Array 1 1234031-1235322 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012288.1 Pediococcus damnosus strain TMW 2.1535 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1234031 36 100.0 30 .................................... GTGATACCAGTGCCGTTTAACGCTGACATC 1234097 36 100.0 31 .................................... ACTTTCCAAAAGCCAAGAAAGCTGGTTGAAA 1234164 36 100.0 31 .................................... CACTTCCACATTTTTGGCACCATCAAACGCA 1234231 36 100.0 30 .................................... CATAAAACATGATAAAGACGTTCAGCATGA 1234297 36 100.0 30 .................................... TATTATATGCAGATCCTAATGTTGAACTAA 1234363 36 100.0 30 .................................... CACTGATTAGTTTGGTCTCACAATCCAAGC 1234429 36 100.0 30 .................................... ACGCAAGACCAAATTGATTCTGGCCCAGCA 1234495 36 100.0 30 .................................... ATGGACGTTCATGTATGGCTCATTCTCAAA 1234561 36 100.0 30 .................................... GCCCGTTTGGGTTTGGCCTTGAACATAATC 1234627 36 100.0 30 .................................... TGTATTACAGGGTTTACATTGCCTACGCGG 1234693 36 100.0 30 .................................... AAAAGTTTGTGCTGCCAATGGCAGGAACGT 1234759 36 97.2 30 ..................................T. CATTAACAATCGCAAACTCACCATTTCCTT 1234825 36 100.0 30 .................................... GTTTGTCCGAACCGTGCGTCATGCACATCT 1234891 36 100.0 30 .................................... TACTCAATCGCAAATTGATTCCGCACCGGA 1234957 36 100.0 30 .................................... ATCTTATCTGGCATTTCATCACACATACGT 1235023 36 100.0 30 .................................... CTGACCATAAAGCTGTATCAGCAACCACCA 1235089 36 100.0 30 .................................... CCGGTCGTCGTCGGTTAAGTACCACTCATG 1235155 36 100.0 30 .................................... GTGTGGCGTTGGCTAACGTTGTTGAGGGCA 1235221 36 100.0 30 .................................... TAATGTAAAAAAGCTTGACTGTATACACAT 1235287 36 91.7 0 .................................GAA | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.4 30 GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Left flank : AGCAGATTTAAATAAAATGTTTCAAGGACAATTACAAAAAAAGATCGTTTCGAAATTAGATGATGATACAAGATTGCAATTAACGGATCTTAATAATAAATTAAAATCACTTATTTTTGATGCTACGTTTTCGTTAGACCTTCCGTTAAAAGTAGATAGTGAATTTGATCCAGTTAAATTAGTTAAATACTGTAATGTTGGGTTTGTAAGTGCTTTAAATAGGGATCCTTATGATATAATTGAAACTGTATTAAAAACTGCTTCTGAATTAAAAGAAACAAAAATATTAATCTTAACTAATGTGCGCAATTATCTCAGTGTCAGCCAATTTAATGAATTGGTGAGTTTAATTAGCACGCTTGATTTGAACATTCTGTTTATCGAATTCTCAGATAACAGATAATCACGAAGAATTCGATAAATGCCGTTATTGCTACGTTGATCAGGATTTTGTTGATTGGCGTTATTAATGTCTATGAGAGTAGCATTATAAAAAAACG # Right flank : ATCAGGAGCGGCTTGACGCATTGAGGTAAAATAGTTTTAATTATTATCGTATATATAAAATAAATGAACCTCAATTGCACCAAAATCTGAACTTCATTAAAACAGAAAAGAACTACACAAGGAGCCAAGTATGCAAGTAACAGTAAAATCATTTTCAGAGTTATCCAATACAGAACTATTTAAAATCTACAAACTCCGTACCCAAGTCTTTGTTGTTGAACAATTATGTGCCTATCAAGAGGTAGACGATGAGGATCTCATCGCCCAGCATTTACAATTTACAAACGAGGCCCAACAGTTAGTGGCCTATTTACGAATCATCCCTGAAACGAACGAAACGATTGTTCATATTGGTCGGGTGGTTGTTAATCCACTCTTTCGCAAACAAGGGTATGGACGCAAACTCATTACGAGTGGACTTGAAACGATTAAAAAAGATATGCCAAAGGTCACAACGGTAAAGATTCAGGCCCAGGCTTATTTACGATCCTTTTATCAAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTGTCGAATCAATATAGTTAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //