Array 1 255675-254454 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068549.1 Cutibacterium avidum strain KGMB02810 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 255674 36 100.0 38 .................................... TGATGGAACCCTTCTCGTCGTCCTCGAGGCTGAGGATG 255600 36 100.0 40 .................................... CGCAAAAAATACTCGCCCACCGTCGCCAACGCTGCCCCGC 255524 36 100.0 38 .................................... TCATGATCGTGCCCCCGGTTCGATGCCGGTGCCGTGGC 255450 36 100.0 38 .................................... CTAAGGCAACGATGGAAAACGTGACACCCATCCCCGAC 255376 36 100.0 37 .................................... GGCGACGCCAACTCCGCCATCCAGCTTATGGTCGCCG 255303 36 100.0 37 .................................... ACTTGCCGCCCTTGCCGCCTGCACATGCCTCGCCCTC 255230 36 100.0 39 .................................... GGCTACCCGACGTTCCGCACTCGCGCCGAGGCGGTCACG 255155 36 100.0 38 .................................... TTGCCGCCATGACGCCACTCGGCCCAGTGATTCCTCGA 255081 36 100.0 37 .................................... CGGAAAGAAGTGGCGCACCAAGGACGCACTGTGGTCT 255008 36 100.0 35 .................................... GTCCCGACGGGATGCCACGCACCGGCATCGTGTCA 254937 36 100.0 39 .................................... CGGTGCACTCAGGTCCGCTCCACCGGCACCGGCGGGTCG 254862 36 100.0 38 .................................... CCAGCGCCACGCCCATCCAGATGTTCAGGAACGGCATG 254788 36 100.0 39 .................................... TGTTCGTGGGCGGGCTCCTCGGCGACGCGCTTGACTCCC 254713 36 100.0 38 .................................... CTGACACCTGAGGCCACAGAGAAGGCCTTAACCGACCC 254639 36 100.0 38 .................................... TCTCTCGTCCCTCCCCCCGGTGTGCGCAGCCACAGGGG 254565 36 100.0 40 .................................... CTACGCCACACTCGCACGGTGTCGGCGCCGACAAACGGTG 254489 36 94.4 0 .................................TC. | ========== ====== ====== ====== ==================================== ======================================== ================== 17 36 99.7 38 GCCTCGGCTTAACTGCCGAGGCAACTTCGTTGAGGC # Left flank : ATCGCGGGGTGACGGTGAGATGAGTCGCCAACCTGACGAGATGGCATATCTCATTGCTTACGACATAGTGGATGATCGCCGTCGCGACATGGTTGCGAAGGTGCTTGGAGGTTATGGCAACCGTGTTCAGTACAGCGTTTTCATTGTGGTGTGTACCAAGGCTGCGCTTCTTCGGCTCCGCCGGAAGCTGACGGGGGTCATTGATTGTGAGGAGGACTCGATACTTGTAGCGCTGTTGGGGCCTGATGGAGGGGCGGACCTCTCAGTGGATTGGATAGGTCGGAGCCGAAGAGTGTTTGACGATGCTCCGGTCATCGTCTGATGCGAGAGGGTCTTGAAACACGGAATCATGTTGACCGCTCGCAGCTGCGAAGCTGGTTCTCAGAGACGGTTTGACCGAGATTTCTCGGTCTGGATCTTGATAACTACGTGTTCCTGGCGCGGGCCCCTCGCGAAGGGTTGATATTCTTCCTAATGAGAGGCGCTTGGATCGCCACGCT # Right flank : TGGTCCGAGGTCGTTGAACCTTCCCGGTCGCCTCGATAACCCCCACCCGATCGACCCACCCAACCCCTTACACTTTCAGCGTGATATTTGTGGACCCCGCGAACACCAATCCGCATCCTGCCCGCACCCTCGTCATGGGTGTCGTCAACGTCACCCCCAACTCCTTCTCCGACGGAGGCATGTGGGCAGACCCCGAGGTGGCCATCCGCCACGCGCGTGACCTCGTCGCCCAAGGAGCCAACATCATCGACGTCGGCGGCGAGTCGACCCGACCGGGCACCGAACGCACCCCCGAGGACGAGGAACTGCGTCGCGTCATGCCCGTCGTCAAGGCCCTCGTGTCTGACGGGGTCACCGTATCCGTCGACACCATGCGTGCCTCCGTCGCCAAGGCGGTCGTCGAGGCCGGAGCGACGATCGTCAACGATGTTTCCGGGGGCAAGGCCGAACCGCAAGTCCTCAACGTTGTCGCCGATTCTGGCGTCGACTACGTCCTCATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCGGCTTAACTGCCGAGGCAACTTCGTTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 835791-835578 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068549.1 Cutibacterium avidum strain KGMB02810 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 835790 29 100.0 32 ............................. GACAGGTCTACGGCATCGGGGGTGGCGTTGGC 835729 29 100.0 33 ............................. ATTCGCATCCACGGTGTCCCCGTGAAGAGTCTG 835667 29 93.1 32 .......T....................T TCGTTTCCGGCGTCGGTAGAGAATGACCAGGC 835606 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 4 29 98.3 33 GTCTTCCCCGCCTACGCGGGGGTGAGCCG # Left flank : TCCCCGCCTACGCGGGGGTGAGCCTCAAACCCTTGTTGATCGGGATGTCGATAACCCGTCTTCCCCGCCTACGCGGGGGTGAGCCTTGCCCATCGTGAGCCACTGCTTTGTCCCCAATGTCTTCCCCGCCTACGCGGGGGTGAGCCTAGTACTCTCAGCACCCGACCTCGTGAGCCTCAGTCTTCCCCGCCTACGCGGGGGTGAGCCGGAGGTCAGCATGGCTGACCTTGTTATCCAGGCGTTGCAGTTGGCGACAGCGGTCGTCAACCTCGCAGCCGCCGTGATTGCGGTGCGCAAGCTCCGCAAAGAAAGCCGCCCCCGAGCAGCAACTCGGAGGCGGCGAGGTGGCAAACGCCGGTAAACAACGGGGACCCGGTTCCACAGAGGGGCCGGGTCCCCTCCTTCCACGAAGTATACCTGTCTGCGCGGGCCAGGAGAAGGGGTCGCCGGTACGCCGATGAAGCGCTTAGGTCTCACCACAAGGGCCGTTGATTGAGGTC # Right flank : GCATCACCGCCTCACAGACCCCCAGCGCGGCCGATGGACCGCAGCCGGAAGCGTCATCATCGACTGGCAAAACCGATCACTGGTCCCCATCGACGGAAACCTTGATGCCGTCATCGACCACTGGGCATGGACTCACGACCCCCAAGCCCACACATCCACCATGATCGACCTTGGCACCGGAACCACCACCACCAGCCCCGTCACCGCAACCCCGGCACGCCCCCTCGGCCTCGCCCAAAACCACCTGATCGTCATCAGCGACGACGACCAAGGGCACCTGAACCTCTACGGGCTCAAATCTGCATAAGCACTGCGGCGGCGCGCTAACAAAGCCCGCCGCCACAGCACTTCACAGATCATCTCTGAGCATGACTTCTTTCAGCTTGCGCGCTTGCCTCTCCAAAGCCTCTTCTTCGGCCCGGTTCTCCAGCTCACCGTCAATACCAGCTGCAATGAACCACAGCAGCAAGCCACCGCCGACCAGCACACCGGCCAAGACC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCTACGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 837392-836083 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP068549.1 Cutibacterium avidum strain KGMB02810 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 837391 29 100.0 32 ............................. GTTTAGGTCGGGCCTCCAAATCCGGTCAGGAT 837330 29 100.0 32 ............................. GTGGCGACGAGGTGTCCGTCGTCGCAGGCGAG 837269 29 100.0 32 ............................. TCTGGAGCAACCCTGACGTGCAAGACAGCCAA 837208 29 96.6 32 ............................T ATCTAGGGCAGGCTCGGCGGGAGGCTCAATGA 837147 29 100.0 32 ............................. GCCCGCCGTCGCGTCTAACATAAGATCCTCCG 837086 29 96.6 32 ............................T ACTGCCACCCTCTGTAACTATGTGTCAACAGA 837025 29 100.0 32 ............................. TGGGCTGATTTCGCCGTCCTCTCCACGTGGGG 836964 29 100.0 32 ............................. GCGGACAACGGCGGGCGACGCTCGGCTATCTG 836903 29 100.0 32 ............................. TGCCGTTCTGATGCCGTGGATGAAAATAGACG 836842 29 100.0 32 ............................. GACTGATGACATGGCTCGGACGACCATTCACG 836781 29 100.0 32 ............................. TTCACGCCCAACAAGCCGGGCCAGTGGGGGCG 836720 29 96.6 32 ............................T AGCCCCAGTTCCATGGAACGCTGGGTGGGCAT 836659 29 96.6 32 ............................T GCCGCCCATATGCCTGTCCATGCAGATCCGAG 836598 29 96.6 32 ............................T TCATCAGCCGCCGTTGTAGTTCTTTCACCGCC 836537 29 100.0 32 ............................. CGTCCACCGGGGCGGCGCAGCGGATCCTGGGG 836476 29 96.6 32 ............................T CCCTCACGGAAATTAGCACCATAGGGCACTTT 836415 29 96.6 32 ............................T TCACGCCGCGATCCCCGAGGCCCTGGTCGAGT 836354 29 96.6 31 ............................A ATTCGAACGCCCCGACGGCTTCTCCTCTTCA 836294 29 96.6 32 ............................T CAAACCCTTGTTGATCGGGATGTCGATAACCC 836233 29 96.6 32 ............................T TGCCCATCGTGAGCCACTGCTTTGTCCCCAAT 836172 29 96.6 32 ............................T AGTACTCTCAGCACCCGACCTCGTGAGCCTCA 836111 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 22 29 98.3 32 GTCTTCCCCGCCTACGCGGGGGTGAGCCG # Left flank : GACGCCCCCGGAGATCCCGATGACGGATACGGGTGGGATGTTGTCGACCTGTGGGACGACCGCACTGGCACGGTCGCCGGCGGAAGATCGTGGGCATAGCCATGGTCGTGCTCGTCCTCACCGCCTGTCCCGCGGGACTGCGTGGCCACCTCACGAGGTGGTTGCTCGAGATCAGCCCTGGGGTGTTCGTCGGGCATCTGCCTGCACGGATCAGGGATGCCCTGTGGAGCCGAGTCGTTGAAATGTGCCACGACGGGCGGGCGATCCTCGTGTACTCGATGCGCGGCGAGCAGCATTTCGAGTTCCGCGTGCATCGACATGACTGGGACGTCGTCGACTTCGACGGGCTGAAACTCATGCAGAGGCCAAACAATAGGGCACACAACTCGACACTGCGGCCGGGATGGAGCTCGGCTGCGCGGCGACGTAGGACGGCCAAGCGCTAGATCGAGTACACTTGTATCTGGGCAAAGCTCCTGCATCAACCGTAGTCGGCTGGT # Right flank : GAGGTCAGCATGGCTGACCTTGTTATCCAGGCGTTGCAGTTGGCGACAGCGGTCGTCAACCTCGCAGCCGCCGTGATTGCGGTGCGCAAGCTCCGCAAAGAAAGCCGCCCCCGAGCAGCAACTCGGAGGCGGCGAGGTGGCAAACGCCGGTAAACAACGGGGACCCGGTTCCACAGAGGGGCCGGGTCCCCTCCTTCCACGAAGTATACCTGTCTGCGCGGGCCAGGAGAAGGGGTCGCCGGTACGCCGATGAAGCGCTTAGGTCTCACCACAAGGGCCGTTGATTGAGGTCGTCTTCCCCGCCTACGCGGGGGTGAGCCGGACAGGTCTACGGCATCGGGGGTGGCGTTGGCGTCTTCCCCGCCTACGCGGGGGTGAGCCGATTCGCATCCACGGTGTCCCCGTGAAGAGTCTGGTCTTCCTCGCCTACGCGGGGGTGAGCCTTCGTTTCCGGCGTCGGTAGAGAATGACCAGGCGTCTTCCCCGCCTACGCGGGGGTG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCTACGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //