Array 1 147414-146096 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQE010000003.1 Limnothrix sp. FACHB-1088 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 147413 36 100.0 25 .................................... CGATTTCGCTGCGATTTATCTTGTA Deletion [147353] 147352 36 97.2 38 .................A.................. GCGAGGCACTATTGGCAGTCGCGATTTTGGAGTCGAGA 147278 36 100.0 37 .................................... AGCGCAAACTGTACGCCCTGGGGCAAGGTTGTAGACC 147205 36 100.0 34 .................................... ACTGCCCGTGAGGCAACATTGACCGCCGCATCGG 147135 36 97.2 36 ...........A........................ GATCCAATCCTGCTTTTTGGCCTTGCTCGGCAACTT 147063 36 97.2 34 ..........................T......... TCAACGTAGCCCTCGGAATCGTAGAGGCGAGACA 146993 36 100.0 36 .................................... TCTTCTGGATGGTGAAGACTACCCTATTCCGTCTAT 146921 36 100.0 38 .................................... GGATCGCCCTTTCGTTCGCTCGATACCACCTTGACCCT 146847 36 100.0 34 .................................... TCAGTCCCATCGGTTCCATCGGTTCCGTTGCGCC 146777 36 100.0 37 .................................... TCCTTCAGCGATTTAGAGTCCTGAGAGTGTTGGGATG 146704 36 100.0 37 .................................... GATAGTCGCCGGTCAAGTCAGCGGCAGCACAGCACAG 146631 36 100.0 34 .................................... AAGCAATCCAGTGCTTGCGGCCCACTACCTCGAT 146561 36 100.0 34 .................................... GAATGGAGGTATTGCGATTGCCAGCTCGTTTGTT 146491 36 100.0 34 .................................... TCTATCGGCTGTCTACCCTGTCAGGGCGGGCAAT 146421 36 100.0 35 .................................... TCGGTTGCCATGTCTAGTTCTTCTCCGCATTTACA 146350 36 97.2 34 ...........A........................ TGACGAGGCGATCGAGCAACTTCAGCTAATCCTT 146280 36 100.0 37 .................................... ACCATTCAGAGAACTACAAATGAACGGGATCGTTTCT 146207 36 100.0 40 .................................... ACCGAGCCTGACTGAAGTTCTGACACGGTGGTGATCCGTG 146131 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 19 36 99.4 35 GTGCAACCCCCGCCAAGGGGAAAACACGTTGATCAG # Left flank : GTTTTTTCCCGACAAAAACGCCATCGTCGGAGCCTTGGCGGAGCGCTATAACGATCAGATGTATGCGCTATTTCTCCAACTTCATGCCTCAGAGGCTAAAAATTTATCCCTCAAGGATTATGTTGATCGGATTGTTGATTCTTTCGATCAATTTCTGAAAACCCACCCGGGCTATTTAGCCATTCTCATGCCCTTGCAAGGACTGCCAGAACTGGCCGAAATTGATGCAGAAAATGACGATCGCCTGATCCAGGGCTACATTGACTATTTTCAAGATCGCTATCCCGGTCAAATGGCAGAAACCTATGAGGCGATCGCCTTTGTGATCGTCAAGGGAATTGGCACATTGCTATGGTTTACTTTCGGGCAGACGGACTTGGCACAAACCCGCTTAGTGCAGGAAACGAAGAAATTAATGTTGAGTTATTTATCTAATTATTTTGAAGACTCCGAGATCCTTGAAAGCTGATCGATCGGTAGTTGTTGTCATTGTTGTTGTA # Right flank : GGTACCCTGCAAAGAATCGGCCCCGCAAGGCTTCCCAGGCACTTTTACAAGCACCCTTCTAAAAGAATAGCTGACCAAGCAACTTCCGCAGCAAAACCACAAGCTTGAATTGCTGAAACATCTATCCTTAAAAGCTTTCAGAAAATACAAGCATCTAAAACTGCTGAAATCGCTATAGTCCCCACAATACGGGCAACTCATCCAATCGCCCGCAAAGCGTCGAGAGGTGCTTGTATTTGGGCATAACGTCTCAAAACAGCGATAACTGATCGCCAAATTGCACAGCCCCTTGCGAGTCACGATCGCCCACATCCCCCACAATCTCGATCGGCGCATTCTCCACAGGAGTATCTTTGGGCTTCGCCTTGCCCTTCCGGGCCTTGGTCGCCTTCGGTTTGTCCTCCGGCTTCGGTCGATCGCCCGTCATCATCGCCTTGATATTGATCGCCGCATTCCGATCGCCGTCCGAGTCATAGTGCCCGCAGTCCACACAACGGAAC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCAACCCCCGCCAAGGGGAAAACACGTTGATCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 1 280486-279362 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQE010000005.1 Limnothrix sp. FACHB-1088 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 280485 36 100.0 35 .................................... TCCCATCCCGATTGCAACGCCCCGGTGGCCCCAAC 280414 36 100.0 36 .................................... CCGTGCCGACAACTCCGTTGGTTGTGAGCGAAAACA 280342 36 100.0 36 .................................... ATAACCCGATCGTCCAAATCCTGTTCACGCAACAAC 280270 36 100.0 37 .................................... GATTTGGCTCTGCGGTTTGGGATTGAGGATGTGGATC 280197 36 100.0 37 .................................... TAAATTACGCCTTTCTACGCGGGCGTTTCGATGGTTG 280124 36 100.0 36 .................................... CCATAGCCAATTTCCCGGGCCAGCGCTTGCAACTCC 280052 36 100.0 35 .................................... GATCAGGACATCCAGCAACGGGTTGGGGCGATCGC 279981 36 100.0 37 .................................... CCATTTGCACTTGCGTCTGCTTCTCGAAGGATGGGCA 279908 36 100.0 38 .................................... TATGTCAAGGGCATGGAGTCGGGTGTTCTATCACCGGA 279834 36 100.0 38 .................................... GCCATGCCCTGACCATCACCGACGGCAGCAGCACGACC 279760 36 97.2 34 ...................T................ TCGGTGAACCGGGCGATTTTGATCGTGTCGAAAC 279690 36 100.0 38 .................................... CAATCCAAGGTTCAGATCATCGAAGCTCGGATGTCGCG 279616 36 100.0 36 .................................... TACACACTGTCAAACCCTTTGGCGATCACAAAGTCC 279544 36 97.2 36 ...................T................ CAAACGACGGGGCCGTCAGAGTCACAGCCGGTAATC 279472 36 100.0 39 .................................... CCTTCTCGTAGCTCAGCGGGCGTAATGGGCGGGGATTTT 279397 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 16 36 99.7 37 GTGATCAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Left flank : TCGGCCAGGGTCGATTTACCGTGGTCAATGTGCGCCACGATCGAGAAGTTACGGATGCGCGAAACGGGAACGTCGGTCATAGGAGCGGAACGGTAGGGCAAACGGGGAAAGGAAGCCAACCGCATTGTAACGAATTCCATAGCGTCTAATTCGCCTTGGCGCTCTGGATTGTTTGGGGCCAATGGAGCGATCGGGCTTTCGGCATGGATCGCGATCGGGCGGGGGCGATCGGGCGGGCTTGTTGCCCAAAAACAAGCACCTGGGGCGGTGGCGGCGGAGCGAGGGGCTGGAAGGGCGCAGAATGTTGATGGGGGTTGGGTTTGGCGATTTTTGGGATCTTTGGAGATGCTTGTAAATGGCTGAAAGGGAGATGGGGCAAGGGTTGGGCGATCGGCAAAAGGGCGATCGGGGGTGATGTTTTGGCAGATGCGGGGCGATCGGCTAAGATGCTTGTAAGGTTCCATTTCGGCGCTTGTCCCGTAAGGGTTTCAAGCGGCGGG # Right flank : AGCACCGCACAGCGCAGCACCGCAAAACACTCGTTTCAGCCCTGTTCTAAACTTTCCAATCCCGTGAGGTGGTGAGTCTGTCGTCAGATTCGCCACCTCACCTTTTTGATCGCCTCCACCTCCTTCAAATCCTTTCGCATCAGTAGAAACCCGTACTCCCCAAAATCAGAGCTTTAACCCGCTGATTCATACCTGGCTTACTCTCCGCCGCTCTTCGCCTCCGCTTCGTCACCCCCTGATCGCCTGTGATCTGTCACCACACCACCAATTGATTCAGAAAACGCCCATCTTTCGTGTTCATTAGAGAGCGAAAATCAGCCGAAAGATAATCTTTGCATTTTCGTCTACTCCTCAATTCTGAAGCCTATTCCGTAACCTTCGTCTGGAAAGTCTTGTCCCAATCGATCGACTGCGGTTGGCTGTCTCTTAGGTTTAATGAAACTAATCAGGAAAGCTTGCGGCGATCATAGGTTGCTGAAATATTTGATCGCTTTGCATTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCAAACCTCTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 63046-62347 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJQE010000018.1 Limnothrix sp. FACHB-1088 contig18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 63045 37 100.0 36 ..................................... AGCAACAAACTGCTCGTGATCCTTGAGGGCCAAAAG 62972 37 100.0 39 ..................................... ATAAAGCTCGGCAAGCTGGTCAAGGCGCTCTGCTGTCAT 62896 37 100.0 37 ..................................... ATCGTCAATCAGTGTCCGCCCCGACAGGGCGATCGGG 62822 37 100.0 35 ..................................... ACCAAAGCGATAGTCACCTTCTGGGCCGATCAGCT 62750 37 100.0 35 ..................................... TTGTCTATTTTACGCATTGCCGCGTAACACGGGTG 62678 37 100.0 35 ..................................... ATCGCTGGACTGATTGCCAGCGGCTTTAAAGTGTG 62606 37 100.0 37 ..................................... CTCAAGTCCCCCGCGCTGCCGGGTCGGCGGCTTTTCC 62532 37 100.0 39 ..................................... CAGAGCCGAAAATCGCTAATCGATTGGAGAAACCGCAAT 62456 37 91.9 36 ........A.G...................C...... CTGGATATCCCACGGGCGACCCTGAGTTTCCCCCGC 62383 37 94.6 0 .A........G.......................... | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 98.7 37 GTTGCAACGGAAGCCTGATTTGGGCGATCGTTGCAAG # Left flank : GTCGGGCTTGTGGATGGCAGGGCGATCGAGATGCGGTTGGGAGTGCTAACATATTGGCACGATCAATTGATCCGGCTTGGCCGGATTCGGGGCGAATTGTACCCCACACTTTAAAGCCGCTGGCAATCAGTCCAGCGATGTCAAAAGCAGGTCGGTTGCACGTTGGCGCAGCCAGACCCCAGCCCCTTGGAGGGCCGCCCTTAACCGGGAGTAGACCGCCTGAGTGCGTTGATAGGTCGCCACGCATTACGCGCGTACCGGAAGCTATGGCTGAAGGTCTGGTGGCTGAATCGACCCGAAAGCCCCGCCCAGCGGGAAAGACGGCGGTGAGGGCCGATAAAAAGGTTCGCGCGAGTCGTGAAAGCCTTGCCCCATCTGCAATCCCAGCATCGGTAGGATTGCACGACGATCTGGCCAACACCCAAAAACAGGATACCCGTAGCAGGTTCGCGATCAAAGCACCCGAAACGTCCGGCCAGCTTACTTTGTGGGATTGGGCG # Right flank : CGAAGGGAGACAGCTAGCTGTTTTGCATCCCCTCAATCATCTTAATCACCCGCTGCATCTCGGTTTGTAAACCGGTAATCTGGCTTTGCAGCGGCTCAATTGTTTGGGCGATCGCCTGCTGAATGCCATGGTCGATCGCCGCCAGGATTGAATAGGAATTCAGGCTAGAAAACTAGAGATAGCGAGAAATTTTAATTTTGCTGACCTTGTTGATGGGTTCTGCACTCTCCCAATAAAAACAGAAAATCACTAGATAAGGAAGAATAGCAATAACATTAGTCAGCACCGTAGCAATTACATGGATGATAAAACTTTCTTCCAGCCCCATGAATCCAGAAGGAATGTAAATTGCCACAGAAGCAATACCCATAAGCAGGATTGTAACTAAAACGCTCAATACCGTAGTTCCAGCAATTCTCCATCGCCTTCCTTGAGTTAACTGGGTGCTGCGCTGTCTAGCCTGAGAGCCAGTGGTTCCTTCCAAAACAACAACTGGATCT # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACGGAAGCCTGATTTGGGCGATCGTTGCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //