Array 1 34-404 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAD01000112.1 Schleiferilactobacillus similis DSM 23365 = JCM 2765, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================== ================== 34 34 100.0 33 .................................. ATGTATGTGGACGAAGAAGAAGCTCAAATCGAG 101 34 100.0 33 .................................. GAACTGTCGGTATGACTGCTTCGCCGAGGTGAG 168 34 100.0 34 .................................. CGTTCGCAGTGAAGATTCCCGATAACCGCGTTGA 236 34 97.1 34 ...................T.............. ATAGAAGTGCATTGGTGTTGTCATTTAGTTGGTT 304 34 100.0 33 .................................. ACCCATGAGTGGGCGCTGGCCGGCGAGTTATGC 371 34 76.5 0 ....T...A.....CA...TAG.......A.... | ========== ====== ====== ====== ================================== ================================== ================== 6 34 95.6 34 GTCTCGCTCTTTCGTGGAGCGAGTGAATTGAAAT # Left flank : AAATCGAGAACAGTGATGTGGGTGTAGTTACTCG # Right flank : TATAAAATTGAAACCTAATTAAAAATTGGTACGTGTCTCATACAACTCAGATGTGTAAATTCAAATACAAGACAACTACCTACTGTGAAGCGTATAATAAGCCTAATCTAATCATTTACGGAGGCTATTCATGACAGAAAATAACACTCATTTCTATACCAAGTTCCACCCATCAAACTACAACGTCTACCTAGACATCAACCGCGCCACAAAAACAATCAGCGGCCAAACCACCATCACCGGCGAAGCCCTAACCACCGAAATCTCAATCCACCAAAAGGCCCTCAAGGTAACCAGCGTCCAATCCCAAAACACGGACGTCCCATTCACCACGGACGATGCAGCAGAAGCCATCAATATCACGCTGCCATCAACCGGTGAAACAACCTTGACTATCGACTACACCGCGCATTAACCGACGCCATGATGGGCATCTACCCATCCTACTACGAGGTTAACGGCGAAAAGAAGCAAATCATCGGCACGCAATTCGAAACCAC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:0, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCTCTTTCGTGGAGCGAGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 4350-5555 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAD01000127.1 Schleiferilactobacillus similis DSM 23365 = JCM 2765, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 4350 34 97.1 34 ........A......................... ATTTATGAGTGTTGTCGACACCGTGAGTGCCTGA 4418 34 100.0 34 .................................. GGAAATAAGCCATTAAGATGGGAAACCGGCGAAC 4486 34 100.0 36 .................................. AGGTGATTTATGAACTCAACTTGGAACTGATTAAGC 4556 34 100.0 36 .................................. GGCATTAGCATCACCATGTAGATCATAAGAACTCCA 4626 34 100.0 35 .................................. AATTAGAGCCTAAATTCAAGAAAATGAATGAGGAT 4695 34 100.0 35 .................................. TGCCCCACGAGCGTTGACATAGGCGGAACCGTCAG 4764 34 100.0 34 .................................. ATGGTGGGACCGTCACTCGGGTTGGTAAACCAGT 4832 34 100.0 34 .................................. ATCAGCGTTATCGTGCAAGTAGGCGGTGTCGATG 4900 34 100.0 36 .................................. GTTTCTAGCTGGTCTAAGAGCTGCCTGTCAGTCAGC 4970 34 100.0 35 .................................. ACGATGGCTATCAATTTCCTAGCTGTTGTGGGCTT 5039 34 100.0 35 .................................. AGCCCGCAATTCGTCCACAGCGTAGCATGGATAGA 5108 34 100.0 34 .................................. ACCTTGTATCTCTCTAACGGTTTTAATCATCTAT 5176 34 100.0 36 .................................. ATTCAGACATTTAATGTGTCGTTGGTCTAACGTGCC 5246 34 100.0 35 .................................. ACCGGTGAAGACGTGCAGATTGACGATACCGGTAA 5315 34 100.0 35 .................................. AGTATGGCCCGGCGCTACGGGAACTGAAGTCACCG 5384 34 100.0 34 .................................. AACCATTAACCCATCTAATTCGGTTTGTGACGTG 5452 34 100.0 36 .................................. GGCTATTCCAGCGATGGTGATGGCGATTCTGGTGAT 5522 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ==================================== ================== 18 34 99.8 35 ATCGCACTCTCTAAAGGAGTGCGTGAATTGAAAT # Left flank : CACAGTTGAAGATGCTGAAGATCTCAAGCAGGCATTAACAACATTGTTCGTAAATGATTCTTCATCTGCGCGTCCAGAAGGATCAATGGCAGTGCTGAAACTAATCTGGTGGGAGCACAGCACAATGCTAGGGAAGGTACCACCTTATGTTTTGCATGAATCCGTAAAAGTTGAAGTTCCAGAGAGCGCACGGAAATTTGATGAAGTTAAGATTTCGATTGAAGATTTAAATGATGTTAATGGTGTTACAAGAGACATTGTTAGTGGGTATTAGAATTTAGAATTTCCAAAAAGCAACCCAAATAACGTCGTTCATATTGACAAATAATAATATTATTGCAGGTGCGGACCTCTAGTACACATAATTATTGTGGGGGATTCGCACCTGCAATAGTTGACATTTATGTGAGTTTTGTCAGGTTGTTTACTAGTTGATTGTTATATATTGAATCGTCTCACTAGATATAGTTAAACTAGCGTCTGATATACTATATCTTGGG # Right flank : TATACGTCAACTTGAAATGGAGTTAGGCTTTTCAATCGCACTCTCTAAAGGAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTCTAAAGGAGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : NA // Array 1 935-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAD01000143.1 Schleiferilactobacillus similis DSM 23365 = JCM 2765, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ===================================== ================== 934 34 100.0 35 .................................. ACACGGTGACGTGTTGGATCGGTACGGCACTGAAG 865 34 100.0 34 .................................. TACACGGTGAAATGGTAGTGATCGTTACCTCAGT 797 34 100.0 35 .................................. ATGCGTGCGTTAAAAATGCTCTGTATGATGGCGTT 728 34 100.0 35 .................................. ATTAATAAAGGCGGCTTTAAAACAAAAAAAGAAGC 659 34 100.0 36 .................................. ACGAATGAAAGTCGCCACGACTACCAGAGCCATAAT 589 34 100.0 33 .................................. GTCATCCATCAGTCCGTGAAGGAGTCCAACCAC 522 34 100.0 35 .................................. ACCGAACATGAGTGAAAAGAGTCAACAAGGTCAGG 453 34 100.0 33 .................................. CAAACCGCCGCCAATGATTCTGGCGGGGCGTTC 386 34 100.0 36 .................................. CATGTTGGCTACCGTGACTTCATAAGTTCCGGCGGG 316 34 100.0 37 .................................. ACTGTCGGTTGTTGGGTATTGGATCAACCCGGTGCCG 245 34 100.0 35 .................................. GACTTCTTAGTCGTCTTGGCGTACGCCTTAGAAAT 176 34 100.0 35 .................................. ATTGATACGGAACGTGGTAGTGTCGGTAAATGAAT 107 34 100.0 35 .................................. ATTCCTCGTCACCGTCCTTAACCATTTCAAATCGT 38 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ===================================== ================== 14 34 100.0 35 GTCTCGCTCTTTCGTGGAGCGAGTGAATTGAAAT # Left flank : ACTAAATGTTTTAATGTTATTGATAGTCCAACAACTGACGTTATAGTTGAATATTCAATGGATGATGAAAAATTTAGCGGTACCTCAGGGGATACTGAAAGTCACGATATTATTACGCAGTTACTCTCCGAACAAAGTAAATTTGGTGATGTTTCTAAATTATTGAAAGCGGCTAGACCATACACAGTATCCGTCTATGATGGTGCATTGAAAAAACTACAAGAAGAAGGCGCCGTTCAGTACTACGAAAATCAAGATATTTGGGTTGTTTTGAAGAGTGCCTATAGTCCTGAGTTTGGATTGGGTGGCAACGAATTAAATCCAGACGAATTTATGTTTTAGGTGCGAACCGTAAGCTCACATGTTTTTTACGGAGGATTCGCACCGATAATATATGACATTTTGAATCAAAGTTACAAAGTAAAATTTACGAAGTATGTATTATATGTATCGCTGCACTATATTTAGTATTGATATATGAACATATACTAAATGTTGCG # Right flank : TCGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCTCTTTCGTGGAGCGAGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 2 4060-3822 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBAD01000143.1 Schleiferilactobacillus similis DSM 23365 = JCM 2765, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 4059 34 100.0 35 .................................. ATCATTGTTGTATAGATCAGACAATAAGTCGTTGG 3990 34 100.0 34 .................................. CAGACCCAACCAAATTTTTAGCAACTAAAGCCGA 3922 34 100.0 33 .................................. ATCGCTAACATCAAAGGCCCTCTCGCATCCGCC 3855 34 94.1 0 ..........T............C.......... | ========== ====== ====== ====== ================================== =================================== ================== 4 34 98.5 34 ATCGCACTCTCTAAAGGAGTGCGTGAATTGAAAT # Left flank : AGAGTGCGTGAATTGAAATACGTAAGGCTTCGTATTGTGACTTGGTAAATGC # Right flank : AGCTAATGCCTTGCGTAGGCAGAATTGAGTTTAACATTGCACTTACTCGAAGGGGGAGACTATTCTCGAGGAAAGACCTGTGTAGGAACTAAATTCTACGATGAGTATTCACAAGAAATAATTTAACGAATTATCACTTTATATTAGAACGTAAATTTGAATTATGAGCCTAATAGGAGGTTTTATGATGAAATATATCGCACATATTGGTCGGGATAATGATCAGACGCAACTTTTAAGCGATCATTTGACTACTGTTCGTGACATGTGTGAAGAGTGGGGAAGATCGATTGGACTTAGTCATGTTTGTGGATTAGCAGGCTGGTTGCATGATTGCGGAAAGTATACCGATGAATTTCAATCATATATTCTGAGAGCACATAATGGAGATCCTAAAGCGGTTCCGGGAATAGTAGACCATTCTAGTGCAGGCGGTTTTTATTTAATCCAATGTATTGAAAAATATAAAGATGTAACGGGTTTAGCAAACCAGCAGCCTG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCTCTAAAGGAGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.82%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //