Array 1 3400231-3398918 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029710.1 Nocardia sp. CS682 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3400230 29 100.0 32 ............................. GATGTCCCATGCCCGACGAATTCAGCCCACTC 3400169 29 100.0 32 ............................. GCAATATCGCCGGAATCTTCGATGATCTCTTG 3400108 29 96.6 32 ..............T.............. GCGCGGTCGATTGGATGCACCGCCAGGTCGCT 3400047 29 100.0 33 ............................. TCCGGGGAACAAGCCTGGGGACGAGTTCCAGCT 3399985 29 96.6 32 .......G..................... ACAGAACAGCCCCGGTCACGACGTTGTAGATC 3399924 29 100.0 32 ............................. TCGTCGAGCTCGTCGGTGTCGTACTCGTCGTA 3399863 29 100.0 32 ............................. CACTCACACAACGACGGCTGCACCACACACTC 3399802 29 100.0 32 ............................. TAAGCCAGGCGGATTTTCAAATGACAGACGCC 3399741 29 96.6 32 .................A........... GCGGAACGGGACCGCGTCAGGTGTCGTGGAGA 3399680 29 100.0 32 ............................. TAAATCCGGACGAGGCTTCGCCGCTACACCCG 3399619 29 96.6 32 ............................T TGCGGTGTCGCACAATCTAATCCACGACCACA 3399558 29 100.0 32 ............................. CACTACGAGCTGAATCGCCACTGCCCAGGCGT 3399497 29 96.6 32 ............................T TCGCCCCGCGCAGCGGGGCAGCGTCGCCTCCG 3399436 29 100.0 32 ............................. CGGTCATCGGACTTGTCCGGGTCGTAGTCGAT GC [3399417] 3399373 29 96.6 32 ............................C GACGTGAGTTCCTTCGTGAAGTACACCGATAA 3399312 29 96.6 32 ............................T TGGGTAAAGACCCTGGTCAAGAGGCTAGTCAA 3399251 29 100.0 32 ............................. CTGCTCTTCGACCGGCGGGACGCTCCCGAAAA 3399190 29 96.6 28 ..............T.............. TTCATAAAGAGCCCGGGCATCTTCTAAC 3399133 29 93.1 32 ........................A...A TACGCCGCTGAGTACACCACCGCCGACACCGA 3399072 29 89.7 32 ...............C........A...C GCTCGTCGGCACCCGACGACCTATGACGCGAT 3399011 29 100.0 32 ............................. AAAGAGCAATGACGCACAGTGTCCGGGTTGGC GGC [3398991] 3398947 29 89.7 0 .G.........C..G.............. | G [3398939] ========== ====== ====== ====== ============================= ================================= ================== 22 29 97.5 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCG # Left flank : TCGGATACGGAGACGACTTTTGACCACCGTCGTCCTCACCGCCGTACCACCTGGCCTGCGCGGACACCTCACCCGATGGCTACTCGAAATCAGCCCAGGCGTGTTCGTCGGGAACATCTCTCCGCGTGTCCGAGAACTCATGTGGCAGCGCATCATCGAGTTCGTCGCGGAAGGGCGAGCCATCATGGTGTACACCGCACGCAACGAACAACGCCTCGCATTCGAGGTCCACGGCCACGACTGGACTCCCGTGGACTACGACGGCTTGACACTTATGCGTCGGATGACAGCTCCGGACTATGTCGCGACCCCGGCACTGACAGCCATGACGACCCGCTCAACCCACCAAGCAGAACACCAATCCGAGACCGTATGGCGTCGCCGCGTAGCCCGGCGCAAGTTCAAACCCAAGTAGCGAACCCAGGCGCCATCCCGCCCCGAACCAAAACAAACCGAATCAAAAATGGGCCTGACGGCTGCAAACAGCCAGGTCAACAAGT # Right flank : CGCACTCGATCGTGCAGGACACCACCGTCGTCGTGCTTCCACGACGGCAGGGTGCTCATCGGTAGGAATCCAGATCCCACTGGAGCCTGCTCAGCTTGCTGGACATCCTTTCGGCTCATCGCTGACTGTCGCCACGACGACGATGTCGTCGAACTACTAGCTCGGCATCGGCTGAGATCAGCAGCACAGGGCGGCGAGAAGGCGGTGTAGATGTTGTACGAGCCGTGCTACCGGTGCCCGGCTGTGAGGCGGTGGGGTGCTCCCCGCGCCCGACGCCACCAGACCCCGGGCGACACCACCCCCGGATAATGACTGCGACAGAAGGAAGTCATACCGGGGCCGGCGACCGTGGACCCGTGTCAGGTCCACGAAGAAGGCAACGGGGTTGACAGATGTTGGAGCTTCGGTGATGATCATGGAGGCGCTATAGTTGTGCCCTCATCTTGAAACGCGGGACTTTCGCTGTGGCAATAACTTTGATCCTCATCTGATTGCTGCCC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3410709-3409830 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029710.1 Nocardia sp. CS682 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3410708 29 100.0 32 ............................. TGGCCGCCGAGCTCGAGCTTGCCCAGAAACGA 3410647 29 100.0 32 ............................. CCCACGATGGTCCAGTCTTGGAGCGGTGGTGT 3410586 29 100.0 32 ............................. CAGGCGGAGAACGATTTCCGGCTGCTCATGGC 3410525 29 93.1 32 .............G..............T CTGGCGCTACCAGGTCCCCGGAATGGCCGGTC 3410464 29 96.6 32 ............................T CCCATGGAGACAACCCGTGGACCCGCTACACG 3410403 29 100.0 32 ............................. GGTTCCAGGGTGCACCGGCCGGTGCCGTGGTC 3410342 29 100.0 32 ............................. CGGTCGTGTTCGCAGTCCCAGTGGCCTTCACG 3410281 29 96.6 33 ............................A ACAAGTGGTGAGAGCGCTGGGTAGAGCTCGTAG 3410219 29 96.6 32 ............A................ ACCGAGTACGTGCTTGAGACCAACGACCGAGG 3410158 28 93.1 32 .....T..............-........ TACTACCTCGATGAGATCGCCGACCAACAGGT 3410098 29 93.1 32 ...T.....................G... AACACATCGATCGGGTACTGCTGGCACAGGCG 3410037 29 96.6 32 ..............T.............. ATCGGGTTCGCCGCGGGCCGCGCCTACGCGAA 3409976 29 100.0 32 ............................. GCGATGAGGTCAATCCCCGGCGCCGCGCTCCC 3409915 29 93.1 28 ........................T..T. CGGATTGGCTTTCAATCCAGATTCGTCA G [3409894] 3409857 28 79.3 0 ........GT-.....T........C..C | ========== ====== ====== ====== ============================= ================================= ================== 15 29 95.9 32 GTGCTCCCCACGCACGCGGGGATGATCCG # Left flank : GAGATCGACCAAGCCCGCAGGGAACACGGACTGCAATTCATCGAACTTGTGGAAGGACTCCAACGGATCGTCCGTATCTTGCCCCTAGGGACAACAGCCTCCGTGGACTCTGCGGCTCTCACCGCTCCCGCTGAGCGACAGCTGATCGATGTAGTAGACGGCCTCGCCCGCGCCGGTGATGATCGTTCGCTGGTGAGCTGGGTCGGCCGAGCTGCACCGCTCGCCGTAGCCCTCCGGGAGTTCTTCGACAACATCCTTGTGATGGACAATGACTCGTCGATTCGGGCGGCGCGTCTCGGCCTCCTCGCGAGCGTCCTCGATGCAGCGCCTAGGGGAATCGACTGGAAAGCTGTCCATCTTCTGCGTGCTGACACCACCGACACCGGTGTCGGCTCGAAGGTTTCGAGCACACGCGGTTAACCATTTCTAACACCTAGGAAGGGCGGAACAAACCGATCGAAAACCTGGAAATCATGAGGTAAACGACCAAGTCAAGAAGT # Right flank : CCAAGGACGACCGGCTGTGCAACGAACGTGACGAGTGTTCCCGCGCCTGCTGGGAGATGTGTTGCCCATGATTGATGCCGATGTCAACGGCATGGTCCGCTGCATGAAGGTTATTGGTGACGGGAGCGCCCGGCTGTGGAGCTCGCTGGGTGAGGTGAGCTTCAGCGGCGCGAGGCAGGGCTGGGTTGGTTGTACCGCGTTGCTGAGCGTGGTGGTAGTTGGTACGTCGGGCAGGAGAACCGGTCGGTTGGTCATTTCGATGTTTCTGTTGTGGATTGCTAGAAGTGCGCTTGCACAGTTTGTTTCGCGAGTACCGTTGTCGGAAGTCGTTGAGCTTCTGGGCATTCCGGAGGCGCCGCGAACTTGTCGGTGGGGGGTGAGACAGTGTTGTGCATTCCCGGAATTTCGGGGCGGATTCTTTCGTAAGGGGTCGGTCTTTGGTGTTGAGCGAGGCTGCTCGATCGGTGTGGGCGAAGTCGCCGAACGCTGCTGGTGAGTGG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3470521-3469637 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029710.1 Nocardia sp. CS682 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3470520 29 96.6 32 .....A....................... AATCCGGCCGAGCAGATCCGGGCCGAGTACGT 3470459 29 96.6 32 .....A....................... AACAGTACGGCGATTCGGGCTGGTCCTACTGG 3470398 29 100.0 32 ............................. GGTGCGCCCTGGACAACCGCGATAACTGGCGT 3470337 29 96.6 32 ............................C TGATCGAAGGTTTCGGATACGAGTTCTGGGGA 3470276 29 100.0 32 ............................. GGGGACACGGCAATGACGAAGATTGATCGGGT 3470215 29 100.0 32 ............................. TGACCGAGCTGACCATCACCCACACCGCCGAG 3470154 29 100.0 32 ............................. CTTTCAGCGTGGCAGCAACAGCTGTCCACCCA 3470093 29 100.0 32 ............................. CTTCCGGCGCCGGTGAAGGAGGCAGCGGCGTT 3470032 29 100.0 32 ............................. CCATTCGAGGGTCTAAACCCACGTAACCGCGG 3469971 29 96.6 32 ............................C CTCGCCGCCGAGGTCCCGCGCTGTGTTGTCGT 3469910 29 100.0 32 ............................. ATTCGGCATTGCCGGTGAAAAATCTCGTACCG 3469849 29 96.6 32 ............................T GGCGAGAAGCGCAACACCGCCGAAACCGTCCT 3469788 28 96.6 32 ........-.................... GCACTCGAGGCACTGGGAATGTCGGATCGTAA C [3469771] 3469727 29 96.6 31 ............................C GTTCCAGTCCCCACAGCGCCCATGTGGCAGT 3469667 29 89.7 0 ...........C..............T.T | GC [3469648] ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.7 32 GTGCTCCCCGCGTACGCGGGGATGATCCG # Left flank : CAACAAGCTCCATAAAACGCTTGACCCGTACGCCTGCTGATAGGGCAGCGCGGCTGCACTCGAGTCCGCTCGAATGCAGTGCATCGGTCGCACGGCTGAGCATGAATATTCCTGGACCTTTGCATCACGTAGCGTGTGGTGCTTGGCACAGGCGAGGGAATAGACATCGTCAGCAAGCTTGCAGCCTCGTAGTGGCGAGCTGGTCGTGCTGGTCGCTGTGTATCCCGGTGGTGTGACTCGGGATCGACTCGTGGAGGCGTTCTGGGGTGCGCGGTGCCCGGCCCGGCCACCGATGCGATCAATACGACCTCCCCGAGGAGCGGACCGAGCACCGAGTGCGAGTGCGACCTGCGTGTTGGTCTGTCCGTAAAGCGAGCCGATACGGTTGATGTCCAGTGCGGCTTCACCAGCTTCGAGTGTTTACGTGTAATAGAACTTGGGTGCAAAACAAACCGATGGAGAAGTTGGAGAACGCGAGCTAAACAGCCAGGTCAGGAAGT # Right flank : TGGGTAGGCCCAGCACGTCGGACATCGGTAGAGTGCTCCCGCATACGCGGAAAAGCGGCACGTTGCATCTGTTCAGAGGCGCTACTCGCGGAGTGCGTAACCCAATTTGCATTGCCTCAAGTGCATCGAGTATAAAAAGGCGAGTCGTGTAGCCGCAGTATGCCTGTGGGAAAGATGCATTCACGTATCACTCCCGACCTCAAGGGTCTCCGGCTACTCAAGAACTTGCGGTGTTGCTGGATCGGCTGCAAATAGCCACTGCGAAAATAGAATTTGCGTTATTGTGATCCTATAGTTCTTAACAGGGATTCTCGGCTTGCTGGCGTGGCGATTATTTGTTTAACACACCGGGGAGTTCAGAGTTGCTGTCTGTCGCATTTGCCCTTTGCTTGCTGCCGGAAATCAAGCGTCAGATCGGTGGCTCGGTCGTTGGCTGAACCGTTGGCGCACTTGATGACGCAACCATGAGTCCACCGCCCCGGCTTCACTGTATCGCCAGC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3482452-3481573 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029710.1 Nocardia sp. CS682 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 3482451 29 100.0 32 ............................. CTCTTGGGCCTTTCGGATTTCGTGGTCCGGCC 3482390 29 96.6 32 ............................T GCGTTCGTGTGGCGCCAGAAGGATTGGGAGCG 3482329 29 96.6 32 ............................A TATTCGTCTCTACCTGCGAGATTCAAGAAAGG 3482268 29 100.0 32 ............................. CGGGACCGACGCGACCAATGCGACCGCAGTTG 3482207 29 100.0 32 ............................. TTTGGCTAGGAAAGCGCTCATTTCAGGGGCTC 3482146 29 100.0 32 ............................. CAATGGAGGTCATGCGCCAACTTCCAGACGGC 3482085 29 100.0 32 ............................. TATCGGTGGCACAGCACCTGCACATCACCGCG 3482024 29 100.0 32 ............................. AACACCAGCGCATGGATGGCGTTCGACTGGAA 3481963 29 100.0 32 ............................. CCCGGCTGTACTGCGTGCGCCGGACCCGCGAT 3481902 29 100.0 32 ............................. CATGGCGCGAGACGGAGAAGGTACTCGACCAA 3481841 29 100.0 32 ............................. ATCCGCGACTACACGCTGTGGCTCCAGGTCCA 3481780 29 100.0 32 ............................. TTTGCACGATGTTAGGCGTTGGTTAGTAATGA 3481719 29 96.6 89 ..................T.......... GCGTGCGGGACATGGACACAGGACCGCGTCGAATGCTCCCCGCGTGCGGGACGATCCGGGCAGGTTCCCGACCCGGGAACCCACCACCG 3481601 29 79.3 0 A.....T.....T......A....G...A | ========== ====== ====== ====== ============================= ========================================================================================= ================== 14 29 97.8 36 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : ATAAGGGGTATCGTCGGTCCATGTCTCAACTGTCACGCCGGGACTGGGCGACAATGAATCTTGAGCAGGTCCGCGACCAACTGCTCGACGCGGCGGCCTTTGGGAAGTATCTGCCGCCTGAGCAACTGGAGAATGCGGCCGGAAAGATCGGTGAGGGTCTAAGGGTGTTCCGTGTGCTGACGGACGAGAGCGAGCTCGAGGGGGACGATCGTCCTGGCGGAGCGAGGGGGTGCCGGGGACGGTCGTCAATGCGAGGTCTCCGTCGAGGAGAGCCGCCTGCTAGCTGATCGCTTGAGAAGTGACTCGATAGGGCTAGATTCATGTACGCCAACCACTTAGACCGGCAGCGAACGGTCCTCGTTTCTTGCCACCCGACCACGCCGCAGTCTTGCCCAGGCGGAACGAAAGCCGCTCGGCAGTGGTGTCGGATCGGTGCCCGGCACTGAGTAAAACCGATTGAGAAGTTGCGATCTGACGAGAGAACAAGCAGGTCAAGAAGT # Right flank : CGGTCAAGGCTGGCAGGTACAGATCGGCGTCTTATAGTGATAGGCGGTGGACACTAAGGAGGGGAGTCGCGGTGGGGGGAGAACTTCAGGTTGAAGTCGACCGCCTGCGTGAGGCGTCGCGTTTCGCCGCGGACCGGGCCACTGCGATCCGAACCGAGTTGAAGAAGCTCGATGACACGATCGGCAAGGAGTTGCTCGTCGACGGCTGGCAAGGCCGTGCGGCGAGCGCCTATGACGAGTCGTGGCTGGAATGGAAACACGGGGCGGAAACGATCATTGCTGCGCTGGAGGAGTCGTCGGTCAACCTCGCTGAGACCGCGACTCGCTACGAATCGCGCGATTCCACGAATCGCGATGCGATTTCCGGGTTGACGGGGTTGGATCTGCCGTGACCGGCGATGACCGCTACCGGGTGGACCTCGAGCAGCTCGATGCCGCGATCGAGACGATGGCGGCGTTCGGTCGCACCGTCGAGGACTGGTTGAGCGAGGTCGATCGCC # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //