCGGTCCATTTTGAGTGTCAAGAGGCCTTGATCCCTGTCTCTCCAAAGTAGACCAGTCGCCTCAGGTTGTAGCAGGCCGCCATCACCGAGCTAAGAGTCTGTTCAAAGTCTTTTGAGTAGAACGGCCAGGAAGGCCAGGTGAATAAACTGCAAGCTGGTGTTGAGTAAGCGCTCACAGTTCTTCCACAGCCGTCGATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGGTCACCCGACTGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.10,-15.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : NA // Array 1 3747-3499 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNNM01000027.1 Nitrosomonas eutropha strain Nm38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 3746 37 100.0 34 ..................................... CCGTACTCTCTCTCTACTGACACCATATATAGTT 3675 37 100.0 33 ..................................... CCATCTCCCTTGTCTATTAATGAGGATAGTATA 3605 37 100.0 33 ..................................... TATATCTATGGTGATTTCCTCACCTATATCATC 3535 37 94.6 0 ..................................T.G | ========== ====== ====== ====== ===================================== ================================== ================== 4 37 98.7 34 GAAACACCCATGCCCTGATTTCAAAGGGATTGAGACT # Left flank : ACCCGCGACGGCTGGCGCGCTTGCATCGCTATCTGGTAAAACGTGCCGTACCGTTGCAATATTCTGTATTTTTGTTTAGCGGAGATGATCGCCAGCTTGAACACTGCATGCAGGGGGCGATCGAACTGATTGATGAAAAAGTGGATGATTTGCGTGTTTATCCGTTGCCGAGTCGTGGGCTGAAGGCTCGCATCGGTCAACCCGCCTTGCCAGAAGGCATCCAATGGAGTGGATTGCCCACTGCGTGGTAGCGTACAGCTTTTCTGAAACGATCAATCGTCTGAAAAGAAAGCCAGATCAGTTACAGTTCGCTCTTGTAAACATGGCGGGATCGTTCAAAATATCAGAAAATAAACCAACCTCAGATATTTAAACTTTACCGATTATTGTATTAATGGAACAAATAACCAACTGACAGGAGACATCTTGCAGCTTCTTACCATTTTTCCTCTACACCCTTTTCAATATATTGATTGTAAAGAGAAAAATGACAGCAATCA # Right flank : AGTTGGTATGTAATTTCCCTGCCATCACGAGGGACGCAGTGATGTGGTAATCCAGTGTTGTCGTTACCACTTCGCTGGATTGCTTCACCCCTTGGATGTTCGCAAAGACGGCAAAGTCAGCTCACAAGCAGCGGCTCCTTAATGGCGCACCTTGCTTGTATAGCATGCCTGCACCAGCCTTGTGCGTCCGGCACCCCAGCCACTGATGGCTGCTCCCAGACACAGAGCGGTAAATAACCAGCCGCTGGCGGCATACCCGCCAGTGAGACTGTGCAGCATGCCAATCAGCAAGGGGCCCAGTGCCGCCAGCGTATAACCAACACTCTGCGCCATACTGGATAAGTGTGTTGCGATGTGAGCGTCGGGAGAACGCAGGACGATTATGGTCAGTGCGAGTGCAAACAAGCCACCCTGCCCGATTCCTTGCAAAATGCTGAATTCCCAGACTAATTCAATTGGGCCGAACAACATTCCCAGAAAGCCGATTGCAGCAGTGAGCG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCCATGCCCTGATTTCAAAGGGATTGAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 18626-19361 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNNM01000027.1 Nitrosomonas eutropha strain Nm38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 18626 36 100.0 35 .................................... CATTTTTTGATCTCCTTATTTAATTGATGGAATCA 18697 36 100.0 34 .................................... AGTAATAAATGTTTCATTTTGCTACCCCACAATT 18767 36 100.0 32 .................................... GATAATCTTTTCACACCAATCTGCACAAACGG 18835 36 100.0 34 .................................... TGCCGCATGCTTCCGCAGCAAGCTCTAGTAACTC 18905 36 100.0 33 .................................... TTTTTCTCTCTGTTATTGAAAAGTTAATTGGGT 18974 36 100.0 35 .................................... TTTACTGTTGCATTTTATCTTCTACCCATCATTGA 19045 36 100.0 34 .................................... ATCTCATCGATGCTTTTGTGTGCTGCTATGTCGT 19115 36 100.0 34 .................................... TCTATTTCTACATATTTACTACCGTTCTTATGGT 19185 36 100.0 35 .................................... CTCTCTTTCGCTTTATTAATTGCGAATATTTCTTC 19256 36 100.0 34 .................................... GTTGTATTTCATCACAACAAAACGGCTTGCATTT 19326 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =================================== ================== 11 36 100.0 34 GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Left flank : TTGGTTACATACGCCATATCCTTCGCTGCTTTTTCAGTAATCTGATTAACGCGACAAGTTGGTGCCAGCTCGAACATATAAAAATTACTCCGGTAAGCAGAACGGAGTGCATTGTGTATTAGCTGCTGGCCGACAAGCTGACGGCAAGCTTGCCGGTCAGAGTACGTGTTGCCTTGATCAGAATGGAGATATACGATTTCATTTCGGTCGAAGACCGGTCACGCGAATATGGATGAAAAATGGCAATACTTTTACAAACTGAAAGGACAGAAAAAGCAGTAATATCTGCCTGTTCCCTTGGAAATTGCTGGTTGTTGGTGGCTGAAAACACTGCAGATGACAGATTGTGGCCCAGGGAAAAATAGCCACCAGCTGCCTGGTAAAATGAAGCGTTTTTGAAAGAAATTATTGTTTGGAGGAGACATCTTGCTGCATCCCGCTATTTTTCCTCTTTGCCCCGTGCAGTGGATTGATTATAAAGAGAAAAATGACAGCAATCA # Right flank : CTAATCCAATGTGATAGGCTTAGGTGTTTAGTCCCACGGTGTGCTGGAATGGGTCAAAGATAAAACGATCTGGCTCATTTTTCCAGATTTTGCAGATGTATTCATAGGGTGTTAGGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACACCCATGCCCTGATTTCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //